Rnf41 (ring finger protein 41) - Rat Genome Database

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Gene: Rnf41 (ring finger protein 41) Mus musculus
Analyze
Symbol: Rnf41
Name: ring finger protein 41
RGD ID: 1551303
MGI Page MGI
Description: Enables erythropoietin receptor binding activity and interleukin-3 receptor binding activity. Acts upstream of or within several processes, including negative regulation of mitophagy; protein polyubiquitination; and regulation of hemopoiesis. Predicted to be located in perinuclear region of cytoplasm. Predicted to be active in endoplasmic reticulum tubular network. Is expressed in several structures, including central nervous system; dorsal root ganglion; male reproductive system; and urinary system. Human ortholog(s) of this gene implicated in congenital heart disease. Orthologous to human RNF41 (ring finger protein 41).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2210404G21Rik; 4930511A05Rik; 4933415P08Rik; D10Ertd722; D10Ertd722e; E3 ubiquitin-protein ligase NRDP1; FL; FLRF; Nr; Nrdp1; RING-type E3 ubiquitin transferase NRDP1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm4772   Gm8761  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910128,247,485 - 128,277,310 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10128,247,526 - 128,277,310 (+)EnsemblGRCm39 Ensembl
GRCm3810128,411,616 - 128,441,441 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10128,411,657 - 128,441,441 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710127,848,672 - 127,878,497 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610127,814,606 - 127,844,389 (+)NCBIMGSCv36mm8
Celera10130,799,930 - 130,830,133 (+)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1076.55NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Cardiac-specific overexpression of E3 ligase Nrdp1 increases ischemia and reperfusion-induced cardiac injury. Zhang Y, etal., Basic Res Cardiol. 2011 May;106(3):371-83. doi: 10.1007/s00395-011-0157-0. Epub 2011 Feb 11.
10. Association between RNF41 gene c.-206 T > A genetic polymorphism and risk of congenital heart diseases in the Chinese Mongolian population. Zhang Y, etal., Genet Mol Res. 2016 Jun 17;15(2). doi: 10.4238/gmr.15028089.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11358394   PMID:11795391   PMID:12411582   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15314180  
PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:17145873   PMID:18287559   PMID:18495327   PMID:18799693   PMID:18973680   PMID:18986647   PMID:19483718   PMID:19527720  
PMID:20628057   PMID:21738612   PMID:21873635   PMID:22988430   PMID:24949970   PMID:26085571   PMID:26390156   PMID:28481871   PMID:31138677   PMID:33264090   PMID:34023381   PMID:36822331  
PMID:37437019   PMID:37759433   PMID:38583443  


Genomics

Comparative Map Data
Rnf41
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910128,247,485 - 128,277,310 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10128,247,526 - 128,277,310 (+)EnsemblGRCm39 Ensembl
GRCm3810128,411,616 - 128,441,441 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10128,411,657 - 128,441,441 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710127,848,672 - 127,878,497 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610127,814,606 - 127,844,389 (+)NCBIMGSCv36mm8
Celera10130,799,930 - 130,830,133 (+)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1076.55NCBI
RNF41
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381256,202,179 - 56,221,969 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1256,202,179 - 56,221,933 (-)EnsemblGRCh38hg38GRCh38
GRCh371256,595,963 - 56,615,753 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361254,884,552 - 54,902,002 (-)NCBINCBI36Build 36hg18NCBI36
Celera1256,250,761 - 56,268,658 (-)NCBICelera
Cytogenetic Map12q13.3NCBI
HuRef1253,635,511 - 53,654,742 (-)NCBIHuRef
CHM1_11256,563,663 - 56,583,136 (-)NCBICHM1_1
T2T-CHM13v2.01256,169,789 - 56,189,589 (-)NCBIT2T-CHM13v2.0
Rnf41
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr871,422,651 - 1,461,700 (+)NCBIGRCr8
