Dnai4 (dynein axonemal intermediate chain 4) - Rat Genome Database

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Gene: Dnai4 (dynein axonemal intermediate chain 4) Mus musculus
Analyze
Symbol: Dnai4
Name: dynein axonemal intermediate chain 4
RGD ID: 1551829
MGI Page MGI
Description: Predicted to enable dynein heavy chain binding activity and dynein light chain binding activity. Involved in axonemal dynein complex assembly and cilium movement. Acts upstream of or within hematopoietic progenitor cell differentiation. Located in axoneme and motile cilium. Part of axonemal dynein complex. Is expressed in brain and olfactory epithelium. Orthologous to human DNAI4 (dynein axonemal intermediate chain 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BC028975; dynein intermediate chain 4, axonemal; MGC31722; MGC38950; WD repeat domain 78; WD repeat-containing protein 78; Wdr78
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394102,891,954 - 102,971,524 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4102,895,262 - 102,971,752 (-)EnsemblGRCm39 Ensembl
GRCm384103,038,065 - 103,114,299 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4103,038,065 - 103,114,555 (-)EnsemblGRCm38mm10GRCm38
MGSCv374102,710,670 - 102,786,904 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364102,536,001 - 102,612,156 (-)NCBIMGSCv36mm8
Celera4101,402,744 - 101,478,812 (-)NCBICelera
Cytogenetic Map4C6NCBI
cM Map447.28NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18799693   PMID:21267068  
PMID:21873635   PMID:24029230   PMID:30060180  


Genomics

Comparative Map Data
Dnai4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394102,891,954 - 102,971,524 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4102,895,262 - 102,971,752 (-)EnsemblGRCm39 Ensembl
GRCm384103,038,065 - 103,114,299 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4103,038,065 - 103,114,555 (-)EnsemblGRCm38mm10GRCm38
MGSCv374102,710,670 - 102,786,904 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364102,536,001 - 102,612,156 (-)NCBIMGSCv36mm8
Celera4101,402,744 - 101,478,812 (-)NCBICelera
Cytogenetic Map4C6NCBI
cM Map447.28NCBI
DNAI4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38166,812,885 - 66,924,856 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl166,812,885 - 66,924,856 (-)EnsemblGRCh38hg38GRCh38
GRCh37167,278,568 - 67,390,539 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36167,051,156 - 67,163,158 (-)NCBINCBI36Build 36hg18NCBI36
Celera165,568,539 - 65,680,519 (-)NCBICelera
Cytogenetic Map1p31.3NCBI
HuRef165,386,832 - 65,499,349 (-)NCBIHuRef
CHM1_1167,393,937 - 67,505,926 (-)NCBICHM1_1
T2T-CHM13v2.0166,690,412 - 66,802,384 (-)NCBIT2T-CHM13v2.0
Dnai4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85123,016,480 - 123,105,283 (-)NCBIGRCr8
mRatBN7.25117,787,398 - 117,876,216 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5117,788,464 - 117,876,127 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5120,420,400 - 120,508,962 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05122,145,751 - 122,234,315 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05122,197,015 - 122,285,581 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05122,551,370 - 122,642,161 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5122,551,405 - 122,642,202 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05126,478,242 - 126,507,661 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.05126,419,821 - 126,471,244 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45123,959,144 - 124,048,268 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15123,964,370 - 124,053,494 (-)NCBI
Celera5116,363,303 - 116,447,865 (-)NCBICelera
Cytogenetic Map5q33NCBI
Dnai4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542324,027,924 - 24,089,914 (+)NCBIChiLan1.0ChiLan1.0
DNAI4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21159,935,133 - 160,047,820 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11159,095,149 - 159,208,006 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0166,061,390 - 66,174,221 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1167,946,717 - 68,059,640 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl167,953,276 - 68,059,625 (-)Ensemblpanpan1.1panPan2
