Acaca (acetyl-Coenzyme A carboxylase alpha) - Rat Genome Database

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Gene: Acaca (acetyl-Coenzyme A carboxylase alpha) Mus musculus
Analyze
Symbol: Acaca
Name: acetyl-Coenzyme A carboxylase alpha
RGD ID: 1552388
MGI Page MGI
Description: Enables acetyl-CoA carboxylase activity. Involved in acetyl-CoA metabolic process; fatty acid biosynthetic process; and protein homotetramerization. Acts upstream of or within several processes, including cellular response to prostaglandin E stimulus; lipid homeostasis; and tissue homeostasis. Located in cytosol. Is expressed in several structures, including alimentary system; integumental system; nervous system; respiratory system; and sensory organ. Orthologous to human ACACA (acetyl-CoA carboxylase alpha).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A530025K05Rik; Ac; Acac; Acc; ACC-alpha; Acc1; acetyl-CoA carboxylase 1; acetyl-CoA carboxylase 265; Gm738
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm5182  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391184,020,461 - 84,292,477 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1184,020,498 - 84,292,477 (+)EnsemblGRCm39 Ensembl
GRCm381184,129,635 - 84,401,651 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1184,129,672 - 84,401,651 (+)EnsemblGRCm38mm10GRCm38
MGSCv371184,008,940 - 84,215,153 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361184,011,659 - 84,215,878 (+)NCBIMGSCv36mm8
Celera1193,804,708 - 94,012,980 (+)NCBICelera
Cytogenetic Map11CNCBI
cM Map1151.29NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-pinoresinol  (ISO)
(-)-epigallocatechin 3-gallate  (EXP)
(1->4)-beta-D-glucan  (EXP)
(S)-nicotine  (ISO)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1,3-dichloropropan-2-ol  (EXP)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2,2-tetramine  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
2-amino-2-deoxy-D-glucopyranose  (ISO)
2-hydroxypropanoic acid  (ISO)
2-methylcholine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,3',5,5'-tetrabromobisphenol A  (EXP)
3,3',5-triiodo-L-thyronine  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-chloropropane-1,2-diol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (EXP,ISO)
4,4'-sulfonyldiphenol  (EXP)
4-tert-Octylphenol  (ISO)
5-(2-chloroethyl)-4-methylthiazole  (EXP)
5-aza-2'-deoxycytidine  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (ISO)
6-(4-chlorophenyl)imidazo[2,1-b][1,3]thiazole-5-carbaldehyde O-(3,4-dichlorobenzyl)oxime  (ISO)
6-chloro-2,3,4,9-tetrahydro-1H-carbazole-1-carboxamide  (ISO)
6-propyl-2-thiouracil  (ISO)
9-oxononanoic acid  (ISO)
acadesine  (ISO)
acetamide  (ISO)
Acetyl tributyl citrate  (EXP,ISO)
acetylsalicylic acid  (ISO)
acrolein  (ISO)
acrylamide  (EXP)
Aescin  (EXP,ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
AICA ribonucleotide  (EXP,ISO)
aldehydo-D-glucosamine  (ISO)
aldehydo-D-glucose  (EXP,ISO)
all-trans-retinoic acid  (ISO)
alpha-linolenic acid  (ISO)
alpha-pinene  (ISO)
amiodarone  (ISO)
amitrole  (ISO)
amlexanox  (EXP)
ammonium chloride  (ISO)
amphetamine  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
aristolochic acids  (ISO)
arsane  (EXP,ISO)
arsenic atom  (EXP,ISO)
arsenite(3-)  (ISO)
arsenous acid  (EXP)
atrazine  (EXP)
azoxystrobin  (EXP,ISO)
benzbromarone  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
benzo[e]pyrene  (ISO)
benzylpenicillin  (EXP)
beta-D-glucosamine  (ISO)
bexarotene  (ISO)
bezafibrate  (EXP)
biguanides  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
brexpiprazole  (ISO)
buspirone  (ISO)
Butylbenzyl phthalate  (EXP)
C60 fullerene  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
cannabidiol  (EXP)
capsazepine  (EXP)
carbendazim  (EXP)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chenodeoxycholic acid  (EXP)
chicoric acid  (ISO)
chloroethene  (EXP)
chlorpromazine  (ISO)
chlorpyrifos  (EXP,ISO)
cholesterol  (EXP)
choline  (EXP,ISO)
cis-caffeic acid  (ISO)
cisplatin  (EXP,ISO)
clobetasol  (EXP)
clofazimine  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
colforsin daropate hydrochloride  (EXP)
cordycepin  (ISO)
corn oil  (ISO)
corticosterone  (ISO)
cortisol  (ISO)
crizotinib  (ISO)
curcumin  (EXP,ISO)
cyanocob(III)alamin  (ISO)
cyclosporin A  (EXP,ISO)
