Unk (unkempt family zinc finger) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Unk (unkempt family zinc finger) Mus musculus
Analyze
Symbol: Unk
Name: unkempt family zinc finger
RGD ID: 1551197
MGI Page MGI
Description: Enables mRNA CDS binding activity and ribosome binding activity. Acts upstream of or within in utero embryonic development and neuron migration. Predicted to be located in cytoplasm. Is expressed in central nervous system; early conceptus; future brain; oocyte; and retina nuclear layer. Orthologous to human UNK (unk zinc finger).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: B230379M23Rik; mKIAA1753; RING finger protein unkempt homolog; unkempt homolog; Unkh; Zc3h5; Zc3hdc5; zinc finger CCCH domain-containing protein 5; zinc finger CCCH type containing 5; zinc finger CCCH type domain containing 5
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911115,921,117 - 115,952,040 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11115,921,148 - 115,952,040 (+)EnsemblGRCm39 Ensembl
GRCm3811116,028,616 - 116,061,214 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11116,030,322 - 116,061,214 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711115,891,636 - 115,922,508 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611115,846,412 - 115,877,284 (+)NCBIMGSCv36mm8
Celera11127,792,548 - 127,823,396 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1180.91NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Prediction of the coding sequences of mouse homologues of KIAA gene: III. the complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Aug 31;10(4):167-80.
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1339381   PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15226823  
PMID:15489334   PMID:15618518   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18799693   PMID:20412781   PMID:21677750   PMID:21873635   PMID:24855001   PMID:25737280   PMID:26641712  
PMID:27996060   PMID:29539633   PMID:30973865   PMID:31040226   PMID:31138677   PMID:32325033   PMID:33378226   PMID:33473114   PMID:33634103   PMID:34381067   PMID:36509146  


Genomics

Comparative Map Data
Unk
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911115,921,117 - 115,952,040 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11115,921,148 - 115,952,040 (+)EnsemblGRCm39 Ensembl
GRCm3811116,028,616 - 116,061,214 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11116,030,322 - 116,061,214 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711115,891,636 - 115,922,508 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611115,846,412 - 115,877,284 (+)NCBIMGSCv36mm8
Celera11127,792,548 - 127,823,396 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1180.91NCBI
UNK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381775,784,806 - 75,825,799 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1775,784,806 - 75,825,799 (+)EnsemblGRCh38hg38GRCh38
GRCh371773,780,887 - 73,821,880 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361771,292,276 - 71,333,481 (+)NCBINCBI36Build 36hg18NCBI36
Celera1770,370,731 - 70,411,935 (+)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1769,206,437 - 69,247,636 (+)NCBIHuRef
CHM1_11773,845,995 - 73,886,818 (+)NCBICHM1_1
T2T-CHM13v2.01776,678,053 - 76,718,950 (+)NCBIT2T-CHM13v2.0
Unk
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810101,764,732 - 101,794,847 (+)NCBIGRCr8
mRatBN7.210101,265,732 - 101,295,950 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10101,265,703 - 101,295,967 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.010104,582,531 - 104,613,102 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10104,582,955 - 104,612,033 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010103,672,269 - 103,702,612 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410106,139,489 - 106,169,639 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110106,146,657 - 106,184,153 (+)NCBI
Celera1099,839,358 - 99,869,964 (+)NCBICelera
Cytogenetic Map10q32.1NCBI
Unk
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555066,424,638 - 6,470,874 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555066,424,638 - 6,470,406 (-)NCBIChiLan1.0ChiLan1.0
UNK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21991,828,898 - 91,869,727 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11796,653,617 - 96,694,449 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01769,735,509 - 69,776,345 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11775,285,922 - 75,326,427 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1775,285,922 - 75,326,427 (+)Ensemblpanpan1.1panPan2
UNK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.194,767,696 - 4,801,324 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl94,767,743 - 4,801,235 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha95,447,885 - 5,481,378 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.095,437,874 - 5,471,691 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl95,437,874 - 5,471,662 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.195,477,644 - 5,511,117 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.095,587,735 - 5,621,211 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.095,648,419 - 5,682,105 (-)NCBIUU_Cfam_GSD_1.0