mRatBN7.27838,160 - 876,869 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7838,203 - 865,511 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx73,600,148 - 3,625,470 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.075,476,129 - 5,501,454 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.075,773,774 - 5,799,206 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.072,827,242 - 2,854,230 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl72,827,247 - 2,852,681 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.072,805,710 - 2,846,908 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.471,704,204 - 1,725,892 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.171,704,203 - 1,725,892 (+)NCBI
Celera7715,443 - 737,104 (+)NCBICelera
Cytogenetic Map7q11NCBI
Rnf41
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554583,799,450 - 3,833,263 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554583,799,450 - 3,833,269 (-)NCBIChiLan1.0ChiLan1.0
RNF41
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21038,110,057 - 38,127,573 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11238,106,825 - 38,127,001 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01232,693,349 - 32,710,866 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11232,944,791 - 32,962,584 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1232,944,814 - 32,962,584 (+)Ensemblpanpan1.1panPan2
RNF41
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.110512,650 - 521,293 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl10514,635 - 542,395 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha10575,411 - 608,404 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.010520,593 - 553,626 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl10522,281 - 553,589 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.110498,024 - 531,095 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.010741,090 - 774,071 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.010865,156 - 898,129 (-)NCBIUU_Cfam_GSD_1.0
Rnf41
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494558,239,591 - 58,266,609 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936646605,302 - 631,022 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936646605,302 - 630,645 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF41
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl521,596,306 - 21,624,569 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1521,595,703 - 21,624,589 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2523,043,346 - 23,071,863 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RNF41
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11152,151,968 - 52,175,760 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1152,141,715 - 52,175,728 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037193,810,784 - 193,840,955 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf41
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480211,781,725 - 11,810,402 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480211,781,748 - 11,811,412 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rnf41
1011 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1949
Count of miRNA genes:630
Interacting mature miRNAs:786
Transcripts:ENSMUST00000096386, ENSMUST00000171342
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
1357544Vtbt10_mvertebral trabecular bone trait 10 (mouse)Not determined1097217101130530862Mouse
4142461Bmd25_mbone mineral density 25 (mouse)Not determined1097217101130530862Mouse
11533919Mvb4_mmodifier of vibrator 4 (mouse)397217101130530862Mouse
11533921Mvb2_mmodifier of vibrator 2 (mouse)1097217101130530862Mouse
12880413V125Dq9_mvitamin D active form serum level QTL 9 (mouse)1097535905130530862Mouse
4141402T2dm1sa_mtype 2 diabetes mellitus 1 in SMXA RI mice (mouse)Not determined97758644130530862Mouse
11040593Lmr5e_mleishmaniasis resistance 5e (mouse)1099220635130530862Mouse
11040595Lmr5c_mleishmaniasis resistance 5c (mouse)1099220635130530862Mouse
11040597Lmr5a_mleishmaniasis resistance 5a (mouse)1099220635130530862Mouse
1357744Cfbw4_mcystic fibrosis body weight 4 (mouse)Not determined10100986516130530862Mouse
1301968Estq4_mestradiol regulated response QTL 4 (mouse)Not determined10100986516130530862Mouse
1301901Im5_mimmunoregulatory 5 (mouse)Not determined10101497164130530862Mouse
4141361Cfmq3_mcystic fibrosis modifier QTL 3 (mouse)Not determined10101497164130530862Mouse
1300678Leg2_mlongevity extending gene 2 (mouse)Not determined10102506908130530862Mouse