cyhalothrin  (EXP,ISO)
D-glucose  (EXP,ISO)
DDE  (EXP)
deoxypodophyllotoxin  (EXP,ISO)
dexamethasone  (EXP,ISO)
dextran sulfate  (EXP)
Di-n-octyl phthalate  (EXP)
diarsenic trioxide  (EXP)
dibutyl phthalate  (EXP)
dichloroacetic acid  (EXP)
dicrotophos  (ISO)
diethyl maleate  (EXP)
diethyl phthalate  (EXP)
Diisodecyl phthalate  (EXP)
diisononyl phthalate  (EXP)
Diosbulbin B  (EXP)
diosgenin  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
duvoglustat  (EXP)
Elemicin  (EXP)
endosulfan  (ISO)
epoxiconazole  (EXP)
erlotinib hydrochloride  (ISO)
erythromycin A  (EXP)
ethanol  (EXP,ISO)
ethyl methanesulfonate  (ISO)
fenofibrate  (EXP,ISO)
fipronil  (EXP)
flavonoids  (ISO)
fluoxetine  (ISO)
folic acid  (EXP,ISO)
formaldehyde  (ISO)
FR900359  (ISO)
fructose  (EXP,ISO)
furan  (ISO)
gadolinium atom  (ISO)
gadolinium trichloride  (EXP,ISO)
Ganoderic acid A  (EXP,ISO)
Gastrodin  (EXP)
gentamycin  (ISO)
Geraniin  (EXP)
geraniol  (EXP)
glafenine  (ISO)
glucose  (EXP,ISO)
glycine betaine  (ISO)
glyphosate  (EXP)
gold atom  (ISO)
gold(0)  (ISO)
guggulsterone  (EXP)
GW 4064  (ISO)
hexadecanoic acid  (EXP,ISO)
Honokiol  (ISO)
hydrogen peroxide  (EXP,ISO)
indometacin  (ISO)
irinotecan  (ISO)
isoprenaline  (EXP,ISO)
isosilybin  (ISO)
isotretinoin  (ISO)
ivermectin  (EXP,ISO)
L-ethionine  (ISO)
L-methionine  (EXP,ISO)
lead diacetate  (EXP)
lead(0)  (EXP)
linoleic acid  (ISO)
lipopolysaccharide  (EXP)
liraglutide  (EXP)
lithocholic acid  (EXP)
loliolide  (ISO)
lovastatin  (EXP)
mangiferin  (ISO)
metformin  (EXP,ISO)
methapyrilene  (ISO)
methimazole  (ISO)
methoxychlor  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (EXP)
metronidazole  (EXP)
miconazole  (EXP)
microcystin-LR  (EXP)
monocrotophos  (ISO)
monosodium L-glutamate  (EXP)
myriocin  (EXP)
N-ethyl-N-nitrosourea  (EXP)
N-nitrosodiethylamine  (ISO)
naringin  (EXP)
nefazodone  (ISO)
neomycin  (EXP)
niclosamide  (ISO)
nicotinamide  (ISO)
nicotine  (ISO)
nilotinib  (ISO)
nimesulide  (ISO)
nordihydroguaiaretic acid  (ISO)
obeticholic acid  (ISO)
olanzapine  (EXP)
olaparib  (EXP)
oleic acid  (ISO)
omeprazole  (ISO)
orlistat  (ISO)
oxaliplatin  (ISO)
ozone  (EXP,ISO)
p-tert-Amylphenol  (ISO)
Pachymic acid  (ISO)
paracetamol  (EXP)
paraquat  (EXP,ISO)
PD 0325901  (ISO)
penconazole  (EXP)
perfluorobutanesulfonic acid  (EXP)
perfluorobutyric acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP,ISO)
phenformin  (ISO)
phenylmercury acetate  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
pirinixic acid  (EXP,ISO)
platycodin D  (EXP)
pregnenolone 16alpha-carbonitrile  (EXP)
propamocarb  (EXP)
protein kinase inhibitor  (ISO)
puerarin  (EXP)
pyruvic acid  (ISO)
quercetin  (EXP,ISO)
quinacrine  (ISO)
rac-lactic acid  (ISO)
raffinose  (EXP,ISO)
raspberry ketone  (EXP)
resveratrol  (EXP,ISO)
rifampicin  (EXP)
rimonabant  (EXP)
rosiglitazone  (ISO)
rosmarinic acid  (ISO)
rotenone  (ISO)
rubimaillin  (ISO)
ruthenium red  (EXP)
S-allylcysteine  (ISO)
SB 431542  (ISO)
scopoletin  (ISO)
sertraline  (ISO)
silibinin  (EXP,ISO)
sirtinol  (ISO)
sodium arsenite  (EXP,ISO)
splitomicin  (ISO)
steviol  (EXP)
streptozocin  (EXP,ISO)
sucrose  (EXP,ISO)
sulindac  (ISO)
sunitinib  (ISO)
taurine  (EXP,ISO)
testosterone  (EXP)
tetrachloromethane  (EXP)
tetracycline  (EXP)
tetrathiomolybdate(2-)  (EXP)
thapsigargin  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
trametinib  (ISO)
trans-caffeic acid  (ISO)
triacsin C  (EXP)
triazines  (EXP)
tributylstannane  (EXP)
Tributyltin oxide  (EXP)
trichloroethene  (ISO)
triclocarban  (ISO)
triolein  (EXP)
triphenyl phosphate  (ISO)
Triptolide  (EXP)
trovafloxacin  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
ursolic acid  (ISO)
valdecoxib  (ISO)
valproic acid  (EXP,ISO)
vancomycin  (EXP)
vanillic acid  (ISO)
vemurafenib  (ISO)
vinclozolin  (ISO)
WIN 55212-2  (ISO)
withaferin A  (EXP)
zidovudine  (ISO)
zinc atom  (EXP,ISO)
zinc(0)  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
actin cytoskeleton  (ISO)
cytoplasm  (IEA)
cytosol  (IDA,IGI,ISO)
fibrillar center  (ISO)
mitochondrion  (HDA,IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Fermented rice bran supplementation mitigates metabolic syndrome in stroke-prone spontaneously hypertensive rats. Alauddin M, etal., BMC Complement Altern Med. 2016 Nov 8;16(1):442. doi: 10.1186/s12906-016-1427-z.
