Atf5 (activating transcription factor 5) - Rat Genome Database

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Gene: Atf5 (activating transcription factor 5) Mus musculus
Analyze
Symbol: Atf5
Name: activating transcription factor 5
RGD ID: 1553130
MGI Page MGI
Description: Enables chromatin binding activity and transcription cis-regulatory region binding activity. Involved in cerebellar granule cell precursor proliferation; circadian rhythm; and fat cell differentiation. Acts upstream of or within several processes, including negative regulation of apoptotic process; olfactory bulb interneuron development; and regulation of transcription by RNA polymerase II. Located in nucleus. Part of transcription regulator complex. Is expressed in several structures, including central nervous system; endocrine gland; integumental system; sensory organ; and urinary system. Orthologous to human ATF5 (activating transcription factor 5).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: activating transcription factor 5-alpha/beta; activating transcription factor 7; activating transcription factor X; AF; AFTA; Atf; Atf7; Atfx; BZIP protein ATF7; cAMP-dependent transcription factor ATF-5; cyclic AMP-dependent transcription factor ATF-5; MGC102397; NAP1; NRIF3-associated protein; ODA-; ODA-10; transcription factor ATFx; transcription factor-like protein ODA-10
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,461,680 - 44,466,082 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,461,680 - 44,466,082 (-)EnsemblGRCm39 Ensembl
GRCm38744,812,256 - 44,816,658 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl744,812,256 - 44,816,658 (-)EnsemblGRCm38mm10GRCm38
MGSCv37752,067,626 - 52,072,028 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36744,680,300 - 44,684,614 (-)NCBIMGSCv36mm8
Celera740,262,568 - 40,266,954 (-)NCBICelera
Cytogenetic Map7B3NCBI
cM Map728.92NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane  (ISO)
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
1H-pyrazole  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-methylcholine  (ISO)
3',5'-cyclic AMP  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
AM-251  (ISO)
amino acid  (EXP)
amiodarone  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
antimycin A  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsenite(3-)  (EXP,ISO)
azoxystrobin  (ISO)
benzbromarone  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
buspirone  (ISO)
butyric acid  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
cannabidiol  (EXP)
carbon nanotube  (EXP)
casticin  (EXP)
CGP 52608  (ISO)
chlorpyrifos  (EXP)
choline  (EXP)
cisplatin  (ISO)
clofibrate  (EXP,ISO)
clofibric acid  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumestrol  (ISO)
Cuprizon  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (EXP,ISO)
cyproconazole  (EXP)
deguelin  (ISO)
dexamethasone  (EXP,ISO)
dibenz[a,h]anthracene  (EXP)
dibutyl phthalate  (ISO)
dichloromethane  (EXP)
diclofenac  (EXP)
diquat  (EXP)
disodium selenite  (ISO)
dorsomorphin  (ISO)
elemental selenium  (ISO)
endosulfan  (ISO)
Enterolactone  (ISO)
entinostat  (ISO)
epoxiconazole  (EXP)
fenamidone  (EXP)
fenpyroximate  (ISO)
flutamide  (ISO)
folic acid  (EXP)
furan  (ISO)
gentamycin  (ISO)
inulin  (EXP)
isotretinoin  (ISO)
ivermectin  (EXP,ISO)
L-ethionine  (ISO)
L-methionine  (EXP)
leflunomide  (ISO)
metformin  (ISO)
methimazole  (ISO)
methotrexate  (ISO)
methylmercury chloride  (ISO)
methylmercury(1+)  (ISO)
methylseleninic acid  (ISO)
N(4)-hydroxycytidine  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
nefazodone  (ISO)
nickel atom  (ISO)
omeprazole  (ISO)
oxaliplatin  (ISO)
ozone  (EXP)
p-chloromercuribenzoic acid  (ISO)
paclitaxel  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (ISO)
phenylephrine  (ISO)
phenylmercury acetate  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (EXP,ISO)
propiconazole  (EXP)
resveratrol  (ISO)
rotenone  (EXP,ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
streptozocin  (ISO)
sulfadimethoxine  (ISO)
sunitinib  (ISO)
tamoxifen  (EXP)
tebufenpyrad  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (EXP,ISO)
thifluzamide  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
tolcapone  (ISO)
toluene  (ISO)
topotecan  (ISO)
triadimefon  (ISO)
Tributyltin oxide  (EXP,ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
Triptolide  (EXP)
triptonide  (EXP)
trovafloxacin  (EXP)
tunicamycin  (EXP,ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
vincristine  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)