Unk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056025,406,972 - 5,444,552 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936594967,448 - 1,004,966 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936594967,386 - 1,005,085 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UNK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl125,592,503 - 5,628,247 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1125,592,502 - 5,628,249 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2125,539,232 - 5,574,622 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UNK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11645,858,198 - 45,899,367 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1645,857,376 - 45,899,313 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607716,613,886 - 16,656,296 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Unk
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248015,676,521 - 5,719,128 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248015,676,546 - 5,720,483 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Unk
1001 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2098
Count of miRNA genes:696
Interacting mature miRNAs:856
Transcripts:ENSMUST00000021116, ENSMUST00000106452, ENSMUST00000140683, ENSMUST00000150759, ENSMUST00000175702, ENSMUST00000176212, ENSMUST00000176788
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
4141939Pregq2_mpregnancy QTL 2 (mouse)Not determined1194063779118022724Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194190826118890826Mouse
4141465Dbm2_mdiabetes modifier 2 (mouse)Not determined94437183118022724Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196810136121973369Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198352609121973369Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198500469121973369Mouse
10044001Alcw8_malcohol withdrawal 8 (mouse)Not determined1199254187121973369Mouse
11553867Stmm5_mskin tumor modifier of MSM 5 (mouse)11100058103121973369Mouse
11341721Rvfs2_mRift Valley fever susceptibility 2 (mouse)11100254186120887165Mouse
1301012Vispl_mvisual placing (mouse)Not determined11101022590121973369Mouse

Markers in Region
RH132732  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811116,060,848 - 116,061,020UniSTSGRCm38
MGSCv3711115,922,162 - 115,922,334UniSTSGRCm37
Celera11127,823,050 - 127,823,222UniSTS
Cytogenetic Map11E2UniSTS
RH124791  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811116,036,669 - 116,036,787UniSTSGRCm38
MGSCv3711115,897,983 - 115,898,101UniSTSGRCm37
Celera11127,798,895 - 127,799,013UniSTS
Cytogenetic Map11E2UniSTS
D11Wsu173e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811116,036,591 - 116,036,816UniSTSGRCm38
MGSCv3711115,897,905 - 115,898,130UniSTSGRCm37
Celera11127,798,817 - 127,799,042UniSTS
Cytogenetic Map11E2UniSTS
cM Map1170.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001286006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001779962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001779963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001779964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003949402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK046395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL607108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB619163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC005545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC033048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC039964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC054452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000021116   ⟹   ENSMUSP00000021116
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11115,921,148 - 115,952,040 (+)Ensembl
GRCm38.p6 Ensembl11116,030,322 - 116,061,214 (+)Ensembl
RefSeq Acc Id: ENSMUST00000106452   ⟹   ENSMUSP00000102060
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11115,921,148 - 115,952,040 (+)Ensembl
GRCm38.p6 Ensembl11116,030,322 - 116,061,214 (+)Ensembl
RefSeq Acc Id: ENSMUST00000140683
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11115,946,724 - 115,949,932 (+)Ensembl
GRCm38.p6 Ensembl11116,055,898 - 116,059,106 (+)Ensembl
RefSeq Acc Id: ENSMUST00000150759
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11115,929,483 - 115,952,040 (+)Ensembl
GRCm38.p6 Ensembl11116,038,657 - 116,061,214 (+)Ensembl
RefSeq Acc Id: ENSMUST00000175702
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11115,944,121 - 115,946,893 (+)Ensembl
GRCm38.p6 Ensembl11116,053,295 - 116,056,067 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176212
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11115,940,125 - 115,944,504 (+)Ensembl
GRCm38.p6 Ensembl11116,049,299 - 116,053,678 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176788
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11115,921,149 - 115,931,876 (+)Ensembl
GRCm38.p6 Ensembl11116,030,323 - 116,041,050 (+)Ensembl
RefSeq Acc Id: NM_001286006   ⟹   NP_001272935
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911115,921,142 - 115,952,040 (+)NCBI
GRCm3811116,030,316 - 116,061,214 (+)NCBI
Celera11127,792,542 - 127,823,416 (+)NCBI
Sequence:
RefSeq Acc Id: NM_172569   ⟹   NP_766157
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911115,921,142 - 115,952,040 (+)NCBI
GRCm3811116,030,316 - 116,061,214 (+)NCBI
MGSCv3711115,891,636 - 115,922,508 (+)RGD
Celera11127,792,542 - 127,823,416 (+)NCBI
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006533088   ⟹   XP_006533151
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911115,921,117 - 115,952,040 (+)NCBI
GRCm3811116,028,616 - 116,061,214 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006533089   ⟹   XP_006533152
