Rnf41 (ring finger protein 41) - Rat Genome Database

Name: Rnf41
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Rnf41 (ring finger protein 41) Rattus norvegicus

Analyze

Symbol:

Rnf41

Name:

ring finger protein 41

RGD ID:

1309557

Description:

Predicted to enable several functions, including identical protein binding activity; signaling receptor binding activity; and small GTPase binding activity. Predicted to be involved in several processes, including extrinsic apoptotic signaling pathway; positive regulation of reactive oxygen species metabolic process; and protein autoubiquitination. Predicted to act upstream of or within several processes, including negative regulation of mitophagy; regulation of hemopoiesis; and regulation of intracellular signal transduction. Predicted to be located in perinuclear region of cytoplasm. Predicted to be active in endoplasmic reticulum tubular network. Human ortholog(s) of this gene implicated in congenital heart disease. Orthologous to human RNF41 (ring finger protein 41); PARTICIPATES IN endocytosis pathway; INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 6-propyl-2-thiouracil; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

E3 ubiquitin-protein ligase NRDP1; LOC362814

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RNF41 (ring finger protein 41)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, Panther, Treefam
Mus musculus (house mouse):	Rnf41 (ring finger protein 41)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rnf41 (ring finger protein 41)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RNF41 (ring finger protein 41)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RNF41 (ring finger protein 41)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rnf41 (ring finger protein 41)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RNF41 (ring finger protein 41)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RNF41 (ring finger protein 41)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rnf41 (ring finger protein 41)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	RNF41 (ring finger protein 41)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rnf41 (ring finger protein 41)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rnf41 (ring finger protein 41)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	elgi	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rnf41	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	1,422,651 - 1,461,700 (+)	NCBI		GRCr8
mRatBN7.2	7	838,160 - 876,869 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	838,203 - 865,511 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	3,600,148 - 3,625,470 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	5,476,129 - 5,501,454 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	5,773,774 - 5,799,206 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	2,827,242 - 2,854,230 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	2,827,247 - 2,852,681 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	2,805,710 - 2,846,908 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	1,704,204 - 1,725,892 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	1,704,203 - 1,725,892 (+)	NCBI
Celera	7	715,443 - 737,104 (+)	NCBI		Celera
Cytogenetic Map	7	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

congenital heart disease (ISO)

genetic disease (ISO)

Myocardial Reperfusion Injury (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

bisphenol A (EXP)

cadmium dichloride (EXP)

chlorpyrifos (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

cyclosporin A (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

ethanol (ISO)

flutamide (EXP)

folic acid (ISO)

indole-3-methanol (EXP)

ketoconazole (EXP)

methimazole (EXP)

methylmercury chloride (ISO)

paracetamol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

Soman (EXP)

sunitinib (ISO)

trimellitic anhydride (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

extrinsic apoptotic signaling pathway (ISO)

negative regulation of cell migration (ISO)

negative regulation of cell population proliferation (ISO)

negative regulation of mitophagy (ISO)

positive regulation of protein catabolic process (ISO)

positive regulation of reactive oxygen species metabolic process (ISO)

proteasomal protein catabolic process (ISO)

protein autoubiquitination (ISO)

protein polyubiquitination (ISO)

protein ubiquitination (IBA,ISO)

regulation of establishment of cell polarity (ISO)

regulation of gene expression (ISO)

regulation of lymphocyte differentiation (ISO)

regulation of MAPK cascade (ISO)

regulation of myeloid cell differentiation (ISO)

regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ISO)

regulation of reactive oxygen species metabolic process (ISO)

Cellular Component

endoplasmic reticulum tubular network (IBA,ISO)

perinuclear region of cytoplasm (ISO)

Molecular Function

erythropoietin receptor binding (ISO)

identical protein binding (ISO)

interleukin-3 receptor binding (ISO)

metal ion binding (IEA)

protein binding (ISO)

protein domain specific binding (ISO)

receptor tyrosine kinase binding (ISO)

small GTPase binding (ISO)

ubiquitin protein ligase activity (IBA,ISO)

ubiquitin-protein transferase activity (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

endocytosis pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Cardiac-specific overexpression of E3 ligase Nrdp1 increases ischemia and reperfusion-induced cardiac injury.	Zhang Y, etal., Basic Res Cardiol. 2011 May;106(3):371-83. doi: 10.1007/s00395-011-0157-0. Epub 2011 Feb 11.
5.	Association between RNF41 gene c.-206 T > A genetic polymorphism and risk of congenital heart diseases in the Chinese Mongolian population.	Zhang Y, etal., Genet Mol Res. 2016 Jun 17;15(2). doi: 10.4238/gmr.15028089.