2. The cytoskeleton in 'couch potato-ism': Insights from a murine model of impaired actin dynamics. Gertz K, etal., Exp Neurol. 2018 Aug;306:34-44. doi: 10.1016/j.expneurol.2018.04.004. Epub 2018 Apr 21.
3. Therapeutic Effect of Gypenosides on Nonalcoholic Steatohepatitis via Regulating Hepatic Lipogenesis and Fatty Acid Oxidation. Li H, etal., Biol Pharm Bull. 2017;40(5):650-657. doi: 10.1248/bpb.b16-00942.
4. Fatty acid synthase and the lipogenic phenotype in cancer pathogenesis. Menendez JA and Lupu R, Nat Rev Cancer. 2007 Oct;7(10):763-77.
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. MGD IEA MGD IEA
7. Effect of cold acclimation on brown adipose tissue fatty acid synthesis in rats adapted to a high-protein, carbohydrate-free diet. Moura MA, etal., Metabolism. 2001 Dec;50(12):1493-8.
8. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
9. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
10. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
11. Mouse MP Annotation Import Pipeline RGD automated import pipeline
12. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
14. Reversal of diet-induced hepatic steatosis and hepatic insulin resistance by antisense oligonucleotide inhibitors of acetyl-CoA carboxylases 1 and 2. Savage DB, etal., J Clin Invest. 2006 Mar;116(3):817-24. Epub 2006 Feb 16.
15. Effect of Creosote Bush-Derived NDGA on Expression of Genes Involved in Lipid Metabolism in Liver of High-Fructose Fed Rats: Relevance to NDGA Amelioration of Hypertriglyceridemia and Hepatic Steatosis. Zhang H, etal., PLoS One. 2015 Sep 22;10(9):e0138203. doi: 10.1371/journal.pone.0138203. eCollection 2015.
16. Dingxin Recipe IV attenuates atherosclerosis by regulating lipid metabolism through LXR-α/SREBP1 pathway and modulating the gut microbiota in ApoE-/- mice fed with HFD. Zhang Y, etal., J Ethnopharmacol. 2021 Feb 10;266:113436. doi: 10.1016/j.jep.2020.113436. Epub 2020 Oct 1.
Additional References at PubMed
PMID:7803821   PMID:8833906   PMID:8889548   PMID:8954960   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11254743   PMID:11907024   PMID:12360400   PMID:12466851  
PMID:12477932   PMID:12520002   PMID:12642900   PMID:12668174   PMID:14610273   PMID:14662765   PMID:14668353   PMID:14681479   PMID:14691545   PMID:15489334   PMID:15607423   PMID:15749055  
PMID:16103361   PMID:16141072   PMID:16141073   PMID:16717184   PMID:16794074   PMID:17208939   PMID:17210641   PMID:18040027   PMID:18227155   PMID:18614015   PMID:18799693   PMID:19217427  
PMID:19343720   PMID:19805143   PMID:20457939   PMID:20603810   PMID:20952656   PMID:21267068   PMID:21281598   PMID:21436046   PMID:21677750   PMID:21873635   PMID:22872236   PMID:23435420  
PMID:23479225   PMID:23785098   PMID:24086110   PMID:24185692   PMID:24338821   PMID:24457600   PMID:24565757   PMID:24567531   PMID:24717294   PMID:24944901   PMID:25001074   PMID:25249504  
PMID:25282359   PMID:25505152   PMID:26043180   PMID:26220403   PMID:26235623   PMID:26296893   PMID:26299309   PMID:26378152   PMID:26508642   PMID:26685326   PMID:27113764   PMID:27307439  
PMID:27338930   PMID:27378422   PMID:27381369   PMID:27524625   PMID:27659423   PMID:27689697   PMID:27746183   PMID:27858140   PMID:27974211   PMID:28162974   PMID:28290443   PMID:28358365  
PMID:28364022   PMID:28768177   PMID:28877461   PMID:29056512   PMID:29385670   PMID:29433631   PMID:29976587   PMID:30018077   PMID:30244972   PMID:30334081   PMID:30457570   PMID:30550785  
PMID:30892081   PMID:31177975   PMID:31990961   PMID:32215608   PMID:32694673   PMID:32694782   PMID:33059001   PMID:33251722   PMID:33505018   PMID:34128473   PMID:34188173   PMID:34668531  
PMID:34813654   PMID:35304577   PMID:35863637   PMID:36001969   PMID:36076520   PMID:36114006   PMID:36198274   PMID:36417534   PMID:36417873   PMID:36607556   PMID:36920044   PMID:38042368  
PMID:38191655   PMID:38395901  


Genomics

Comparative Map Data
Acaca
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391184,020,461 - 84,292,477 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1184,020,498 - 84,292,477 (+)EnsemblGRCm39 Ensembl
GRCm381184,129,635 - 84,401,651 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1184,129,672 - 84,401,651 (+)EnsemblGRCm38mm10GRCm38
MGSCv371184,008,940 - 84,215,153 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361184,011,659 - 84,215,878 (+)NCBIMGSCv36mm8
Celera1193,804,708 - 94,012,980 (+)NCBICelera
Cytogenetic Map11CNCBI
cM Map1151.29NCBI
ACACA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381737,084,992 - 37,406,836 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1737,084,992 - 37,406,836 (-)EnsemblGRCh38hg38GRCh38
GRCh371735,441,927 - 35,766,927 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361732,516,040 - 32,841,015 (-)NCBINCBI36Build 36hg18NCBI36