DNAI4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1543,590,200 - 43,690,293 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl543,590,239 - 43,689,339 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha543,713,901 - 43,814,576 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0543,775,487 - 43,876,196 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl543,775,828 - 43,876,050 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1543,741,398 - 43,841,871 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0543,687,497 - 43,787,955 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0543,927,523 - 44,028,271 (+)NCBIUU_Cfam_GSD_1.0
Dnai4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505879,739,535 - 79,846,629 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365914,642,762 - 4,750,006 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNAI4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6145,680,052 - 145,768,488 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16145,680,135 - 145,754,809 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
DNAI4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12066,189,698 - 66,295,628 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2066,189,723 - 66,294,478 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603351,300,092 - 51,405,974 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dnai4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474228,100,838 - 28,181,385 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dnai4
2817 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1883
Count of miRNA genes:478
Interacting mature miRNAs:548
Transcripts:ENSMUST00000036451, ENSMUST00000036557, ENSMUST00000106868, ENSMUST00000116316, ENSMUST00000136355, ENSMUST00000138960, ENSMUST00000148673, ENSMUST00000152647
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
27226724Tibw2_mtibia width 2, proximal, 10 week (mouse)443000000108357197Mouse
1558948Ath8_matherosclerosis 8 (mouse)Not determined445658442105156995Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
1300966Pabr2_mplasma apolipoprotein B (human) regulator 2 (mouse)Not determined446332646105801860Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
4141900Skts-fp1_mskin tumor susceptibility in FVB and PWK 1 (mouse)Not determined453550839124055180Mouse
26884434Zlq1_mzygomatic length QTL 1, 5 week (mouse)453700000103257197Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000128993793Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
27095939Ulnl9_mulna length 9, 16 week (mouse)465318237118857197Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
27095900Scvln9_msacral vertebrae length 2, 10 week (mouse)468018237107157197Mouse
27095917Scvln14_msacral vertebrae length 2, 16 week (mouse)468018237130277062Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
27095924Pglq2_mpelvic girdle length QTL 2, 5 week (mouse)469118237130727311Mouse
1302057Pgia27_mproteoglycan induced arthritis 27 (mouse)Not determined470067227104067464Mouse
12879897Berr4_mberghei resistance locus 4 (mouse)471982069105982216Mouse
1302044Nss1_mNOD Sjogren's syndrome 1 (mouse)Not determined471982069105982216Mouse
1301739Pitm2_mprion incubation time 2 (mouse)Not determined471982069105982216Mouse
1302031Bulb1_mbulb size 1 (mouse)Not determined474033887108034029Mouse
1301597Anxty_manxiety (mouse)Not determined474137574128009280Mouse
10412193Plep_mplasma lepin levels (mouse)Not determined474444699108444983Mouse
11532700Sluc43d_msusceptibility to lung cancer 43d (mouse)474444699108444983Mouse
11532701Sluc43e_msusceptibility to lung cancer 43e (mouse)474444699108444983Mouse
11532702Sluc43f_msusceptibility to lung cancer 43f (mouse)474444699108444983Mouse
11532703Sluc43g_msusceptibility to lung cancer 43g (mouse)474444699108444983Mouse
11532704Sluc43a_msusceptibility to lung cancer 43a (mouse)474444699108444983Mouse
11532705Sluc43b_msusceptibility to lung cancer 43b (mouse)474444699108444983Mouse
11532706Sluc43c_msusceptibility to lung cancer 43c (mouse)474444699108444983Mouse
11532707Sluc43h_msusceptibility to lung cancer 43h (mouse)474444699108444983Mouse