Additional References at PubMed

PMID:12477932	PMID:14765125	PMID:17145873	PMID:18495327	PMID:18541373	PMID:22493164	PMID:24056301	PMID:24105792	PMID:24949970	PMID:25416956	PMID:25896295	PMID:27353365
PMID:27428330	PMID:30720051	PMID:31515488	PMID:32200526

Genomics

Comparative Map Data

Rnf41
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	1,422,651 - 1,461,700 (+)	NCBI		GRCr8
mRatBN7.2	7	838,160 - 876,869 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	838,203 - 865,511 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	3,600,148 - 3,625,470 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	5,476,129 - 5,501,454 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	5,773,774 - 5,799,206 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	2,827,242 - 2,854,230 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	2,827,247 - 2,852,681 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	2,805,710 - 2,846,908 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	1,704,204 - 1,725,892 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	1,704,203 - 1,725,892 (+)	NCBI
Celera	7	715,443 - 737,104 (+)	NCBI		Celera
Cytogenetic Map	7	q11	NCBI

RNF41
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	56,202,179 - 56,221,969 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	56,202,179 - 56,221,933 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	56,595,963 - 56,615,753 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	54,884,552 - 54,902,002 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	12	56,250,761 - 56,268,658 (-)	NCBI		Celera
Cytogenetic Map	12	q13.3	NCBI
HuRef	12	53,635,511 - 53,654,742 (-)	NCBI		HuRef
CHM1_1	12	56,563,663 - 56,583,136 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	56,169,789 - 56,189,589 (-)	NCBI		T2T-CHM13v2.0

Rnf41
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	128,247,485 - 128,277,310 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	128,247,526 - 128,277,310 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	128,411,616 - 128,441,441 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	128,411,657 - 128,441,441 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	127,848,672 - 127,878,497 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	127,814,606 - 127,844,389 (+)	NCBI		MGSCv36	mm8
Celera	10	130,799,930 - 130,830,133 (+)	NCBI		Celera
Cytogenetic Map	10	D3	NCBI
cM Map	10	76.55	NCBI

Rnf41
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955458	3,799,450 - 3,833,263 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955458	3,799,450 - 3,833,269 (-)	NCBI	ChiLan1.0	ChiLan1.0

RNF41
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	38,110,057 - 38,127,573 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	38,106,825 - 38,127,001 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	32,693,349 - 32,710,866 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	32,944,791 - 32,962,584 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	32,944,814 - 32,962,584 (+)	Ensembl	panpan1.1		panPan2

RNF41
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	512,650 - 521,293 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	514,635 - 542,395 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	575,411 - 608,404 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	520,593 - 553,626 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	522,281 - 553,589 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	498,024 - 531,095 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	741,090 - 774,071 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	865,156 - 898,129 (-)	NCBI		UU_Cfam_GSD_1.0

Rnf41
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	58,239,591 - 58,266,609 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936646	605,302 - 631,022 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936646	605,302 - 630,645 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RNF41
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	21,596,306 - 21,624,569 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	21,595,703 - 21,624,589 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	23,043,346 - 23,071,863 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RNF41
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	52,151,968 - 52,175,760 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	52,141,715 - 52,175,728 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	193,810,784 - 193,840,955 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rnf41
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624802	11,781,725 - 11,810,402 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624802	11,781,748 - 11,811,412 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Rnf41
243 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	132
Count of miRNA genes:	94
Interacting mature miRNAs:	112
Transcripts:	ENSRNOT00000029778
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2298550	Neuinf6	Neuroinflammation QTL 6	3.3		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	7	1	27829089	Rat
7411566	Bw136	Body weight QTL 136	10.4	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	1	31962314	Rat
9590142	Scort5	Serum corticosterone level QTL 5	24.4	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	1	31962314	Rat
724560	Plsm3	Polydactyly-luxate syndrome (PLS) morphotypes QTL 3		0.0003	tibia length (VT:0004357)	tibia length (CMO:0000450)	7	1	34000259	Rat
2317047	Wbc4	White blood cell count QTL 4		0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	7	1	35342956	Rat
61410	Bw19	Body weight QTL 19	6.2	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	44782185	Rat
631503	Bp102	Blood pressure QTL 102	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	1	44822433	Rat
1300176	Hrtrt10	Heart rate QTL 10	3.19		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	664270	26029351	Rat