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911115,921,228 - 115,952,040 (+)NCBI
GRCm3811116,030,323 - 116,061,214 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017314490   ⟹   XP_017169979
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911115,921,289 - 115,952,040 (+)NCBI
GRCm3811116,030,340 - 116,061,214 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245897   ⟹   XP_030101757
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911115,921,166 - 115,952,040 (+)NCBI
GRCm3811116,030,323 - 116,061,214 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156605   ⟹   XP_036012498
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911115,921,229 - 115,952,040 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156606   ⟹   XP_036012499
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911115,921,228 - 115,952,040 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001779962
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911115,921,117 - 115,952,040 (+)NCBI
GRCm3811116,028,616 - 116,061,214 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001779963
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911115,921,117 - 115,952,040 (+)NCBI
GRCm3811116,028,616 - 116,061,214 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001779964
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911115,921,117 - 115,952,040 (+)NCBI
GRCm3811116,028,616 - 116,061,214 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003949402
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911115,921,117 - 115,952,040 (+)NCBI
GRCm3811116,028,616 - 116,061,214 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_766157   ⟸   NM_172569
- Peptide Label: isoform 1
- UniProtKB: Q99JZ8 (UniProtKB/Swiss-Prot),   Q8BVI6 (UniProtKB/Swiss-Prot),   A2A853 (UniProtKB/Swiss-Prot),   Q99LL9 (UniProtKB/Swiss-Prot),   Q8BL48 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001272935   ⟸   NM_001286006
- Peptide Label: isoform 2
- UniProtKB: Q3UYU7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006533151   ⟸   XM_006533088
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006533152   ⟸   XM_006533089
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017169979   ⟸   XM_017314490
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_030101757   ⟸   XM_030245897
- Peptide Label: isoform X3
RefSeq Acc Id: ENSMUSP00000102060   ⟸   ENSMUST00000106452
RefSeq Acc Id: ENSMUSP00000021116   ⟸   ENSMUST00000021116
RefSeq Acc Id: XP_036012499   ⟸   XM_036156606
- Peptide Label: isoform X5
RefSeq Acc Id: XP_036012498   ⟸   XM_036156605
- Peptide Label: isoform X4
- UniProtKB: Q3V2Z5 (UniProtKB/TrEMBL)
Protein Domains
C3H1-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BL48-F1-model_v2 AlphaFold Q8BL48 1-810 view protein structure

Promoters
RGD ID:6822423
Promoter ID:MM_KWN:10603
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000021116,   ENSMUST00000106452
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611115,891,416 - 115,892,102 (+)MPROMDB
RGD ID:6846932
Promoter ID:MM_ACW:9444
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour
Transcripts:UNK.HSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611115,919,526 - 115,920,026 (+)MPROMDB
RGD ID:8677412
Promoter ID:EPDNEW_M16737
Type:initiation region
Name:Unk_1
Description:Mus musculus unkempt family zinc finger , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16738  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811116,030,340 - 116,030,400EPDNEW
RGD ID:8677414
Promoter ID:EPDNEW_M16738
Type:single initiation site
Name:Unk_2
Description:Mus musculus unkempt family zinc finger , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16737  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811116,045,722 - 116,045,782EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2442456 AgrOrtholog
Ensembl Genes ENSMUSG00000020770 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000021116 ENTREZGENE
  ENSMUST00000021116.12 UniProtKB/Swiss-Prot
  ENSMUST00000106452 ENTREZGENE
  ENSMUST00000106452.2 UniProtKB/Swiss-Prot
  ENSMUST00000150759 ENTREZGENE
Gene3D-CATH Zinc finger, CCCH-type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Unkempt-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Unkempt_Znf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_CCCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_CCCH_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:217331 UniProtKB/Swiss-Prot
MGD MGI:2442456 ENTREZGENE
NCBI Gene 217331 ENTREZGENE
PANTHER PTHR14493 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RING FINGER PROTEIN UNKEMPT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam zf-CCCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf_CCCH_5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Unk PhenoGen
PROSITE ZF_C3H1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ZnF_C3H1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF90229 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2A853 ENTREZGENE
  Q3UYU7 ENTREZGENE, UniProtKB/TrEMBL
  Q3V2Z5 ENTREZGENE, UniProtKB/TrEMBL
  Q8BL48 ENTREZGENE
  Q8BVI6 ENTREZGENE
  Q99JZ8 ENTREZGENE
  Q99LL9 ENTREZGENE
  UNK_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary A2A853 UniProtKB/Swiss-Prot
  Q8BVI6 UniProtKB/Swiss-Prot
  Q99JZ8 UniProtKB/Swiss-Prot
  Q99LL9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-14 Unk  unkempt family zinc finger    unkempt homolog (Drosophila)  Symbol and/or name change 5135510 APPROVED