Build 341732,516,039 - 32,841,015NCBI
Celera1732,264,387 - 32,589,361 (-)NCBICelera
Cytogenetic Map17q12NCBI
HuRef1731,594,734 - 31,704,859 (-)NCBIHuRef
HuRef1731,378,027 - 31,583,939 (-)NCBIHuRef
CHM1_11735,476,555 - 35,798,374 (-)NCBICHM1_1
T2T-CHM13v2.01738,071,975 - 38,396,996 (-)NCBIT2T-CHM13v2.0
Acaca
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81069,511,627 - 69,773,888 (+)NCBIGRCr8
mRatBN7.21069,014,261 - 69,276,453 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1069,014,170 - 69,276,457 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1073,702,781 - 73,894,445 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01073,207,804 - 73,399,466 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01068,672,215 - 68,863,878 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01071,519,392 - 71,719,910 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1071,536,533 - 71,719,910 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01071,431,885 - 71,630,271 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41072,483,772 - 72,677,134 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11072,498,141 - 72,691,504 (+)NCBI
Celera1068,011,070 - 68,201,435 (+)NCBICelera
Cytogenetic Map10q26NCBI
Acaca
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955451600,254 - 909,892 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955451679,033 - 909,892 (+)NCBIChiLan1.0ChiLan1.0
ACACA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21927,347,009 - 27,678,249 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11729,230,527 - 29,559,723 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01719,670,114 - 19,998,903 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11719,969,199 - 20,297,651 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1719,969,205 - 20,297,651 (+)Ensemblpanpan1.1panPan2
ACACA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1936,904,204 - 37,188,096 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl936,905,293 - 37,187,892 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha936,128,994 - 36,412,715 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0937,714,414 - 37,998,482 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl937,714,417 - 37,998,015 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1936,495,840 - 36,779,686 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0936,783,386 - 37,067,528 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0936,870,310 - 37,154,200 (-)NCBIUU_Cfam_GSD_1.0
Acaca
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560235,883,567 - 36,147,281 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936490927,769 - 1,191,481 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936490927,769 - 1,191,483 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACACA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1238,581,457 - 38,824,712 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11238,580,916 - 38,875,067 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21240,200,228 - 40,401,426 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACACA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11630,374,166 - 30,704,635 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1630,452,343 - 30,705,004 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660771,098,931 - 1,432,102 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Acaca
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248714,105,067 - 4,412,325 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248714,103,014 - 4,364,690 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Acaca
8221 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2077
Count of miRNA genes:667
Interacting mature miRNAs:828
Transcripts:ENSMUST00000020843, ENSMUST00000103201, ENSMUST00000130012, ENSMUST00000133811, ENSMUST00000136463, ENSMUST00000137500, ENSMUST00000183548, ENSMUST00000183887, ENSMUST00000184534
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
1301078Alcp2_malcohol preference locus 2 (mouse)Not determined117220979684731462Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177063779111063918Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177437183111437322Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177437183111437322Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117757387399377820Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177770978111771099Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179156009107616472Mouse
14746970Manh71_mmandible shape 71 (mouse)1179416257113416257Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179813759104502698Mouse