Markers in Region

RH129450

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	848,222 - 848,392 (+)	MAPPER	mRatBN7.2
mRatBN7.2	8	121,339,344 - 121,339,526 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	130,313,189 - 130,313,370	NCBI	Rnor6.0
Rnor_6.0	7	2,837,279 - 2,837,448	NCBI	Rnor6.0
Rnor_5.0	7	2,815,743 - 2,815,912	UniSTS	Rnor5.0
Rnor_5.0	8	129,496,624 - 129,496,805	UniSTS	Rnor5.0
RGSC_v3.4	7	1,710,492 - 1,710,661	UniSTS	RGSC3.4
Celera	7	721,718 - 721,887	UniSTS
Celera	8	120,474,237 - 120,474,418	UniSTS
Cytogenetic Map	7	q11	UniSTS

AV071699

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	121,339,425 - 121,339,514 (+)	MAPPER	mRatBN7.2
mRatBN7.2	7	848,291 - 848,380 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	2,837,348 - 2,837,436	NCBI	Rnor6.0
Rnor_6.0	8	130,313,270 - 130,313,358	NCBI	Rnor6.0
Rnor_5.0	7	2,815,812 - 2,815,900	UniSTS	Rnor5.0
Rnor_5.0	8	129,496,705 - 129,496,793	UniSTS	Rnor5.0
RGSC_v3.4	7	1,710,561 - 1,710,649	UniSTS	RGSC3.4
Celera	7	721,787 - 721,875	UniSTS
Celera	8	120,474,318 - 120,474,406	UniSTS
Cytogenetic Map	7	q11	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	30	14	19	14	2	2	74	35	41	11	2
Low			27	27		27	6	9					6
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001012195	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001401067	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001401068	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001401069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240776	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079372	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079373	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079375	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079376	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079377	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263703	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263704	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263706	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263708	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263709	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263710	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC083614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474104	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000029778 ⟹ ENSRNOP00000034376

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	838,203 - 865,511 (+)	Ensembl
Rnor_6.0 Ensembl	7	2,831,004 - 2,852,681 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000090689 ⟹ ENSRNOP00000073126

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	840,026 - 865,511 (+)	Ensembl
Rnor_6.0 Ensembl	7	2,827,247 - 2,851,739 (+)	Ensembl

RefSeq Acc Id:

NM_001012195 ⟹ NP_001012195

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	1,426,489 - 1,448,164 (+)	NCBI
mRatBN7.2	7	841,947 - 863,623 (+)	NCBI
Rnor_6.0	7	2,831,004 - 2,852,681 (+)	NCBI
Rnor_5.0	7	2,805,710 - 2,846,908 (+)	NCBI
RGSC_v3.4	7	1,704,204 - 1,725,892 (+)	RGD
Celera	7	715,443 - 737,104 (+)	RGD

Sequence:

