POMGNT1 (protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)) - Rat Genome Database

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Gene: POMGNT1 (protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)) Chlorocebus sabaeus
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Symbol: POMGNT1
Name: protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)
RGD ID: 18418663
Description: ENCODES a protein that exhibits acetylglucosaminyltransferase activity (inferred); beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity (inferred); carbohydrate binding (inferred); INVOLVED IN basement membrane organization (ortholog); brain development (ortholog); dentate gyrus development (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal recessive limb-girdle muscular dystrophy (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2O (ortholog); FOUND IN Golgi apparatus (inferred); Golgi membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12086,588,049 - 86,597,576 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2086,588,550 - 86,599,107 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603330,389,152 - 30,398,705 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
POMGNT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12086,588,049 - 86,597,576 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2086,588,550 - 86,599,107 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603330,389,152 - 30,398,705 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
POMGNT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38146,188,683 - 46,220,305 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl146,188,683 - 46,220,305 (-)EnsemblGRCh38hg38GRCh38
GRCh37146,654,355 - 46,685,977 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36146,426,940 - 46,436,708 (-)NCBINCBI36Build 36hg18NCBI36
Celera144,941,643 - 44,973,721 (-)NCBICelera
Cytogenetic Map1p34.1NCBI
HuRef144,769,330 - 44,801,277 (-)NCBIHuRef
CHM1_1146,771,477 - 46,803,118 (-)NCBICHM1_1
T2T-CHM13v2.0146,065,903 - 46,097,522 (-)NCBIT2T-CHM13v2.0
Pomgnt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394116,007,700 - 116,017,041 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4115,981,037 - 116,017,046 (+)EnsemblGRCm39 Ensembl
GRCm384116,150,498 - 116,159,844 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4116,123,840 - 116,159,849 (+)EnsemblGRCm38mm10GRCm38
MGSCv374115,823,123 - 115,832,449 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364115,648,457 - 115,657,776 (+)NCBIMGSCv36mm8
Celera4114,888,693 - 114,898,002 (+)NCBICelera
Cytogenetic Map4D1NCBI
cM Map453.1NCBI
Pomgnt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85134,870,971 - 134,880,864 (+)NCBIGRCr8
mRatBN7.25129,634,274 - 129,644,150 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5129,634,294 - 129,644,149 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5132,250,551 - 132,260,368 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05134,005,138 - 134,014,956 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05134,027,575 - 134,037,392 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05135,007,343 - 135,017,220 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5135,007,343 - 135,017,218 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05138,791,235 - 138,801,112 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45136,429,379 - 136,439,254 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15136,434,604 - 136,444,480 (+)NCBI
Celera5128,162,654 - 128,172,461 (+)NCBICelera
Cytogenetic Map5q35NCBI
Pomgnt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546412,077,406 - 12,086,700 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546412,076,815 - 12,086,961 (+)NCBIChiLan1.0ChiLan1.0
POMGNT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21180,584,412 - 180,616,625 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11179,726,026 - 179,758,221 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0145,494,834 - 45,525,804 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1146,849,528 - 46,859,137 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl146,849,528 - 46,859,137 (-)Ensemblpanpan1.1panPan2
POMGNT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11514,176,932 - 14,187,181 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1514,178,357 - 14,187,161 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1514,299,079 - 14,309,089 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01514,329,378 - 14,339,540 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1514,329,801 - 14,339,540 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11514,130,602 - 14,140,611 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01514,199,089 - 14,209,095 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01514,268,643 - 14,278,728 (+)NCBIUU_Cfam_GSD_1.0
Pomgnt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505861,404,486 - 61,417,843 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647427,229,113 - 27,239,123 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647427,229,262 - 27,239,034 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POMGNT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6165,212,833 - 165,222,409 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16165,212,828 - 165,222,412 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26152,692,300 - 152,701,877 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pomgnt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249062,119,684 - 2,135,656 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249062,120,759 - 2,131,024 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 49
Low 20 11
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000017306   ⟹   ENSCSAP00000016787
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2086,588,550 - 86,599,107 (+)Ensembl
RefSeq Acc Id: XM_007978910   ⟹   XP_007977101
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12086,588,049 - 86,597,576 (+)NCBI
Vero_WHO_p1.0NW_02366603330,389,152 - 30,398,705 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007978911   ⟹   XP_007977102
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12086,588,052 - 86,597,576 (+)NCBI
Vero_WHO_p1.0NW_02366603330,389,152 - 30,398,705 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007978913   ⟹   XP_007977104
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12086,588,051 - 86,597,576 (+)NCBI
Vero_WHO_p1.0NW_02366603330,389,152 - 30,398,705 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007977101 (Get FASTA)   NCBI Sequence Viewer  
  XP_007977102 (Get FASTA)   NCBI Sequence Viewer  
  XP_007977104 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000016787
  ENSCSAP00000016787.1
Reference Protein Sequences
RefSeq Acc Id: XP_007977101   ⟸   XM_007978910
- Peptide Label: isoform X1
- UniProtKB: A0A0D9S7E8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007977104   ⟸   XM_007978913
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007977102   ⟸   XM_007978911
- Peptide Label: isoform X1
- UniProtKB: A0A0D9S7E8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000016787   ⟸   ENSCSAT00000017306


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000001227 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000017306.1 UniProtKB/TrEMBL
InterPro Glyco_trans_13 UniProtKB/TrEMBL
  ILEI/PANDER_dom UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
  POMGNT1_PANDER-like UniProtKB/TrEMBL
KEGG Report csab:103224896 UniProtKB/TrEMBL
NCBI Gene POMGNT1 ENTREZGENE
PANTHER PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1 UniProtKB/TrEMBL
  PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1 UniProtKB/TrEMBL
Pfam GNT-I UniProtKB/TrEMBL
  ILEI UniProtKB/TrEMBL
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt A0A0D9S7E8 ENTREZGENE, UniProtKB/TrEMBL