27226758Femd3_mfemur midshaft diameter 3, 5 week (mouse)1180890826101890826Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181574481115574636Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181810267115810267Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse

Markers in Region
Acac  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381210,156,607 - 10,156,667UniSTSGRCm38
GRCm381184,346,045 - 84,346,723UniSTSGRCm38
MGSCv371184,159,547 - 84,160,225UniSTSGRCm37
MGSCv371210,163,413 - 10,163,473UniSTSGRCm37
Celera1193,955,153 - 93,955,831UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map12A1.1UniSTS
cM Map11 UniSTS
UniSTS:236677  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381210,159,253 - 10,159,372UniSTSGRCm38
GRCm381184,400,701 - 84,400,820UniSTSGRCm38
MGSCv371184,214,203 - 84,214,322UniSTSGRCm37
MGSCv371210,166,059 - 10,166,178UniSTSGRCm37
Celera1194,012,030 - 94,012,149UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map12A1.1UniSTS
UniSTS:224569  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381184,328,586 - 84,328,785UniSTSGRCm38
MGSCv371184,142,088 - 84,142,287UniSTSGRCm37
Celera1193,937,668 - 93,937,867UniSTS
Cytogenetic Map11CUniSTS
Acaca  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381210,152,335 - 10,153,281UniSTSGRCm38
MGSCv371210,159,141 - 10,160,087UniSTSGRCm37
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map11CUniSTS
D17S1255  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381210,152,962 - 10,153,071UniSTSGRCm38
GRCm381184,249,442 - 84,249,551UniSTSGRCm38
MGSCv371184,062,944 - 84,063,053UniSTSGRCm37
MGSCv371210,159,768 - 10,159,877UniSTSGRCm37
Celera1193,858,421 - 93,858,530UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map12A1.1UniSTS
Acaca  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11CUniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_133360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006531953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006531954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006531955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006531956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF289714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF374167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF374168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF374169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF374170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ619664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ619665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK047036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL596252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL596447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY451393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC042725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC049923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC056500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC064472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY726813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF745722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN538919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN705188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000020843   ⟹   ENSMUSP00000020843
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1184,086,264 - 84,292,471 (+)Ensembl
GRCm38.p6 Ensembl1184,195,438 - 84,401,645 (+)Ensembl
RefSeq Acc Id: ENSMUST00000103201   ⟹   ENSMUSP00000099490
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1184,063,948 - 84,292,477 (+)Ensembl
GRCm38.p6 Ensembl1184,173,122 - 84,401,651 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130012   ⟹   ENSMUSP00000117972
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1184,070,657 - 84,122,518 (+)Ensembl
GRCm38.p6 Ensembl1184,179,831 - 84,231,692 (+)Ensembl
RefSeq Acc Id: ENSMUST00000133811   ⟹   ENSMUSP00000116174
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1184,020,498 - 84,105,116 (+)Ensembl
GRCm38.p6 Ensembl1184,129,672 - 84,214,290 (+)Ensembl
RefSeq Acc Id: ENSMUST00000136463   ⟹   ENSMUSP00000116295
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1184,070,684 - 84,105,010 (+)Ensembl
GRCm38.p6 Ensembl1184,179,858 - 84,214,184 (+)Ensembl
RefSeq Acc Id: ENSMUST00000137500   ⟹   ENSMUSP00000121274
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1184,070,657 - 84,105,021 (+)Ensembl
GRCm38.p6 Ensembl1184,179,831 - 84,214,195 (+)Ensembl
RefSeq Acc Id: ENSMUST00000183548
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1184,064,180 - 84,126,553 (+)Ensembl
GRCm38.p6 Ensembl1184,173,354 - 84,235,727 (+)Ensembl
RefSeq Acc Id: ENSMUST00000183887   ⟹   ENSMUSP00000139378
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1184,171,281 - 84,202,227 (+)Ensembl