show sequence

CAACAAGATGGGATACTTGGAGTGTCTCCTGAGTGGCACCAAGCAGAGGCATCAGGGGCTTGGA
ACCTTGTGAACAGGGAACCTGCCCCCACCACTTAGAAGGACCTGGGTTTCAGTGATGAGACATG
GGGTATGATGTAACCCGGTTCCAGGGGGACGTTGACGAGGACCTCATCTGCCCTATTTGCAGTG
GAGTCTTGGAGGAGCCAGTACAGCAGACGTGTCCGGTAGACCGTAGCGTTGTCACGGTTGCCCA
CCTGCGCCCAGTGCCTCGGATCATGCGGAACATGTTGTCAAAGCTGCAGATTGCCTGTGACAAC
GCTGTGTTTGGCTGCAGTGCTGTTGTCAGGCTTGACAGCCTCATGTCCCACCTCAGTGACTGTG
AGCACAACCCGAAGCGGCCTGTGACCTGCGAGCAGGGCTGCGGCCTGGAGATGCCCAAAGATGA
GCTGCCAAACCACAATTGCATTAAGCACCTGCGCTCCGTGGTCCAGCAGCAGCAGACGCGCATC
GCAGAGCTGGAGAAGACATCTGCTGAACACAAGCACCAGCTGGCAGAACAGAAGCGAGACATTC
AGTTGCTGAAGGCGTATATGCGAGCCATCCGCAGTGTCAACCCCAACCTTCAGAACCTGGAGGA
GACAATCGAGTACAACGAGATCCTTGAGTGGGTGAACTCCCTACAGCCGGCAAGAGTGACGCGC
TGGGGGGGGATGATCTCCACTCCTGACGCTGTGCTGCAGGCTGTAATCAAGCGCTCCCTCGTGG
AAAGTGGCTGCCCAGCTTCTATCGTCAACGAGCTGATCGAAAATGCCCATGAACGCAGCTGGCC
CCAGGGTCTGGCCACACTAGAGACAAGACAGATGAACCGGCGCTACTATGAGAACTACGTGGCC
AAGCGCATCCCTGGCAAGCAGGCTGTGGTGGTGATGGCCTGCGAGAACCAGCACATGGGTGACG
ACATGGTGCAGGAGCCGGGGCTGGTCATGATCTTTGCACATGGTGTGGAGGAGATTTAAGAGCG
TGACTGACTATGAGGAAGAGGTAGAGTGGGAACCTATGGCCGCTCCAGCAGCTGAGCCCTGACC
TCCCCACACACAACCCTGTGCCACGGCTTGTACTGGAGCCTCGCACTCCCTGCTTCTGGCATGA
AGGACCTTGGGCCACTTAGCTCAGCCTTTCAGCGGGGAACCCAAGTTCCTGCCTTTTGCTATAT
TCCTCCCCCCACAATGTCTGTAAATTTTCAGTCAGGGTGGAGAAATCCCCACTTCTGTATTTGC
TGACTAAGATCCCTGGTTCCCAAATATTTTCAGAAAGCACAAAGACACTTGTTTTCCCTAGAGG
GTCAGGGTGGAGTGAGGCATTTCTACACTTGATCTTAGCCAAAAGGCCGAGAAGCGATGAGTGA
GGCATTTCTAATTGTCCCTCTCTTCCAAAACCAGGGGATCCAAGCAGGCAGGCTTGCTGGCTCC
ATGCAGCATTGAGAGAGCAGCTCTGACATCCAGCAGAAGGGCTAACAGTGTGACCAAAGCCCCT
CTAACTAGTGAGGCCAGGACTTGGTCCTCACTAACAGCCCTTGGGGAAGACCTTTGTGCTGAGC
ACATCCCTGTCCAGGCCCCTGTGACTGTGCAGGCCTTGCTGGGTGTGCAGGGAAGGAAGAGGGT
AGGCATTGGTGTTCACGCACTCAGCAGGAAAGCTGTCTGGCTCTGCTGAAGGAGGATACCACTG
CCCCTTGAGGCACGTCTATGTTGCCTCGTAGGCCCCTCTTCAGTCCTGTGATTGTAGTTGGCTG
GATTTCCTTTGGTGTTTGTTTATATTCCCCAAGTCTCAAACCTCATCTGTTACCCAGTCTTGTT
TTCATAGAATGGACTGGCTGTGTCTGTCCTCCGATCCAGCCCAGCCACATTGTTGGCAATTTAA
TTTATTTACTTTTTTTTTTTTAAGAAAGGAGAAAAGAAAAAAAAATGAAGAAAACTTAAAACCT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001401067 ⟹ NP_001387996

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	1,422,754 - 1,448,164 (+)	NCBI
mRatBN7.2	7	838,212 - 863,623 (+)	NCBI

RefSeq Acc Id:

NM_001401068 ⟹ NP_001387997

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	1,422,754 - 1,448,164 (+)	NCBI
mRatBN7.2	7	838,212 - 863,623 (+)	NCBI

RefSeq Acc Id:

NM_001401069 ⟹ NP_001387998

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	1,422,754 - 1,448,164 (+)	NCBI
mRatBN7.2	7	838,212 - 863,623 (+)	NCBI

RefSeq Acc Id:

XM_006240776 ⟹ XP_006240838

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	1,422,703 - 1,448,166 (+)	NCBI
mRatBN7.2	7	838,160 - 866,377 (+)	NCBI
Rnor_6.0	7	2,827,242 - 2,854,230 (+)	NCBI
Rnor_5.0	7	2,805,710 - 2,846,908 (+)	NCBI

Sequence:

show sequence

CCGTTGCGTAGCAGCAGTGGGCGTGGTCAAGGGCTAGCTCGAGAAGGCGAGGAGTGGTCGGAAC
CTTCTTCTCCATCCTTCTCTTCCCCTTCCCCTACGGGGAAAGGTTGAGACCCGAGCGCTCCTGA
TTGTGACATCACACCCACCCCTGGGCCATGAAACTTGTCTCTAGGAAGAAAGACTCAGTTGGAG
AATAGCCAACAAGATGGGATACTTGGAGTGTCTCCTGAGTGGCACCAAGCAGAGGCATCAGGGG
CTTGGAACCTTGTGAACAGGGAACCTGCCCCCACCACTTAGAAGGACCTGGGTTTCAGTGATGA
GACATGGGGTATGATGTAACCCGGTTCCAGGGGGACGTTGACGAGGACCTCATCTGCCCTATTT
GCAGTGGAGTCTTGGAGGAGCCAGTACAGGCGCCTCATTGTGAGCATGCCTTCTGCAACGCCTG
CATCACCCAATGGTTCTCTCAGCAGCAGACGTGTCCGGTAGACCGTAGCGTTGTCACGGTTGCC
CACCTGCGCCCAGTGCCTCGGATCATGCGGAACATGTTGTCAAAGCTGCAGATTGCCTGTGACA
ACGCTGTGTTTGGCTGCAGTGCTGTTGTCAGGCTTGACAGCCTCATGTCCCACCTCAGTGACTG
TGAGCACAACCCGAAGCGGCCTGTGACCTGCGAGCAGGGCTGCGGCCTGGAGATGCCCAAAGAT
GAGCTGCCAAACCACAATTGCATTAAGCACCTGCGCTCCGTGGTCCAGCAGCAGCAGACGCGCA
TCGCAGAGCTGGAGAAGACATCTGCTGAACACAAGCACCAGCTGGCAGAACAGAAGCGAGACAT
TCAGTTGCTGAAGGCGTATATGCGAGCCATCCGCAGTGTCAACCCCAACCTTCAGAACCTGGAG
GAGACAATCGAGTACAACGAGATCCTTGAGTGGGTGAACTCCCTACAGCCGGCAAGAGTGACGC
GCTGGGGGGGGATGATCTCCACTCCTGACGCTGTGCTGCAGGCTGTAATCAAGCGCTCCCTCGT
GGAAAGTGGCTGCCCAGCTTCTATCGTCAACGAGCTGATCGAAAATGCCCATGAACGCAGCTGG
CCCCAGGGTCTGGCCACACTAGAGACAAGACAGATGAACCGGCGCTACTATGAGAACTACGTGG
CCAAGCGCATCCCTGGCAAGCAGGCTGTGGTGGTGATGGCCTGCGAGAACCAGCACATGGGTGA
CGACATGGTGCAGGAGCCGGGGCTGGTCATGATCTTTGCACATGGTGTGGAGGAGATTTAAGAG
CGTGACTGACTATGAGGAAGAGGTAGAGTGGGAACCTATGGCCGCTCCAGCAGCTGAGCCCTGA
CCTCCCCACACACAACCCTGTGCCACGGCTTGTACTGGAGCCTCGCACTCCCTGCTTCTGGCAT
GAAGGACCTTGGGCCACTTAGCTCAGCCTTTCAGCGGGGAACCCAAGTTCCTGCCTTTTGCTAT
ATTCCTCCCCCCACAATGTCTGTAAATTTTCAGTCAGGGTGGAGAAATCCCCACTTCTGTATTT
GCTGACTAAGATCCCTGGTTCCCAAATATTTTCAGAAAGCACAAAGACACTTGTTTTCCCTAGA
GGGTCAGGGTGGAGTGAGGCATTTCTACACTTGATCTTAGCCAAAAGGCCGAGAAGCGATGAGT
GAGGCATTTCTAATTGTCCCTCTCTTCCAAAACCAGGGGATCCAAGCAGGCAGGCTTGCTGGCT
CCATGCAGCATTGAGAGAGCAGCTCTGACATCCAGCAGAAGGGCTAACAGTGTGACCAAAGCCC
CTCTAACTAGTGAGGCCAGGACTTGGTCCTCACTAACAGCCCTTGGGGAAGACCTTTGTGCTGA
GCACATCCCTGTCCAGGCCCCTGTGACTGTGCAGGCCTTGCTGGGTGTGCAGGGAAGGAAGAGG
GTAGGCATTGGTGTTCACGCACTCAGCAGGAAAGCTGTCTGGCTCTGCTGAAGGAGGATACCAC
TGCCCCTTGAGGCACGTCTATGTTGCCTCGTAGGCCCCTCTTCAGTCCTGTGATTGTAGTTGGC
TGGATTTCCTTTGGTGTTTGTTTATATTCCCCAAGTCTCAAACCTCATCTGTTACCCAGTCTTG
TTTTCATAGAATGGACTGGCTGTGTCTGTCCTCCGATCCAGCCCAGCCACATTGTTGGCAATTT
AATTTATTTACTTTTTTTTTTTTAAGAAAGGAGAAAAGAAAAAAAAATGAAGAAAACTTAAAAC
CTTTCTTTCGCCCTTTCTGCTGCTGTCTCTATTGCGGGACTCTGGGTGGGTGGGGCTGTTTCAG
CACAATCTTTGGTCTGACACCTGCACTGACCCTCCCCTCCATCACCCTGTCTGAGCAGGAGCTT
TGGCTGAGGCAGTGCAGCATCAATGCCTGTGCCCCATGAAGACATTTGTTCCCTGCCTCCTGGG
GTCTCCTTGTGAAACCCTAGGATTAATTGGCACACGCATTTCGAAGGTGACTCTACCATGTTTC
CTGAGGAAACTTCCTGTTTCTCTGGGTTCTAACCTTCACCAGACAGATGGAATACAGATTAGAT
ACGTATCTAAAACCAGGCTGAATACACTGCCTAACTCAAGTCCAACTAAGGACTTTGGGTCCAT
TTAAGGCTTACTGGGTCATTGCCGGGTTCCCTGTGGTGGCCAATAGAGTGAGCAAGGAGGAATC
GTAGGTGTGATCATGTTAAAAGCACAGGTGGGAGTGTGCTTGGAGAGGCCCCAGGGCTCCCCTT
CACCAGACACCAGCTTCTCTCCAGGGTCCCATTCGGGGCTAGCTTGCTGTTGGCCTCAGTTGAG
TGGTGGCCCCTTTGGGATTAGGATAGAAGGATATAGCTTGAGGATCATAAGAGGTTGGATGTTC
CAGCTCTGGGGCATTAAGCTCAGGAATTTGAAAAAGGCTGCTATATTTAGTCGGGTTACTGCAT
TTCTTGTTCCTCTTTGCCCCTGCCTACCTTGTCTAAGCCCACACTGTCCTGCCCTTCCTCTGAG
ATGATGGAGGAAGCTGAGGCCTCCGTGCCCTTTGCACTGCTGTCTGCAGCTCTCCGGTTGTGCT
GTGTGCTGTACATAGTGGTCACTGCACTGAGAAATCTCTCTCAAATCTAAAGTCTTACCCCCTC
GAGAAGGGTTCTGCCTTGCTTGGTGGTGTACTTTCCACTGACCTCTGCCTTGGGAGAGTCTGTC
TGGAAATCGTGTACACTTCACCTGCTTTGTGGCGTCCTGTGCTCTGCTGCTTTACCTGTATTCT
CTTCAGAGGATGTTTTTCTAAATGTTCTTGCATTTGGGGGACACTATAGAGGACTTTAGCACCT
CTTTCCAGCAAGTGGAGAAGCTTCTGCTCCCTAGGGTCTCCTGACTAATACGGGAAGGAAACCT
GAAACAGCTCTCCAGCTGTCTTCAAACCTTGATAAGGATTTTCCTGGCCTAGGGACATGGCTCT
GGGGGTGAGAGCTCTTACTGTGCATGAGGATGTGAGTTCAAATTCCCAGCCCCTTCATAAAAAC
AGCATGGCCAAGAGATAACTTCCGCTTTGTGTGGGCAGAGGTAGAAGGCTCACTGGAGCTGGCT
GCTCCCTATCCTAGCTCCGAGTTCAGTGACAGACACTGTCTCAAAGGAATAAGGCAGCCGGGTG
TGGTGGAACATGCTTTTAGTCCCTGAAGGCAGATCTCAGAGAGGAGCCAGCAAGTTTAAAGGAA
TATAGCATAGTAATAAAACAGGACACCATCCTCCTCTTCCAACCACCTTGAAAGCATGACTATG
CACATACATGTCCAA