XAV939  (EXP,ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1371974   PMID:8889548   PMID:10349636   PMID:10777215   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11278933   PMID:11986327   PMID:12130540   PMID:12213205   PMID:12466851  
PMID:12477932   PMID:12904583   PMID:14681479   PMID:15489334   PMID:16141072   PMID:16141073   PMID:16602821   PMID:17823250   PMID:18195013   PMID:18228065   PMID:18287559   PMID:18799693  
PMID:19293535   PMID:19376136   PMID:19712269   PMID:20059953   PMID:20211142   PMID:20495567   PMID:21267068   PMID:21606205   PMID:21677750   PMID:21725368   PMID:21768648   PMID:21873635  
PMID:22095825   PMID:22936798   PMID:22974638   PMID:22988430   PMID:23090999   PMID:23518711   PMID:23761072   PMID:24120133   PMID:24216764   PMID:25437545   PMID:25704077   PMID:26395637  
PMID:26446231   PMID:26651292   PMID:27106802   PMID:28115692   PMID:28861715   PMID:30037996   PMID:31274354   PMID:31524288   PMID:31569049   PMID:33790322   PMID:33825962   PMID:35988140  
PMID:36332794   PMID:36436799   PMID:37095454   PMID:37256362   PMID:37286744   PMID:38388750   PMID:38472656  


Genomics

Comparative Map Data
Atf5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,461,680 - 44,466,082 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,461,680 - 44,466,082 (-)EnsemblGRCm39 Ensembl
GRCm38744,812,256 - 44,816,658 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl744,812,256 - 44,816,658 (-)EnsemblGRCm38mm10GRCm38
MGSCv37752,067,626 - 52,072,028 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36744,680,300 - 44,684,614 (-)NCBIMGSCv36mm8
Celera740,262,568 - 40,266,954 (-)NCBICelera
Cytogenetic Map7B3NCBI
cM Map728.92NCBI
ATF5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381949,928,906 - 49,933,935 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1949,928,702 - 49,933,935 (+)EnsemblGRCh38hg38GRCh38
GRCh371950,432,163 - 50,437,192 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361955,124,272 - 55,129,003 (+)NCBINCBI36Build 36hg18NCBI36
Build 341955,124,271 - 55,129,003NCBI
Celera1947,301,474 - 47,306,707 (+)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1946,808,214 - 46,813,450 (+)NCBIHuRef
CHM1_11950,433,787 - 50,439,041 (+)NCBICHM1_1
T2T-CHM13v2.01952,929,042 - 52,934,069 (+)NCBIT2T-CHM13v2.0
Atf5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81104,432,094 - 104,437,611 (-)NCBIGRCr8
mRatBN7.2195,295,602 - 95,299,755 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl195,295,610 - 95,299,707 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1100,681,410 - 100,683,691 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01109,154,075 - 109,156,356 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01102,444,482 - 102,446,763 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01100,807,821 - 100,812,410 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1100,808,241 - 100,810,522 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01101,872,584 - 101,876,673 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4195,284,505 - 95,286,786 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1195,362,195 - 95,366,285 (-)NCBI
Celera189,558,041 - 89,560,322 (-)NCBICelera
Cytogenetic Map1q22NCBI
Atf5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555591,008,208 - 1,013,023 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555591,008,208 - 1,013,023 (-)NCBIChiLan1.0ChiLan1.0
ATF5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22056,044,054 - 56,049,262 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11957,965,438 - 57,970,099 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01946,941,480 - 46,946,697 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11955,857,945 - 55,862,548 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1955,859,476 - 55,861,708 (+)Ensemblpanpan1.1panPan2
ATF5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11106,631,711 - 106,636,477 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1106,632,353 - 106,636,502 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1106,215,152 - 106,220,073 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01107,153,125 - 107,158,038 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1107,153,129 - 107,157,813 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11106,825,274 - 106,830,197 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01106,467,446 - 106,472,353 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01107,307,723 - 107,312,643 (-)NCBIUU_Cfam_GSD_1.0