GRCm38.p6 Ensembl1184,280,455 - 84,311,401 (+)Ensembl
RefSeq Acc Id: ENSMUST00000184534
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1184,020,526 - 84,023,937 (+)Ensembl
GRCm38.p6 Ensembl1184,129,700 - 84,133,111 (+)Ensembl
RefSeq Acc Id: NM_133360   ⟹   NP_579938
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391184,070,657 - 84,292,477 (+)NCBI
GRCm381184,195,438 - 84,401,651 (+)NCBI
MGSCv371184,008,940 - 84,215,153 (+)RGD
Celera1193,804,708 - 94,012,980 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006531953   ⟹   XP_006532016
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391184,020,491 - 84,292,477 (+)NCBI
GRCm381184,129,646 - 84,401,651 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006531954   ⟹   XP_006532017
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391184,064,149 - 84,292,477 (+)NCBI
GRCm381184,173,320 - 84,401,651 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006531955   ⟹   XP_006532018
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391184,070,506 - 84,292,477 (+)NCBI
GRCm381184,177,858 - 84,401,651 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006531956   ⟹   XP_006532019
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391184,064,151 - 84,292,477 (+)NCBI
GRCm381184,173,320 - 84,401,651 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011248666   ⟹   XP_011246968
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391184,070,506 - 84,292,477 (+)NCBI
GRCm381184,177,858 - 84,401,651 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011248667   ⟹   XP_011246969
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391184,020,461 - 84,292,477 (+)NCBI
GRCm381184,129,635 - 84,401,651 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245461   ⟹   XP_030101321
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391184,070,506 - 84,292,477 (+)NCBI
GRCm381184,177,858 - 84,401,651 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245462   ⟹   XP_030101322
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391184,071,087 - 84,292,477 (+)NCBI
GRCm381184,180,253 - 84,401,651 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245463   ⟹   XP_030101323
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391184,020,487 - 84,292,477 (+)NCBI
GRCm381184,129,661 - 84,401,651 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156215   ⟹   XP_036012108
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391184,020,531 - 84,292,477 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156216   ⟹   XP_036012109
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391184,020,509 - 84,292,477 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156217   ⟹   XP_036012110
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391184,070,477 - 84,292,477 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156218   ⟹   XP_036012111
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391184,070,506 - 84,292,477 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_579938 (Get FASTA)   NCBI Sequence Viewer  
  XP_006532016 (Get FASTA)   NCBI Sequence Viewer  
  XP_006532017 (Get FASTA)   NCBI Sequence Viewer  
  XP_006532018 (Get FASTA)   NCBI Sequence Viewer  
  XP_006532019 (Get FASTA)   NCBI Sequence Viewer  
  XP_011246968 (Get FASTA)   NCBI Sequence Viewer  
  XP_011246969 (Get FASTA)   NCBI Sequence Viewer  
  XP_030101321 (Get FASTA)   NCBI Sequence Viewer  
  XP_030101322 (Get FASTA)   NCBI Sequence Viewer  
  XP_030101323 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012108 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012109 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012110 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012111 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAG01858 (Get FASTA)   NCBI Sequence Viewer  
  AAH56500 (Get FASTA)   NCBI Sequence Viewer  
  AAK57389 (Get FASTA)   NCBI Sequence Viewer  
  AAK57390 (Get FASTA)   NCBI Sequence Viewer  
  AAK57391 (Get FASTA)   NCBI Sequence Viewer  
  AAK57392 (Get FASTA)   NCBI Sequence Viewer  
  AAS13685 (Get FASTA)   NCBI Sequence Viewer  
  CAF02251 (Get FASTA)   NCBI Sequence Viewer  
  CAF02252 (Get FASTA)   NCBI Sequence Viewer  
  EDL15735 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000020843
  ENSMUSP00000020843.7
  ENSMUSP00000099490
  ENSMUSP00000099490.2
  ENSMUSP00000116174.2
  ENSMUSP00000116295.3
  ENSMUSP00000117972.3
  ENSMUSP00000121274.3
  ENSMUSP00000139378.2
GenBank Protein Q5SWU9 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_579938   ⟸   NM_133360