1301895Exq1_mexploratory and excitability QTL 1 (mouse)Not determined10102847852130530862Mouse
14696727Kidrq2_mkidney weight, right QTL 2 (mouse)10102902508130530862Mouse
4141007Obrq10_mobesity resistance QTL 10 (mouse)Not determined103243727130530862Mouse
4141487Tgq21_mtriglyceride QTL 21 (mouse)Not determined104110021130530862Mouse
14746996Manh69_mmandible shape 69 (mouse)10104763638130530862Mouse
1302200Sle12_msystematic lupus erythematosus susceptibility 12 (mouse)Not determined10105041304130530862Mouse
1357482Nhdlq4_mnon-HDL QTL 4 (mouse)Not determined10105041304130530862Mouse
1300679Nociq2_mnociceptive sensitivity inflammatory QTL 2 (mouse)Not determined10105041304130530862Mouse
11040594Lmr5f_mleishmaniasis resistance 5f (mouse)10105179713130530862Mouse
11040596Lmr5d_mleishmaniasis resistance 5d (mouse)10105179713130530862Mouse
11040598Lmr5b_mleishmaniasis resistance 5b (mouse)10105179713130530862Mouse
4142089Obrq9_mobesity resistance QTL 9 (mouse)Not determined108515907130530862Mouse
4141153Ltgq2_mliver triglyceride QTL 2 (mouse)Not determined108515907130530862Mouse
11041664Lmr25_mleishmaniasis resistance 25 (mouse)10108575094130530862Mouse
11039496Ltpr5b_mLeishmania tropica response 5b (mouse)10108575094130530862Mouse
11049570Lmr25b_mleishmaniasis resistance 25b (mouse)10108575094130530862Mouse
11049563Lmr25a_mleishmaniasis resistance 25a (mouse)10108575094130530862Mouse
12911218Frct3a_mfear conditioning traits 3a (mouse)10122785970129466996Mouse
12911220Frct3c_mfear conditioning traits 3c (mouse)10122785970129466996Mouse
12879490Frct3_mfear conditioning traits 3 (mouse)10122785970129466996Mouse
12904001Opfaq10_mopen field activity QTL 10 (mouse)10125633671129466375Mouse
12911219Frct3b_mfear conditioning traits 3b (mouse)10127675574129466996Mouse
12911221Frct3d_mfear conditioning traits 3d (mouse)10127675574129466996Mouse
12904000Opfaq7_mopen field activity QTL 7 (mouse)10127746318129466375Mouse

Markers in Region
RH136255  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810128,441,057 - 128,441,257UniSTSGRCm38
MGSCv3710127,878,113 - 127,878,313UniSTSGRCm37
Celera10130,829,749 - 130,829,949UniSTS
Cytogenetic Map10D3UniSTS
cM Map1072.0UniSTS
D10Ertd722e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810128,441,094 - 128,441,320UniSTSGRCm38
MGSCv3710127,878,150 - 127,878,376UniSTSGRCm37
Celera10130,829,786 - 130,830,012UniSTS
Cytogenetic Map10D3UniSTS
cM Map1072.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001164237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_104288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_104289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_104290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC090489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC122159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF305730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK015745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK016825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC019415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC049078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000096386   ⟹   ENSMUSP00000100869
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10128,247,615 - 128,276,207 (+)Ensembl
GRCm38.p6 Ensembl10128,411,746 - 128,440,338 (+)Ensembl
RefSeq Acc Id: ENSMUST00000171342   ⟹   ENSMUSP00000132751
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10128,247,526 - 128,277,310 (+)Ensembl
GRCm38.p6 Ensembl10128,411,657 - 128,441,441 (+)Ensembl
RefSeq Acc Id: ENSMUST00000217826   ⟹   ENSMUSP00000151260
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10128,247,582 - 128,275,286 (+)Ensembl
GRCm38.p6 Ensembl10128,411,713 - 128,439,417 (+)Ensembl
RefSeq Acc Id: ENSMUST00000218371   ⟹   ENSMUSP00000151889
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10128,251,047 - 128,275,295 (+)Ensembl
GRCm38.p6 Ensembl10128,415,178 - 128,439,426 (+)Ensembl
RefSeq Acc Id: NM_001164237   ⟹   NP_001157709
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910128,247,485 - 128,277,310 (+)NCBI
GRCm3810128,411,616 - 128,441,441 (+)ENTREZGENE
MGSCv3710127,848,672 - 127,878,497 (+)RGD
Celera10130,799,930 - 130,830,133 (+)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_026259   ⟹   NP_080535