Atf5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934922,095,400 - 22,102,389 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366643,713,527 - 3,717,824 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366643,713,527 - 3,717,824 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATF5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl654,945,119 - 54,950,137 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1654,945,067 - 54,950,142 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2650,726,686 - 50,731,281 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATF5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1643,085,634 - 43,090,234 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl643,084,665 - 43,091,751 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607323,060,422 - 23,065,876 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atf5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248324,396,604 - 4,405,185 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248324,400,586 - 4,405,203 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Atf5
95 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:632
Count of miRNA genes:244
Interacting mature miRNAs:298
Transcripts:ENSMUST00000047356, ENSMUST00000107893
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71663729349159331Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1301622Eae12_msusceptibility to experimental allergic encephalomyelitis 12 (mouse)Not determined71928001553280104Mouse
1301052Bhr6_mbronchial hyperresponsiveness 6 (mouse)Not determined71984225053842367Mouse
12904742Litsq2_mlitter size QTL 2 (mouse)72267388756674033Mouse
1301709Bdt4_mbone density traits 4 (mouse)Not determined72288857256888716Mouse
11354952Pdcc1_mplasmacytoid dentritic cell compartment 1 (mouse)72306653157066531Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72684761560851775Mouse
12790989Tgl6_mtriglyceride 6 (mouse)72754054961540549Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3003248581135653Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301175Ap7q_malcohol preference 7 QTL (mouse)Not determined73171484565715077Mouse
1300996Aorls2_maortic lesion size 2 (mouse)Not determined73239453266394681Mouse
4142003W3q10_mweight 3 weeks QTL 10 (mouse)Not determined3349772758148965Mouse
4142102Tailq5_mtail length QTL 5 (mouse)Not determined3349772758148965Mouse
4142218W6q17_mweight 6 weeks QTL 17 (mouse)Not determined3349772758148965Mouse
4141909W10q18_mweight 10 weeks QTL 18 (mouse)Not determined3349772758148965Mouse
1357883Epfq5_mepididymal fat pad weight QTL 5 (mouse)Not determined73349772758148965Mouse
1357634Splq7_mspleen weight QTL 7 (mouse)Not determined73349772758148965Mouse
39128210Lwq19_mliver weight QTL 19 (mouse)73349772758148965Mouse
1357469Kidq5_mkidney weight QTL 5 (mouse)Not determined73349772758148965Mouse
1559000Ossc1_mosteosarcoma susceptibility 1 (mouse)Not determined73405302568053223Mouse
38501071Stsl6_mSalmonella typhimurium susceptibility locus 6 (mouse)73419942551149748Mouse
10045622Heal20_mwound healing/regeneration 20 (mouse)Not determined73431688768317043Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73444786968448018Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73628001592394346Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
25314301Vmm3_mvariable multisystem mineralization 3, lung (mouse)73729942572049748Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73729942587049208Mouse
1300878Skts1_mskin tumor susceptibility 1 (mouse)Not determined73789138671891582Mouse
10402488Dipa2_mdrug induced psychomotor activation 2 (mouse)Not determined73842154872421684Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
11252140Fdr1_mfat response to dietary restriction 1 (mouse)74114882075148965Mouse
4141929Chlq18_mcirculating hormone level QTL 18 (mouse)Not determined74114882075148965Mouse
25394571Skmw59_mskeletal muscle weight 59, TA (mouse)74422494344675382Mouse
25394574Skmw61_mskeletal muscle weight 61, EDL (mouse)74422494344675382Mouse

Markers in Region
AB012276  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38744,812,677 - 44,812,786UniSTSGRCm38
MGSCv37752,068,047 - 52,068,156UniSTSGRCm37
Celera740,262,989 - 40,263,098UniSTS
Cytogenetic Map7B4UniSTS
Whitehead/MRC_RH7561.24UniSTS
Atf5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7B4UniSTS