- UniProtKB: Q925C4 (UniProtKB/Swiss-Prot),   Q91VC8 (UniProtKB/Swiss-Prot),   Q705X9 (UniProtKB/Swiss-Prot),   Q705X8 (UniProtKB/Swiss-Prot),   Q6PHL9 (UniProtKB/Swiss-Prot),   Q6JIZ1 (UniProtKB/Swiss-Prot),   Q5SWU8 (UniProtKB/Swiss-Prot),   Q5SWU7 (UniProtKB/Swiss-Prot),   Q5SWU6 (UniProtKB/Swiss-Prot),   A2A6H4 (UniProtKB/Swiss-Prot),   Q925C5 (UniProtKB/Swiss-Prot),   Q5SWU9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006532016   ⟸   XM_006531953
- Peptide Label: isoform X3
- UniProtKB: Q5SWU9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006532017   ⟸   XM_006531954
- Peptide Label: isoform X4
- UniProtKB: Q925C4 (UniProtKB/Swiss-Prot),   Q91VC8 (UniProtKB/Swiss-Prot),   Q705X9 (UniProtKB/Swiss-Prot),   Q705X8 (UniProtKB/Swiss-Prot),   Q6PHL9 (UniProtKB/Swiss-Prot),   Q6JIZ1 (UniProtKB/Swiss-Prot),   Q5SWU8 (UniProtKB/Swiss-Prot),   Q5SWU7 (UniProtKB/Swiss-Prot),   Q5SWU6 (UniProtKB/Swiss-Prot),   A2A6H4 (UniProtKB/Swiss-Prot),   Q925C5 (UniProtKB/Swiss-Prot),   Q5SWU9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006532019   ⟸   XM_006531956
- Peptide Label: isoform X4
- UniProtKB: Q925C4 (UniProtKB/Swiss-Prot),   Q91VC8 (UniProtKB/Swiss-Prot),   Q705X9 (UniProtKB/Swiss-Prot),   Q705X8 (UniProtKB/Swiss-Prot),   Q6PHL9 (UniProtKB/Swiss-Prot),   Q6JIZ1 (UniProtKB/Swiss-Prot),   Q5SWU8 (UniProtKB/Swiss-Prot),   Q5SWU7 (UniProtKB/Swiss-Prot),   Q5SWU6 (UniProtKB/Swiss-Prot),   A2A6H4 (UniProtKB/Swiss-Prot),   Q925C5 (UniProtKB/Swiss-Prot),   Q5SWU9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006532018   ⟸   XM_006531955
- Peptide Label: isoform X4
- UniProtKB: Q925C4 (UniProtKB/Swiss-Prot),   Q91VC8 (UniProtKB/Swiss-Prot),   Q705X9 (UniProtKB/Swiss-Prot),   Q705X8 (UniProtKB/Swiss-Prot),   Q6PHL9 (UniProtKB/Swiss-Prot),   Q6JIZ1 (UniProtKB/Swiss-Prot),   Q5SWU8 (UniProtKB/Swiss-Prot),   Q5SWU7 (UniProtKB/Swiss-Prot),   Q5SWU6 (UniProtKB/Swiss-Prot),   A2A6H4 (UniProtKB/Swiss-Prot),   Q925C5 (UniProtKB/Swiss-Prot),   Q5SWU9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011246969   ⟸   XM_011248667
- Peptide Label: isoform X4
- UniProtKB: Q925C4 (UniProtKB/Swiss-Prot),   Q91VC8 (UniProtKB/Swiss-Prot),   Q705X9 (UniProtKB/Swiss-Prot),   Q705X8 (UniProtKB/Swiss-Prot),   Q6PHL9 (UniProtKB/Swiss-Prot),   Q6JIZ1 (UniProtKB/Swiss-Prot),   Q5SWU8 (UniProtKB/Swiss-Prot),   Q5SWU7 (UniProtKB/Swiss-Prot),   Q5SWU6 (UniProtKB/Swiss-Prot),   A2A6H4 (UniProtKB/Swiss-Prot),   Q925C5 (UniProtKB/Swiss-Prot),   Q5SWU9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011246968   ⟸   XM_011248666
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_030101323   ⟸   XM_030245463
- Peptide Label: isoform X5
RefSeq Acc Id: XP_030101321   ⟸   XM_030245461
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030101322   ⟸   XM_030245462
- Peptide Label: isoform X4
- UniProtKB: Q925C4 (UniProtKB/Swiss-Prot),   Q91VC8 (UniProtKB/Swiss-Prot),   Q705X9 (UniProtKB/Swiss-Prot),   Q705X8 (UniProtKB/Swiss-Prot),   Q6PHL9 (UniProtKB/Swiss-Prot),   Q6JIZ1 (UniProtKB/Swiss-Prot),   Q5SWU9 (UniProtKB/Swiss-Prot),   Q5SWU8 (UniProtKB/Swiss-Prot),   Q5SWU7 (UniProtKB/Swiss-Prot),   Q5SWU6 (UniProtKB/Swiss-Prot),   A2A6H4 (UniProtKB/Swiss-Prot),   Q925C5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000117972   ⟸   ENSMUST00000130012
RefSeq Acc Id: ENSMUSP00000139378   ⟸   ENSMUST00000183887
RefSeq Acc Id: ENSMUSP00000020843   ⟸   ENSMUST00000020843
RefSeq Acc Id: ENSMUSP00000116174   ⟸   ENSMUST00000133811
RefSeq Acc Id: ENSMUSP00000121274   ⟸   ENSMUST00000137500
RefSeq Acc Id: ENSMUSP00000099490   ⟸   ENSMUST00000103201
RefSeq Acc Id: ENSMUSP00000116295   ⟸   ENSMUST00000136463
RefSeq Acc Id: XP_036012109   ⟸   XM_036156216
- Peptide Label: isoform X4
- UniProtKB: Q925C4 (UniProtKB/Swiss-Prot),   Q91VC8 (UniProtKB/Swiss-Prot),   Q705X9 (UniProtKB/Swiss-Prot),   Q705X8 (UniProtKB/Swiss-Prot),   Q6PHL9 (UniProtKB/Swiss-Prot),   Q6JIZ1 (UniProtKB/Swiss-Prot),   Q5SWU9 (UniProtKB/Swiss-Prot),   Q5SWU8 (UniProtKB/Swiss-Prot),   Q5SWU7 (UniProtKB/Swiss-Prot),   Q5SWU6 (UniProtKB/Swiss-Prot),   A2A6H4 (UniProtKB/Swiss-Prot),   Q925C5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036012108   ⟸   XM_036156215
- Peptide Label: isoform X4
- UniProtKB: Q925C4 (UniProtKB/Swiss-Prot),   Q91VC8 (UniProtKB/Swiss-Prot),   Q705X9 (UniProtKB/Swiss-Prot),   Q705X8 (UniProtKB/Swiss-Prot),   Q6PHL9 (UniProtKB/Swiss-Prot),   Q6JIZ1 (UniProtKB/Swiss-Prot),   Q5SWU9 (UniProtKB/Swiss-Prot),   Q5SWU8 (UniProtKB/Swiss-Prot),   Q5SWU7 (UniProtKB/Swiss-Prot),   Q5SWU6 (UniProtKB/Swiss-Prot),   A2A6H4 (UniProtKB/Swiss-Prot),   Q925C5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036012110   ⟸   XM_036156217
- Peptide Label: isoform X5
RefSeq Acc Id: XP_036012111   ⟸   XM_036156218
- Peptide Label: isoform X5
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5SWU9-F1-model_v2 AlphaFold Q5SWU9 1-2345 view protein structure

Promoters
RGD ID:6820249
Promoter ID:MM_KWN:8946