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910128,247,485 - 128,277,310 (+)NCBI
GRCm3810128,411,616 - 128,441,441 (+)ENTREZGENE
MGSCv3710127,848,672 - 127,878,497 (+)RGD
Celera10130,799,930 - 130,830,133 (+)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_104288
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910128,247,485 - 128,277,310 (+)NCBI
GRCm3810128,411,616 - 128,441,441 (+)NCBI
Celera10130,799,930 - 130,830,133 (+)NCBI
Sequence:
RefSeq Acc Id: NR_104289
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910128,247,485 - 128,277,310 (+)NCBI
GRCm3810128,411,616 - 128,441,441 (+)NCBI
Celera10130,799,930 - 130,830,133 (+)NCBI
Sequence:
RefSeq Acc Id: NR_104290
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910128,247,485 - 128,277,310 (+)NCBI
GRCm3810128,411,616 - 128,441,441 (+)NCBI
Celera10130,799,930 - 130,830,133 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_080535   ⟸   NM_026259
- UniProtKB: Q9CRK6 (UniProtKB/Swiss-Prot),   Q8VEA2 (UniProtKB/Swiss-Prot),   Q8BMC9 (UniProtKB/Swiss-Prot),   Q8BGJ2 (UniProtKB/Swiss-Prot),   Q9D568 (UniProtKB/Swiss-Prot),   Q8BH75 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001157709   ⟸   NM_001164237
- UniProtKB: Q9CRK6 (UniProtKB/Swiss-Prot),   Q8VEA2 (UniProtKB/Swiss-Prot),   Q8BMC9 (UniProtKB/Swiss-Prot),   Q8BGJ2 (UniProtKB/Swiss-Prot),   Q9D568 (UniProtKB/Swiss-Prot),   Q8BH75 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000151889   ⟸   ENSMUST00000218371
RefSeq Acc Id: ENSMUSP00000151260   ⟸   ENSMUST00000217826
RefSeq Acc Id: ENSMUSP00000132751   ⟸   ENSMUST00000171342
RefSeq Acc Id: ENSMUSP00000100869   ⟸   ENSMUST00000096386
Protein Domains
RING-type   SIAH-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BH75-F1-model_v2 AlphaFold Q8BH75 1-317 view protein structure

Promoters
RGD ID:6819814
Promoter ID:MM_KWN:5994
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001164237,   NM_026259,   UC007HMR.1,   UC007HMT.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3610127,847,706 - 127,848,832 (+)MPROMDB
RGD ID:8673614
Promoter ID:EPDNEW_M14838
Type:initiation region
Name:Rnf41_1
Description:Mus musculus ring finger protein 41 , transcript variant 4, non-codingRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14839  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3810128,411,701 - 128,411,761EPDNEW
RGD ID:8673618
Promoter ID:EPDNEW_M14839
Type:multiple initiation site
Name:Rnf41_2
Description:Mus musculus ring finger protein 41 , transcript variant 4, non-codingRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14838  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3810128,415,186 - 128,415,246EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914838 AgrOrtholog
Ensembl Genes ENSMUSG00000025373 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000096386 ENTREZGENE
  ENSMUST00000096386.13 UniProtKB/Swiss-Prot
  ENSMUST00000171342 ENTREZGENE
  ENSMUST00000171342.3 UniProtKB/Swiss-Prot
  ENSMUST00000217826.2 UniProtKB/Swiss-Prot
  ENSMUST00000218371.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro NRDP1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NRDP1_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_SIAH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:67588 UniProtKB/Swiss-Prot
MGD MGI:1914838 ENTREZGENE
NCBI Gene 67588 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE NRDP1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RING FINGER PROTEIN 41, 151 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam USP8_interact UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C3HC4_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rnf41 PhenoGen
PROSITE ZF_RING_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_SIAH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF160088 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRAF domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1W2P811_MOUSE UniProtKB/TrEMBL
  Q8BGJ2 ENTREZGENE
  Q8BH75 ENTREZGENE
  Q8BMC9 ENTREZGENE
  Q8VEA2 ENTREZGENE
  Q99MS2_MOUSE UniProtKB/TrEMBL
  Q9CRK6 ENTREZGENE
  Q9D568 ENTREZGENE
  RNF41_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q8BGJ2 UniProtKB/Swiss-Prot
  Q8BMC9 UniProtKB/Swiss-Prot
  Q8VEA2 UniProtKB/Swiss-Prot
  Q9CRK6 UniProtKB/Swiss-Prot
  Q9D568 UniProtKB/Swiss-Prot