DNAI4 (dynein axonemal intermediate chain 4) - Rat Genome Database

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Gene: DNAI4 (dynein axonemal intermediate chain 4) Pan paniscus
Analyze
Symbol: DNAI4
Name: dynein axonemal intermediate chain 4
RGD ID: 11835233
Description: ENCODES a protein that exhibits dynein heavy chain binding (inferred); dynein light chain binding (inferred); INVOLVED IN hematopoietic progenitor cell differentiation (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN axonemal dynein complex (inferred); axoneme (inferred); motile cilium (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: WD repeat domain 78; WDR78
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21159,935,133 - 160,047,820 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11159,095,149 - 159,208,006 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0166,061,390 - 66,174,221 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1167,946,717 - 68,059,640 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl167,953,276 - 68,059,625 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
DNAI4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21159,935,133 - 160,047,820 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11159,095,149 - 159,208,006 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0166,061,390 - 66,174,221 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1167,946,717 - 68,059,640 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl167,953,276 - 68,059,625 (-)Ensemblpanpan1.1panPan2
DNAI4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38166,812,885 - 66,924,856 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl166,812,885 - 66,924,856 (-)EnsemblGRCh38hg38GRCh38
GRCh37167,278,568 - 67,390,539 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36167,051,156 - 67,163,158 (-)NCBINCBI36Build 36hg18NCBI36
Celera165,568,539 - 65,680,519 (-)NCBICelera
Cytogenetic Map1p31.3NCBI
HuRef165,386,832 - 65,499,349 (-)NCBIHuRef
CHM1_1167,393,937 - 67,505,926 (-)NCBICHM1_1
T2T-CHM13v2.0166,690,412 - 66,802,384 (-)NCBIT2T-CHM13v2.0
Dnai4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394102,891,954 - 102,971,524 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4102,895,262 - 102,971,752 (-)EnsemblGRCm39 Ensembl
GRCm384103,038,065 - 103,114,299 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4103,038,065 - 103,114,555 (-)EnsemblGRCm38mm10GRCm38
MGSCv374102,710,670 - 102,786,904 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364102,536,001 - 102,612,156 (-)NCBIMGSCv36mm8
Celera4101,402,744 - 101,478,812 (-)NCBICelera
Cytogenetic Map4C6NCBI
cM Map447.28NCBI
Dnai4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85123,016,480 - 123,105,283 (-)NCBIGRCr8
mRatBN7.25117,787,398 - 117,876,216 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5117,788,464 - 117,876,127 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5120,420,400 - 120,508,962 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05122,145,751 - 122,234,315 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05122,197,015 - 122,285,581 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05122,551,370 - 122,642,161 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5122,551,405 - 122,642,202 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05126,478,242 - 126,507,661 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.05126,419,821 - 126,471,244 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45123,959,144 - 124,048,268 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15123,964,370 - 124,053,494 (-)NCBI
Celera5116,363,303 - 116,447,865 (-)NCBICelera
Cytogenetic Map5q33NCBI
Dnai4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542324,027,924 - 24,089,914 (+)NCBIChiLan1.0ChiLan1.0
DNAI4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1543,590,200 - 43,690,293 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl543,590,239 - 43,689,339 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha543,713,901 - 43,814,576 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0543,775,487 - 43,876,196 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl543,775,828 - 43,876,050 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1543,741,398 - 43,841,871 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0543,687,497 - 43,787,955 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0543,927,523 - 44,028,271 (+)NCBIUU_Cfam_GSD_1.0
Dnai4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505879,739,535 - 79,846,629 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365914,642,762 - 4,750,006 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNAI4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6145,680,052 - 145,768,488 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16145,680,135 - 145,754,809 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
DNAI4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12066,189,698 - 66,295,628 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2066,189,723 - 66,294,478 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603351,300,092 - 51,405,974 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dnai4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474228,100,838 - 28,181,385 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003806952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000038425   ⟹   ENSPPAP00000015734
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl167,953,276 - 68,059,625 (-)Ensembl
RefSeq Acc Id: XM_003806952   ⟹   XP_003807000
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21159,935,133 - 160,047,820 (+)NCBI
NHGRI_mPanPan11159,095,149 - 159,208,006 (+)NCBI
Mhudiblu_PPA_v0166,061,390 - 66,174,221 (-)NCBI
PanPan1.1167,946,717 - 68,059,640 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003807000 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000015734.1
Reference Protein Sequences
RefSeq Acc Id: XP_003807000   ⟸   XM_003806952
- Sequence:
RefSeq Acc Id: ENSPPAP00000015734   ⟸   ENSPPAT00000038425


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000030982 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000038425.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene WDR78 ENTREZGENE
PANTHER DYNEIN AXONEMAL INTERMEDIATE CHAIN 4 UniProtKB/TrEMBL
  DYNEIN INTERMEDIATE CHAIN UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PROSITE WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A2R9AJD3_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-05-12 DNAI4  dynein axonemal intermediate chain 4  WDR78  WD repeat domain 78  Symbol and/or name change 5135510 APPROVED