hide sequence

RefSeq Acc Id:

XM_039079372 ⟹ XP_038935300

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	1,422,727 - 1,448,166 (+)	NCBI
mRatBN7.2	7	838,433 - 866,377 (+)	NCBI

RefSeq Acc Id:

XM_039079373 ⟹ XP_038935301

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	1,422,727 - 1,461,700 (+)	NCBI
mRatBN7.2	7	838,187 - 876,869 (+)	NCBI

RefSeq Acc Id:

XM_039079375 ⟹ XP_038935303

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	1,422,651 - 1,448,166 (+)	NCBI
mRatBN7.2	7	838,186 - 866,377 (+)	NCBI

RefSeq Acc Id:

XM_039079376 ⟹ XP_038935304

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	1,438,095 - 1,448,166 (+)	NCBI
mRatBN7.2	7	853,554 - 866,377 (+)	NCBI

RefSeq Acc Id:

XM_039079377 ⟹ XP_038935305

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	1,444,647 - 1,448,166 (+)	NCBI
mRatBN7.2	7	860,097 - 866,377 (+)	NCBI

RefSeq Acc Id:

XM_063263703 ⟹ XP_063119773

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	1,422,739 - 1,448,166 (+)	NCBI

RefSeq Acc Id:

XM_063263704 ⟹ XP_063119774

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	1,422,736 - 1,461,700 (+)	NCBI

