UNK (unk zinc finger) - Rat Genome Database

Name: UNK
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: UNK (unk zinc finger) Chlorocebus sabaeus

Analyze

Symbol:

UNK

Name:

unk zinc finger

RGD ID:

18378958

Description:

ENCODES a protein that exhibits mRNA CDS binding (ortholog); ribosome binding (ortholog); INVOLVED IN cell morphogenesis involved in neuron differentiation (ortholog); in utero embryonic development (ortholog); negative regulation of cytoplasmic translation (ortholog); FOUND IN cytoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

RING finger protein unkempt homolog; unkempt family zinc finger

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	UNK (unk zinc finger)	NCBI	Ortholog
Mus musculus (house mouse):	Unk (unkempt family zinc finger)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Unk (unk zinc finger)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Unk (unk zinc finger)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	UNK (unk zinc finger)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	UNK (unk zinc finger)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Unk (unk zinc finger)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	UNK (unk zinc finger)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Unk (unk zinc finger)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	45,858,198 - 45,899,367 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	45,857,376 - 45,899,313 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	16,613,886 - 16,656,296 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell morphogenesis involved in neuron differentiation (ISO)

in utero embryonic development (ISO)

negative regulation of cytoplasmic translation (ISO)

neuron migration (ISO)

Cellular Component

cytoplasm (IEA)

Molecular Function

metal ion binding (IEA)

mRNA CDS binding (ISO)

ribosome binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

UNK
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	45,858,198 - 45,899,367 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	45,857,376 - 45,899,313 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	16,613,886 - 16,656,296 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

UNK
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	75,784,806 - 75,825,799 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	75,784,806 - 75,825,799 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	73,780,887 - 73,821,880 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	71,292,276 - 71,333,481 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	17	70,370,731 - 70,411,935 (+)	NCBI		Celera
Cytogenetic Map	17	q25.1	NCBI
HuRef	17	69,206,437 - 69,247,636 (+)	NCBI		HuRef
CHM1_1	17	73,845,995 - 73,886,818 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	76,678,053 - 76,718,950 (+)	NCBI		T2T-CHM13v2.0

Unk
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	115,921,117 - 115,952,040 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	115,921,148 - 115,952,040 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	116,028,616 - 116,061,214 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	116,030,322 - 116,061,214 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	115,891,636 - 115,922,508 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	115,846,412 - 115,877,284 (+)	NCBI		MGSCv36	mm8
Celera	11	127,792,548 - 127,823,396 (+)	NCBI		Celera
Cytogenetic Map	11	E2	NCBI
cM Map	11	80.91	NCBI

Unk
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	101,764,732 - 101,794,847 (+)	NCBI		GRCr8
mRatBN7.2	10	101,265,732 - 101,295,950 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	101,265,703 - 101,295,967 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	10	104,582,531 - 104,613,102 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	104,582,955 - 104,612,033 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	103,672,269 - 103,702,612 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	106,139,489 - 106,169,639 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	106,146,657 - 106,184,153 (+)	NCBI
Celera	10	99,839,358 - 99,869,964 (+)	NCBI		Celera
Cytogenetic Map	10	q32.1	NCBI

Unk
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955506	6,424,638 - 6,470,874 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955506	6,424,638 - 6,470,406 (-)	NCBI	ChiLan1.0	ChiLan1.0

UNK
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	91,828,898 - 91,869,727 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	96,653,617 - 96,694,449 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	69,735,509 - 69,776,345 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	75,285,922 - 75,326,427 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	75,285,922 - 75,326,427 (+)	Ensembl	panpan1.1		panPan2

UNK
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	4,767,696 - 4,801,324 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	4,767,743 - 4,801,235 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	5,447,885 - 5,481,378 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	5,437,874 - 5,471,691 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	5,437,874 - 5,471,662 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	5,477,644 - 5,511,117 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	5,587,735 - 5,621,211 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	5,648,419 - 5,682,105 (-)	NCBI		UU_Cfam_GSD_1.0

Unk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	5,406,972 - 5,444,552 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936594	967,448 - 1,004,966 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936594	967,386 - 1,005,085 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