11532708Sluc43i_msusceptibility to lung cancer 43i (mouse)474444699108444983Mouse
26884431Zlq8_mzygomatic length QTL 8, 16 week (mouse)474718237108357197Mouse
1301545Gauc_mglucose area under curve (mouse)Not determined476763107110763305Mouse
1300697Sle2_msystemic lupus erythmatosus susceptibility 2 (mouse)Not determined477957579111957775Mouse
11039504Ltpr4a_mLeishmania tropica response 4a (mouse)479365751113365867Mouse
11039505Ltpr4c_mLeishmania tropica response 4c (mouse)479365751113365867Mouse
11039506Ltpr4b_mLeishmania tropica response 4b (mouse)479365751113365867Mouse
11039517Ltpr4_mLeishmania tropica response 4 (mouse)479365751113365867Mouse
12904933Edlmmq3_mextensor digitorum longus muscle mass QTL 3 (mouse)481213991115213991Mouse
1302204Spm1_msplenomegaly modifier (mouse)Not determined482244395116244582Mouse
27095921Pglq12_mpelvic girdle length QTL 12, 16 week (mouse)483118237108357197Mouse
1301867Idd11_minsulin dependent diabetes susceptibility 11 (mouse)Not determined483604870117605006Mouse
27226787Feml14_mfemur length 14, 10 week (mouse)484918237107157197Mouse
26884435Zlq4_mzygomatic length QTL 4, 10 week (mouse)485118237104957197Mouse
1357726Lnopy1_mlens opacity 1 (mouse)Not determined485428838119429037Mouse
1301556Cd4vts1_mCD4 virgin T cell subset 1 (mouse)Not determined485428838119429037Mouse
1301930Papg1_mpulmonary adenoma progression 1 (mouse)Not determined485781167119781279Mouse
1301118Bbaa23_mB.burgdorferi-associated arthritis 23 (mouse)Not determined485781167119781279Mouse
27226801Feml6_mfemur length 6, 5 week (mouse)487518237103257197Mouse
27226746Metcl8_mmetatarsal-calcaneal length 8, 10 week (mouse)487518237107157197Mouse
27226739Metcl14_mmetatarsal-calcaneal length 14, 16 week (mouse)487518237108357197Mouse
27095927Pglq7_mpelvic girdle length QTL 7, 10 week (mouse)488118237108357197Mouse
27226716Metcl2_mmetatarsal-calcaneal length 2, 5 week (mouse)488118237118557197Mouse
27226770Tibl11_mtibia length 11, 10 week (mouse)488518237108357197Mouse
27226766Tibl17_mtibia length 17, 16 week (mouse)488518237108457197Mouse
11532738Abd1_mautoimmune biliary disease 1 (mouse)488982069116271120Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined88982069140468203Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined88982069140468203Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)488982069140468203Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
13824982Svwq1_mseminal vesicle weight QTL 1 (mouse)489888237118857197Mouse
1300918Stheal4_msoft tissue heal 4 (mouse)Not determined489969627123969747Mouse
11553870Cmmm_mcarcinoma modifier of MSM (mouse)490590668124590781Mouse
15039368Nmrs19_mNAFLD-associated magnetic resonance shift 19 (mouse)490882780124882780Mouse
27226760Feml19_mfemur length 19, 16 week (mouse)490888237108457197Mouse
27226782Tibl2_mtibia length 2, 5 week (mouse)490888237111257197Mouse
13208562Wght7_mweight 7 (mouse)490888237148084457Mouse
12904002Opfaq9_mopen field activity QTL 9 (mouse)492975790126975790Mouse
1301731Cafq2_mcaffeine metabolism QTL 2 (mouse)Not determined494732255128732454Mouse
1301233Sbw2_msplenomegaly-NZB x NZW 2 (mouse)Not determined494957579128009280Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
14696687Gdq1_mgrooming duration QTL 1, males (mouse)496888237111857197Mouse
1300580Lbw2_mlupus NZB x NZW 2 (mouse)Not determined498545539128009280Mouse
1301106Skts7_mskin tumor susceptibility 7 (mouse)Not determined4100071971134072206Mouse
1301847Fecq2_mfecundity QTL 2 (mouse)Not determined4100071971134072206Mouse
14696689Gdq2_mgrooming duration QTL 2, females (mouse)4100857197124893793Mouse
12880433Fgf23lq1_mFGF23 serum level QTL 1 (mouse)4101157197135157197Mouse
1300689Dob1_mDietary obesity 1 (mouse)Body weight4101574601123127211Mouse

Markers in Region
D4Mit118  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384103,094,710 - 103,094,901UniSTSGRCm38
MGSCv374102,767,315 - 102,767,506UniSTSGRCm37
Celera4101,459,223 - 101,459,418UniSTS
Cytogenetic Map4C6UniSTS
cM Map449.6UniSTS
Whitehead Genetic448.1UniSTS