RefSeq Acc Id:

XM_063263705 ⟹ XP_063119775

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	1,422,706 - 1,461,700 (+)	NCBI

RefSeq Acc Id:

XM_063263706 ⟹ XP_063119776

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	1,422,703 - 1,461,700 (+)	NCBI

RefSeq Acc Id:

XM_063263707 ⟹ XP_063119777

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	1,422,736 - 1,448,166 (+)	NCBI

RefSeq Acc Id:

XM_063263708 ⟹ XP_063119778

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	1,422,706 - 1,448,166 (+)	NCBI

RefSeq Acc Id:

XM_063263709 ⟹ XP_063119779

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	1,422,736 - 1,461,700 (+)	NCBI

RefSeq Acc Id:

XM_063263710 ⟹ XP_063119780

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	1,422,736 - 1,461,700 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001012195	(Get FASTA)	NCBI Sequence Viewer
	NP_001387996	(Get FASTA)	NCBI Sequence Viewer
	NP_001387997	(Get FASTA)	NCBI Sequence Viewer
	NP_001387998	(Get FASTA)	NCBI Sequence Viewer
	XP_006240838	(Get FASTA)	NCBI Sequence Viewer
	XP_038935300	(Get FASTA)	NCBI Sequence Viewer
	XP_038935301	(Get FASTA)	NCBI Sequence Viewer
	XP_038935303	(Get FASTA)	NCBI Sequence Viewer
	XP_038935304	(Get FASTA)	NCBI Sequence Viewer
	XP_038935305	(Get FASTA)	NCBI Sequence Viewer
	XP_063119773	(Get FASTA)	NCBI Sequence Viewer
	XP_063119774	(Get FASTA)	NCBI Sequence Viewer
	XP_063119775	(Get FASTA)	NCBI Sequence Viewer
	XP_063119776	(Get FASTA)	NCBI Sequence Viewer
	XP_063119777	(Get FASTA)	NCBI Sequence Viewer
	XP_063119778	(Get FASTA)	NCBI Sequence Viewer
	XP_063119779	(Get FASTA)	NCBI Sequence Viewer
	XP_063119780	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83614	(Get FASTA)	NCBI Sequence Viewer
	EDL84860	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000034376
	ENSRNOP00000034376.5
	ENSRNOP00000073126
	ENSRNOP00000073126.2

RefSeq Acc Id:	NP_001012195 ⟸ NM_001012195
- Peptide Label:	isoform 2
- UniProtKB:	A0A8J8XH25 (UniProtKB/TrEMBL), A0A0G2K4P8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGYDVTRFQGDVDEDLICPICSGVLEEPVQQTCPVDRSVVTVAHLRPVPRIMRNMLSKLQIACD NAVFGCSAVVRLDSLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPNHNCIKHLRSVVQQQQTR IAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQNLEETIEYNEILEWVNSLQPARVT RWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAHERSWPQGLATLETRQMNRRYYENYV AKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIFAHGVEEI hide sequence

RefSeq Acc Id:	XP_006240838 ⟸ XM_006240776
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K4P8 (UniProtKB/TrEMBL), Q5XIR0 (UniProtKB/TrEMBL), G3V930 (UniProtKB/TrEMBL), A6KSD2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGYDVTRFQGDVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAH LRPVPRIMRNMLSKLQIACDNAVFGCSAVVRLDSLMSHLSDCEHNPKRPVTCEQGCGLEMPKDE LPNHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQNLEE TIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAHERSWP QGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIFAHGVEEI hide sequence

RefSeq Acc Id:

ENSRNOP00000073126 ⟸ ENSRNOT00000090689

RefSeq Acc Id:

ENSRNOP00000034376 ⟸ ENSRNOT00000029778

RefSeq Acc Id:	XP_038935303 ⟸ XM_039079375
- Peptide Label:	isoform X2
- UniProtKB:	A0A8J8XH25 (UniProtKB/TrEMBL), A0A0G2K4P8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935301 ⟸ XM_039079373
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIR0 (UniProtKB/TrEMBL), G3V930 (UniProtKB/TrEMBL), A6KSD2 (UniProtKB/TrEMBL), A0A0G2K4P8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935300 ⟸ XM_039079372
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIR0 (UniProtKB/TrEMBL), G3V930 (UniProtKB/TrEMBL), A6KSD2 (UniProtKB/TrEMBL), A0A0G2K4P8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935304 ⟸ XM_039079376
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038935305 ⟸ XM_039079377
- Peptide Label:	isoform X3