cM Map728.92UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_030693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_033136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB012276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC158231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF310624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF312938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF375475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF375476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI851042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK131939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY024362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY115107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC092068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY307992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000047356   ⟹   ENSMUSP00000047771
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,461,680 - 44,466,082 (-)Ensembl
GRCm38.p6 Ensembl744,812,256 - 44,816,658 (-)Ensembl
RefSeq Acc Id: ENSMUST00000107893   ⟹   ENSMUSP00000103525
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,461,681 - 44,465,082 (-)Ensembl
GRCm38.p6 Ensembl744,812,257 - 44,815,658 (-)Ensembl
RefSeq Acc Id: ENSMUST00000209072   ⟹   ENSMUSP00000146755
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,462,539 - 44,465,998 (-)Ensembl
GRCm38.p6 Ensembl744,813,115 - 44,816,574 (-)Ensembl
RefSeq Acc Id: NM_030693   ⟹   NP_109618
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,461,680 - 44,465,082 (-)NCBI
GRCm38744,812,256 - 44,815,658 (-)NCBI
MGSCv37752,067,626 - 52,072,028 (-)RGD
Celera740,262,568 - 40,266,954 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_033136
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,461,680 - 44,466,082 (-)NCBI
GRCm38744,812,256 - 44,816,658 (-)ENTREZGENE
MGSCv37752,067,626 - 52,072,028 (-)RGD
Celera740,262,568 - 40,266,954 (-)RGD
cM Map7 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_109618   ⟸   NM_030693
- UniProtKB: Q58E51 (UniProtKB/Swiss-Prot),   Q99NH6 (UniProtKB/Swiss-Prot),   O70191 (UniProtKB/Swiss-Prot),   Q3UJF3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000103525   ⟸   ENSMUST00000107893
RefSeq Acc Id: ENSMUSP00000047771   ⟸   ENSMUST00000047356
RefSeq Acc Id: ENSMUSP00000146755   ⟸   ENSMUST00000209072
Protein Domains
bZIP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O70191-F1-model_v2 AlphaFold O70191 1-283 view protein structure

Promoters
RGD ID:8663895
Promoter ID:EPDNEW_M9978
Type:initiation region
Name:Atf5_2
Description:Mus musculus activating transcription factor 5 , transcript variant2, non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M9979  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38744,815,670 - 44,815,730EPDNEW
RGD ID:8663897
Promoter ID:EPDNEW_M9979
Type:initiation region
Name:Atf5_1
Description:Mus musculus activating transcription factor 5 , transcript variant2, non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M9978  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38744,816,599 - 44,816,659EPDNEW
RGD ID:6840681
Promoter ID:MM_KWN:50294
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000107891,   NM_030693,   OTTMUST00000049972,   OTTMUST00000073033,   UC009GQX.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36752,069,866 - 52,072,047 (-)MPROMDB
RGD ID:6840657
Promoter ID:MM_KWN:50295
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_030693_ATF5,   NR_033136
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36752,071,776 - 52,072,972 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2141857 AgrOrtholog
Ensembl Genes ENSMUSG00000038539 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000047356.11 UniProtKB/Swiss-Prot
  ENSMUST00000107893 ENTREZGENE
  ENSMUST00000107893.9 UniProtKB/Swiss-Prot
  ENSMUST00000209072.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro bZIP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  bZIP_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:107503 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2141857 ENTREZGENE
NCBI Gene 107503 ENTREZGENE
PANTHER ACTIVATING TRANSCRIPTION FACTOR ATF 4/5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13044:SF3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam bZIP_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Atf5 PhenoGen
PRINTS PRICHEXTENSN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE BZIP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART BRLZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57959 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A140LIB7_MOUSE UniProtKB/TrEMBL
  ATF5_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3TVK2_MOUSE UniProtKB/TrEMBL
  Q3UJF3 ENTREZGENE, UniProtKB/TrEMBL
  Q58E51 ENTREZGENE
  Q99NH6 ENTREZGENE
UniProt Secondary Q58E51 UniProtKB/Swiss-Prot
  Q99NH6 UniProtKB/Swiss-Prot