Whitehead_YAC4 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001425039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_146254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_189044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006503077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006503078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_376318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_376319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK030997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL844176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC028975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE629729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF742041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000036451   ⟹   ENSMUSP00000037588
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4102,895,262 - 102,971,496 (-)Ensembl
GRCm38.p6 Ensembl4103,038,065 - 103,114,299 (-)Ensembl
RefSeq Acc Id: ENSMUST00000036557   ⟹   ENSMUSP00000042272
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4102,895,262 - 102,971,496 (-)Ensembl
GRCm38.p6 Ensembl4103,038,065 - 103,114,299 (-)Ensembl
RefSeq Acc Id: ENSMUST00000106868   ⟹   ENSMUSP00000102481
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4102,895,266 - 102,971,752 (-)Ensembl
GRCm38.p6 Ensembl4103,038,069 - 103,114,555 (-)Ensembl
RefSeq Acc Id: ENSMUST00000116316   ⟹   ENSMUSP00000112018
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4102,895,266 - 102,971,421 (-)Ensembl
GRCm38.p6 Ensembl4103,038,069 - 103,114,224 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136355
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4102,895,298 - 102,932,816 (-)Ensembl
GRCm38.p6 Ensembl4103,038,101 - 103,075,619 (-)Ensembl
RefSeq Acc Id: ENSMUST00000138960
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4102,895,262 - 102,930,199 (-)Ensembl
GRCm38.p6 Ensembl4103,038,065 - 103,073,002 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148673   ⟹   ENSMUSP00000119752
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4102,939,134 - 102,944,553 (-)Ensembl
GRCm38.p6 Ensembl4103,081,937 - 103,087,356 (-)Ensembl
RefSeq Acc Id: ENSMUST00000152647
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4102,896,469 - 102,898,814 (-)Ensembl
GRCm38.p6 Ensembl4103,039,272 - 103,041,617 (-)Ensembl
RefSeq Acc Id: NM_001425039   ⟹   NP_001411968
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394102,891,954 - 102,971,524 (-)NCBI
RefSeq Acc Id: NM_146254   ⟹   NP_666366
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394102,891,954 - 102,971,524 (-)NCBI
GRCm384103,038,065 - 103,114,299 (-)NCBI
MGSCv374102,710,670 - 102,786,904 (-)RGD
Celera4101,402,744 - 101,478,812 (-)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_189044
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394102,891,954 - 102,971,524 (-)NCBI
RefSeq Acc Id: XM_006503077   ⟹   XP_006503140
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394102,919,502 - 102,971,521 (-)NCBI
GRCm384103,062,305 - 103,114,282 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006503078   ⟹   XP_006503141
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394102,919,496 - 102,971,521 (-)NCBI
GRCm384103,062,299 - 103,114,282 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017320218   ⟹   XP_017175707
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394102,917,143 - 102,971,521 (-)NCBI
GRCm384103,059,946 - 103,114,282 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253559   ⟹   XP_030109419
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394102,899,839 - 102,971,521 (-)NCBI
GRCm384103,042,642 - 103,114,282 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253560   ⟹   XP_030109420
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394102,899,839 - 102,971,521 (-)NCBI
GRCm384103,042,642 - 103,114,282 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253561   ⟹   XP_030109421
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394102,899,839 - 102,971,390 (-)NCBI
GRCm384103,042,642 - 103,114,193 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253562   ⟹   XP_030109422
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394102,899,839 - 102,952,609 (-)NCBI