UNK
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	5,592,503 - 5,628,247 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	5,592,502 - 5,628,249 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	5,539,232 - 5,574,622 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Unk
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624801	5,676,521 - 5,719,128 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624801	5,676,546 - 5,720,483 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium	30		20
Low	6	20	40
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008011724	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008011725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008011726	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037993462	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037993463	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000002890 ⟹ ENSCSAP00000001180

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	16	45,857,376 - 45,899,313 (-)	Ensembl

RefSeq Acc Id:

XM_008011724 ⟹ XP_008009915

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	16	45,858,198 - 45,899,317 (-)	NCBI
Vero_WHO_p1.0	NW_023666077	16,613,886 - 16,656,291 (-)	NCBI

Sequence:

show sequence

AAGCGTACTGGGTCCTCGGCGCGGACCGCGCAGACTGAATAATAAAAGGGGAGCGGCGAAGAGG
CAGGAAGACAAGACCATGTCGAAGGGCCCCGGGCCCGGCGGCTCCGCAGCTTCCTCGGCGCCCC
CGGCCGCTACCGCTCAGGTGCTGCAGGCACAGCCCGAGAAACCGCAGCACTACACGTACCTGAA
AGAATTCCGCACGGAGCAGTGCCCACTCTTTGTGCAACACAAATGCACGCAGCATCGGCCCTAC
ACCTGCTTCCACTGGCACTTCGTGAACCAGCGGCGCCGCCGGTCCATCCGCCGTCGGGACGGCA
CCTTCAATTACAGCCCTGACGTCTACTGCACCAAGTACGACGAGGCTACAGGCCTCTGCCCGGA
GGGCGACGAGTGCCCATTCCTGCACAGAACCACAGGAGACACTGAGCGCAGGTACCACCTTCGT
TACTACAAAACTGGAATCTGCATCCACGAGACAGACTCAAAAGGCAACTGCACCAAAAACGGCC
TGCACTGCGCTTTTGCCCACGGGCCCCATGACCTCCGCTCCCCTGTCTACGACATCAGGGAGCT
TCAGGCCATGGAGGCCTTGCAGAATGGCCAGACCACAGTAGAAGGGAGCATAGAGGGCCAGTCG
GCTGGGGCTGCGAGCCACGCCATGATAGAAAAGATCCTCAGCGAGGAGCCTCGGTGGCAAGAGA
CTGCTTATGTGCTGGGGAACTATAAGACGGAGCCTTGCAAGAAGCCCCCGCGGCTGTGCCGCCA
AGGCTATGCCTGTCCCTACTACCACAACAGCAAGGACCGGCGGCGGAGCCCCCGGAAGCACAAA
TACAGGTCATCTCCATGTCCAAACGTCAAGCACGGGGATGAGTGGGGAGACCCTGGCAAGTGTG
AGAATGGAGACGCCTGCCAGTACTGCCACACCCGCACCGAGCAGCAGTTCCACCCCGAGATCTA
CAAGTCCACCAAGTGCAACGACATGCAGCAGTCGGGCAGCTGTCCCCGAGGACCCTTCTGCGCC
TTTGCCCACGTAGAACAGCCACCCCTAAGTGACGACCTGCAGCCTTCCTCAGCTGTGTCCAGTC
CCACCCAGCCGGGTCCTGTCCTGTACATGCCGTCTGCTGCCGGAGACTCGGTGCCTGTGAGCCC
CTCCAGCCCGCATGCCCCTGACCTCAGTGCCCTCCTCTGTAGAAACAGCAGCCTAGGCAGCCCG
TCTAACCTCTGCAGCTCCCCGCCGGGCTCCATCAGGAAGCCCCCAAACCTGGAGGGCATTGTCT