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:NM_133360
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361184,008,966 - 84,009,466 (+)MPROMDB
RGD ID:8675944
Promoter ID:EPDNEW_M16003
Type:initiation region
Name:Acaca_1
Description:Mus musculus acetyl-Coenzyme A carboxylase alpha , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16007  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381184,129,685 - 84,129,745EPDNEW
RGD ID:8675946
Promoter ID:EPDNEW_M16004
Type:initiation region
Name:AK040794_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381184,129,700 - 84,129,760EPDNEW
RGD ID:8675950
Promoter ID:EPDNEW_M16006
Type:multiple initiation site
Name:AF374167_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381184,173,298 - 84,173,358EPDNEW
RGD ID:8675952
Promoter ID:EPDNEW_M16007
Type:initiation region
Name:Acaca_2
Description:Mus musculus acetyl-Coenzyme A carboxylase alpha , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16003  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381184,179,831 - 84,179,891EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:108451 AgrOrtholog
Ensembl Genes ENSMUSG00000020532 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000020843 ENTREZGENE
  ENSMUST00000020843.13 UniProtKB/Swiss-Prot
  ENSMUST00000103201 ENTREZGENE
  ENSMUST00000103201.8 UniProtKB/Swiss-Prot
  ENSMUST00000130012.9 UniProtKB/TrEMBL
  ENSMUST00000133811.3 UniProtKB/TrEMBL
  ENSMUST00000136463.9 UniProtKB/TrEMBL
  ENSMUST00000137500.9 UniProtKB/TrEMBL
  ENSMUST00000183887.2 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.100 UniProtKB/Swiss-Prot
  3.30.1490.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATP-grasp fold, B domain UniProtKB/Swiss-Prot
  Biotin dependent carboxylase carboxyltransferase UniProtKB/Swiss-Prot
  PreATP-grasp domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ACCA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ACCA_BT UniProtKB/Swiss-Prot
  AcCoA_carboxyl UniProtKB/Swiss-Prot
  AcCoA_COase_cen UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATP-grasp UniProtKB/Swiss-Prot
  ATP_grasp_subdomain_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BC-like_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Biotin_BS UniProtKB/Swiss-Prot
  Biotin_carboxylation_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Biotin_COase_C UniProtKB/Swiss-Prot
  Biotin_lipoyl UniProtKB/Swiss-Prot
  CbamoylP_synth_lsu-like_ATP-bd UniProtKB/Swiss-Prot
  ClpP/crotonase-like_dom_sf UniProtKB/Swiss-Prot
  COA_CT_C UniProtKB/Swiss-Prot
  COA_CT_N UniProtKB/Swiss-Prot
  PreATP-grasp_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rudment_hybrid_motif UniProtKB/Swiss-Prot
  Single_hybrid_motif UniProtKB/Swiss-Prot
KEGG Report mmu:107476 UniProtKB/Swiss-Prot
MGD MGI:108451 ENTREZGENE
NCBI Gene 107476 ENTREZGENE
PANTHER ACETYL-COA CARBOXYLASE 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ACETYL-COA CARBOXYLASE, ISOFORM A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ACC_central UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ACCA_BT UniProtKB/Swiss-Prot
  Biotin_carb_C UniProtKB/Swiss-Prot
  Biotin_carb_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Biotin_lipoyl UniProtKB/Swiss-Prot
  Carboxyl_trans UniProtKB/Swiss-Prot
  CPSase_L_D2 UniProtKB/Swiss-Prot
PhenoGen Acaca PhenoGen
PROSITE ATP_GRASP UniProtKB/Swiss-Prot
  BIOTIN UniProtKB/Swiss-Prot
  BIOTINYL_LIPOYL UniProtKB/Swiss-Prot
  COA_CT_CTER UniProtKB/Swiss-Prot
  COA_CT_NTER UniProtKB/Swiss-Prot
  CPSASE_1 UniProtKB/Swiss-Prot
  CPSASE_2 UniProtKB/Swiss-Prot
  PS50979 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Biotin_carb_C UniProtKB/Swiss-Prot
Superfamily-SCOP Glutathione synthetase ATP-binding domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF51230 UniProtKB/Swiss-Prot
  SSF51246 UniProtKB/Swiss-Prot
  SSF52096 UniProtKB/Swiss-Prot
  SSF52440 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0R4J1S9_MOUSE UniProtKB/TrEMBL
  A2A6H4 ENTREZGENE
  ACACA_MOUSE UniProtKB/Swiss-Prot
  Q5SWU6 ENTREZGENE
  Q5SWU7 ENTREZGENE
  Q5SWU8 ENTREZGENE
  Q5SWU9 ENTREZGENE
  Q6JIZ1 ENTREZGENE
  Q6PHL9 ENTREZGENE
  Q705X8 ENTREZGENE
  Q705X9 ENTREZGENE
  Q91VC8 ENTREZGENE
  Q925C4 ENTREZGENE
  Q925C5 ENTREZGENE
  Q9ESZ5_MOUSE UniProtKB/TrEMBL
  V9GWR9_MOUSE UniProtKB/TrEMBL
  V9GWS0_MOUSE UniProtKB/TrEMBL
  V9GWS1_MOUSE UniProtKB/TrEMBL
  V9GXY1_MOUSE UniProtKB/TrEMBL
UniProt Secondary A2A6H4 UniProtKB/Swiss-Prot
  Q5SWU6 UniProtKB/Swiss-Prot
  Q5SWU7 UniProtKB/Swiss-Prot
  Q5SWU8 UniProtKB/Swiss-Prot
  Q6JIZ1 UniProtKB/Swiss-Prot
  Q6PHL9 UniProtKB/Swiss-Prot
  Q705X8 UniProtKB/Swiss-Prot
  Q705X9 UniProtKB/Swiss-Prot
  Q91VC8 UniProtKB/Swiss-Prot
  Q925C4 UniProtKB/Swiss-Prot
  Q925C5 UniProtKB/Swiss-Prot