GRCm384103,042,642 - 103,095,400 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036164129   ⟹   XP_036020022
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394102,895,262 - 102,971,521 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941895
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394102,895,262 - 102,971,521 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941896
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394102,895,262 - 102,971,521 (-)NCBI
Sequence:
RefSeq Acc Id: XR_376318
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394102,895,262 - 102,971,521 (-)NCBI
GRCm384103,038,069 - 103,114,282 (-)NCBI
Sequence:
RefSeq Acc Id: XR_376319
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394102,895,262 - 102,971,521 (-)NCBI
GRCm384103,038,069 - 103,114,282 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_666366   ⟸   NM_146254
- Peptide Label: isoform 1
- UniProtKB: Q8K042 (UniProtKB/Swiss-Prot),   Q8C0I9 (UniProtKB/Swiss-Prot),   Q8K111 (UniProtKB/Swiss-Prot),   E9PYY5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006503141   ⟸   XM_006503078
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006503140   ⟸   XM_006503077
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017175707   ⟸   XM_017320218
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_030109420   ⟸   XM_030253560
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030109419   ⟸   XM_030253559
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030109421   ⟸   XM_030253561
- Peptide Label: isoform X4
RefSeq Acc Id: XP_030109422   ⟸   XM_030253562
- Peptide Label: isoform X5
RefSeq Acc Id: ENSMUSP00000102481   ⟸   ENSMUST00000106868
RefSeq Acc Id: ENSMUSP00000042272   ⟸   ENSMUST00000036557
RefSeq Acc Id: ENSMUSP00000119752   ⟸   ENSMUST00000148673
RefSeq Acc Id: ENSMUSP00000037588   ⟸   ENSMUST00000036451
RefSeq Acc Id: ENSMUSP00000112018   ⟸   ENSMUST00000116316
RefSeq Acc Id: XP_036020022   ⟸   XM_036164129
- Peptide Label: isoform X1
RefSeq Acc Id: NP_001411968   ⟸   NM_001425039
- Peptide Label: isoform 2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9PYY5-F1-model_v2 AlphaFold E9PYY5 1-807 view protein structure

Promoters
RGD ID:6835178
Promoter ID:MM_KWN:38716
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   Lung,   MEF_B4,   Spleen
Transcripts:AK078168_E030030F06RIK,   ENSMUST00000036557,   ENSMUST00000081526,   NM_146254,   OTTMUST00000018305,   UC008TXC.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364102,786,779 - 102,787,279 (-)MPROMDB
RGD ID:6884008
Promoter ID:EPDNEW_M5454
Type:initiation region
Name:Wdr78_1
Description:Mus musculus WD repeat domain 78 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384103,114,327 - 103,114,387EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2385328 AgrOrtholog
Ensembl Genes ENSMUSG00000035126 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000036451.15 UniProtKB/Swiss-Prot
  ENSMUST00000036557.15 UniProtKB/Swiss-Prot
  ENSMUST00000106868 ENTREZGENE
  ENSMUST00000106868.4 UniProtKB/Swiss-Prot
  ENSMUST00000116316 ENTREZGENE
  ENSMUST00000116316.10 UniProtKB/Swiss-Prot
  ENSMUST00000148673.2 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot
InterPro WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot
  WD40_repeat UniProtKB/Swiss-Prot
  WD40_repeat_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:242584 UniProtKB/Swiss-Prot
MGD MGI:2385328 ENTREZGENE
NCBI Gene 242584 ENTREZGENE
PANTHER DYNEIN AXONEMAL INTERMEDIATE CHAIN 4 UniProtKB/Swiss-Prot
  DYNEIN INTERMEDIATE CHAIN UniProtKB/Swiss-Prot
Pfam WD40 UniProtKB/Swiss-Prot
PhenoGen Dnai4 PhenoGen
PROSITE WD_REPEATS_2 UniProtKB/Swiss-Prot
  WD_REPEATS_REGION UniProtKB/Swiss-Prot
SMART WD40 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50978 UniProtKB/Swiss-Prot
UniProt E9PYY5 ENTREZGENE
  F6QPI2_MOUSE UniProtKB/TrEMBL
  Q8C0I9 ENTREZGENE
  Q8K042 ENTREZGENE
  Q8K111 ENTREZGENE
  WDR78_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q8C0I9 UniProtKB/Swiss-Prot
  Q8K042 UniProtKB/Swiss-Prot
  Q8K111 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-10-19 Dnai4  dynein axonemal intermediate chain 4  Wdr78  WD repeat domain 78  Symbol and/or name updated 27372883 PROVISIONAL