TCCCCGGGGAGTCTGGCCTGGCCCCTGGCAGCTATAAGAAGGCTCCCGGCTTTGAGAGGGAAGA
CCAGGCCAAATTAAAACCCCACTCATTAGAGTCCAGGAGTCAAGAGCAGCCTCTGCTTCAGCCC
AAACAGGATATGCTGGGCATCCTCCCCGCAGGCAGCCCCCTGACCTCAAGCATCTCTTCTAGTA
TCACCTCCAGCCTGGCAGCCACCCCCCCTAGCCCAGTGGGCACCAGCAGCGTCCCCGGCATGAA
TGCAAACGCTCTGCCCTTCTACCCCACCAGCGACACGGTAGAGTCAGTCATAGAGTCTGCTTTG
GATGACTTGGACCTGAATGAGTTTGGTGTGGCCGCCCTGGAAAAGACTTTCGATAACAGCACAG
TGCCCCACCCAGGAAGCATCACCATCGGCGGCAGCTTGCTGCAGAGCTCTGCGCCCGTGAACAT
CCCCGGCTCCTTGGGCAGCTCTGCCTCCTTCCATTCAGCATCCCCATCCCCTCCTGTCAGCATC
TCCTCGCATTTCCTGCAGCAGCCCCAGGGCCACCTGAGCCAGTCGGAAAACACATTTTTGGGAA
CCTCAGCATCACATGGATCTTTGGGTCTGAACGGGATGAACAGCAGCATCTGGGAGCACTTTGC
CTCTGGAAGCTTCTCCCCGGGCACTTCCCCTGCTTTCCTATCAGGGCCAGGGGCTGCTGAGCTG
GCCCGACTTCGGCAAGAGCTAGATGAAGCCAACAGCACCATCAAGCAGTGGGAGGAGTCCTGGA
AGCAGGCCAAGCAGGCTTGTGATGCCTGGAAGAAAGAGGCGGAGGAGGCTGGTGAGCGGGCCAG
TGCAGCGGGTGCCGAGTGCGAGCTGGCCCGGGAGCAGCGGGATGCACTGGAGGTGCAGGTGAAG
AAACTCCAGGAAGAGCTGGAGCGGCTACACGCAGGGCCCGAGCCCCAGGCCCTGCCCGCCTTCT
CTGACCTGGAGACACTCTCACTCTCCACCCTCTACTCCCTCCAGAAGCAGCTGCGGGCCCATCT
GGAACAAGTGGACAAGGCCGTGTTCCACATGCAGTCGGTGAAATGCCTTAAGTGTCAGGAACAG
AAGCGGGCAGTGCTGCCGTGCCAACATGCTGCGCTGTGTGAGCTCTGCGCTGAGGGCAGCGAGT
GCCCCATCTGCCAGCCTGGCCGGGCCCATGCCCTCCAGTCGTGACCCTGCAGGCCTGGCCCAGC
CTGGCCCAGATCTTCTCACCTAGGACTTTTTAAAGTATATATATATATATATATATATGAATAT
ATATATATATATGTGTATGTATGTATGTATATGTATATGATTATGTATATGTATACATTTCTGT
ATGTGTGCAGGTATGCGTGGTGGTGTGGACAGTGTCTGTGTGTATATCTGTACATAGATATAGA
CACACACTTTAAAAGACTTACCAAGCACTTTTTAAAAGAAGAAACTATTTTGCAGTCCTCCCCT
ACCCACTCCCTGCCCTTCCTACCGCAGAGACGACATCCCCTCTTCTCCCACTGGCCTTTTGGCA
GATAATCTGTTTCTGTCTCTTTTTTAATGTAGGAACTAACTATTTTTAACTTCTTCCTGGGGCC
TGAGCAGGGAAGGGTGGGACTGGAAGGCACTAAGGGGAGGGGAGAAGCCCTCAGGGCAGGCCCT
GCTCCCCCTACCTCCTTGCCAGGGCAAGGGTGGAGTGTGGAAGACGTGGGTCCCCCAGAGCAGG
CCTGGCCCCCAGCTGTGAGGGCCTTGGAGGCCTGAGGGGGTGTGCTGGGGGTCTCAGTTGGCTT
AGCTCCTAGGTTTACCAAATGTATAGTCCTGGGGAGAACAGTAAGGGCTGGAGGCCAGTGCTGC
AGGGCCAGCCCCACTCCCAACACCTGGGCCCTTGAAGCTCCTCAAGGAGCAAGGCCCAGGAGTT
ACAGCCCTCAGGTTCCTGAGGGTCCACCCTCAGTCCTCTCCCCCTGGACTCCCCACAAGAGCCT
CCTGGCCCCCAGGGCCACCTACCAGGCTGGCACTCATTCTATGACCTCCCCACCCCCCCGACCA
CTACCAGCTGCCCCCAGCTCTCCCTGCCCCCTCCCCTCTCTGGCAGCTAGCAGGGCAATTGGCG
GGGAGGAGTGCAGACTGAGGACCAAGGGGGCCCAGGCCCTGCCCTCCTAGCTGGAGGGGCTCCG
TATGCATTCCTTGGTGCTCTCTGAGTGCAGCTGGTGTCCCGCCCTGTTCTGGGCGGACGCCTGT
GTGCGTGTGTGTGTGCCTGTCCAGTGTATATCGTGTCTTAGCTTCCATTTTAAAAATTGTTCTG
TACAGAGAGAGATGCAGCAGGGGCGGGAGGGCAGAGCGGGCGGAGGGGAGCAGCCGCACCCCAG
CACCGGGTGTCTGGGGTAGGAGCCAGAGGGCTGAGAGGGTCTGGCCCTGGCCCAGGCTCCCCCT
TGGGCTCAGCACGAAAGGGCTTTCAATGAGTTAAGTGAAAACTTTTTCCTTTTTTACAAAAATG
CAAAAATCAACAAAGCTCCAAACCTATTGGAAATAAAATATGAACTTGCA