RefSeq Acc Id:	NP_001387997 ⟸ NM_001401068
- Peptide Label:	isoform 1
- UniProtKB:	Q5XIR0 (UniProtKB/TrEMBL), G3V930 (UniProtKB/TrEMBL), A6KSD2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001387996 ⟸ NM_001401067
- Peptide Label:	isoform 1
- UniProtKB:	Q5XIR0 (UniProtKB/TrEMBL), G3V930 (UniProtKB/TrEMBL), A6KSD2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001387998 ⟸ NM_001401069
- Peptide Label:	isoform 1
- UniProtKB:	Q5XIR0 (UniProtKB/TrEMBL), G3V930 (UniProtKB/TrEMBL), A6KSD2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119776 ⟸ XM_063263706
- Peptide Label:	isoform X1
- UniProtKB:	A6KSD2 (UniProtKB/TrEMBL), G3V930 (UniProtKB/TrEMBL), Q5XIR0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119775 ⟸ XM_063263705
- Peptide Label:	isoform X1
- UniProtKB:	A6KSD2 (UniProtKB/TrEMBL), G3V930 (UniProtKB/TrEMBL), Q5XIR0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119778 ⟸ XM_063263708
- Peptide Label:	isoform X2
- UniProtKB:	A0A8J8XH25 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119779 ⟸ XM_063263709
- Peptide Label:	isoform X2
- UniProtKB:	A0A8J8XH25 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119774 ⟸ XM_063263704
- Peptide Label:	isoform X1
- UniProtKB:	A6KSD2 (UniProtKB/TrEMBL), G3V930 (UniProtKB/TrEMBL), Q5XIR0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119780 ⟸ XM_063263710
- Peptide Label:	isoform X2
- UniProtKB:	A0A8J8XH25 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119777 ⟸ XM_063263707
- Peptide Label:	isoform X2
- UniProtKB:	A0A8J8XH25 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119773 ⟸ XM_063263703
- Peptide Label:	isoform X1
- UniProtKB:	A6KSD2 (UniProtKB/TrEMBL), G3V930 (UniProtKB/TrEMBL), Q5XIR0 (UniProtKB/TrEMBL)

Protein Domains

E3 ubiquitin-protein ligase NRDP1 RING-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K4P8-F1-model_v2	AlphaFold	A0A0G2K4P8	1-317	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694939

Promoter ID:

EPDNEW_R5462

Type:

initiation region

Name:

Rnf41_1

Description:

ring finger protein 41

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	2,827,316 - 2,827,376	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309557	AgrOrtholog
BioCyc Gene	G2FUF-35369	BioCyc
Ensembl Genes	ENSRNOG00000023456	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000029778	ENTREZGENE
	ENSRNOT00000029778.5	UniProtKB/TrEMBL
	ENSRNOT00000090689.2	UniProtKB/TrEMBL
Gene3D-CATH	3.30.40.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7133774	IMAGE-MGC_LOAD
InterPro	NRDP1_C	UniProtKB/TrEMBL
	USP8_interacting	UniProtKB/TrEMBL
	Znf_RING	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
	Znf_RING_CS	UniProtKB/TrEMBL
KEGG Report	rno:362814	UniProtKB/TrEMBL
MGC_CLONE	MGC:94383	IMAGE-MGC_LOAD
NCBI Gene	362814	ENTREZGENE
PANTHER	E3 UBIQUITIN-PROTEIN LIGASE NRDP1	UniProtKB/TrEMBL
	RING FINGER PROTEIN 41, 151	UniProtKB/TrEMBL
	RING-TYPE DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
	TNF RECEPTOR ASSOCIATED FACTOR	UniProtKB/TrEMBL
Pfam	USP8_interact	UniProtKB/TrEMBL
	zf-C3HC4_2	UniProtKB/TrEMBL
PhenoGen	Rnf41	PhenoGen
PROSITE	ZF_RING_1	UniProtKB/TrEMBL
	ZF_RING_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000023456	RatGTEx
SMART	RING	UniProtKB/TrEMBL
Superfamily-SCOP	RING/U-box	UniProtKB/TrEMBL
	SSF160088	UniProtKB/TrEMBL
	TRAF domain-like	UniProtKB/TrEMBL
UniProt	A0A0G2K4P8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8J8XH25	ENTREZGENE, UniProtKB/TrEMBL
	A6KSD2	ENTREZGENE, UniProtKB/TrEMBL
	G3V930	ENTREZGENE, UniProtKB/TrEMBL
	Q5XIR0	ENTREZGENE
UniProt Secondary	Q5XIR0	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Rnf41	ring finger protein 41	Rnf41_predicted	ring finger protein 41 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Rnf41_predicted	ring finger protein 41 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)