hide sequence

RefSeq Acc Id:

XM_008011725 ⟹ XP_008009916

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	16	45,858,198 - 45,899,223 (-)	NCBI
Vero_WHO_p1.0	NW_023666077	16,613,886 - 16,656,296 (-)	NCBI

Sequence:

show sequence

GGGCCCGGCGGCTCCGCAGCTTCCTCGGCGCCCCCGGCCGCTACCGCTCAGGTGCTGCAGGCAC
AGCCCGAGAAACCGCAGCACTACACCTATGTTAGATACTAAAGAAGGCTTCCCCACAACCCATA
TGCATCTGCTTTGACTGGTGGTTTCTATCATCCTACAAAGACTGTGACTTATTGGTGAGGGCAG
CTGGACAACTCTGAGAGCAACTTAGAGAAATCCATCTTGGGCACACTCTATAAAGGAGCTCCTT
CTCTGCAAATAGCACCCCAGATAAGTGCACAAAAGCAAGATACCCTCGTGGACCTACACGTCCT
CCCGCTTTTCAACACCCTGATGCCTGCAGCTATGGTTGATACTAAAGGAGGTTTTCCCACTATC
CGTATGCATCTTCTATGTTTTGAAATTGCAACTATGGACAGTTATGGCTAATCGTAGTAGATTG
TCTTCCCTTCTTTTAACATCTTGGATGAATTTGGGTCACACTAATTGTTATGTGAAGATGGATG
TTGAATGTACCTGAAAGAATTCCGCACGGAGCAGTGCCCACTCTTTGTGCAACACAAATGCACG
CAGCATCGGCCCTACACCTGCTTCCACTGGCACTTCGTGAACCAGCGGCGCCGCCGGTCCATCC
GCCGTCGGGACGGCACCTTCAATTACAGCCCTGACGTCTACTGCACCAAGTACGACGAGGCTAC
AGGCCTCTGCCCGGAGGGCGACGAGTGCCCATTCCTGCACAGAACCACAGGAGACACTGAGCGC
AGGTACCACCTTCGTTACTACAAAACTGGAATCTGCATCCACGAGACAGACTCAAAAGGCAACT
GCACCAAAAACGGCCTGCACTGCGCTTTTGCCCACGGGCCCCATGACCTCCGCTCCCCTGTCTA
CGACATCAGGGAGCTTCAGGCCATGGAGGCCTTGCAGAATGGCCAGACCACAGTAGAAGGGAGC
ATAGAGGGCCAGTCGGCTGGGGCTGCGAGCCACGCCATGATAGAAAAGATCCTCAGCGAGGAGC
CTCGGTGGCAAGAGACTGCTTATGTGCTGGGGAACTATAAGACGGAGCCTTGCAAGAAGCCCCC
GCGGCTGTGCCGCCAAGGCTATGCCTGTCCCTACTACCACAACAGCAAGGACCGGCGGCGGAGC
CCCCGGAAGCACAAATACAGGTCATCTCCATGTCCAAACGTCAAGCACGGGGATGAGTGGGGAG
ACCCTGGCAAGTGTGAGAATGGAGACGCCTGCCAGTACTGCCACACCCGCACCGAGCAGCAGTT
CCACCCCGAGATCTACAAGTCCACCAAGTGCAACGACATGCAGCAGTCGGGCAGCTGTCCCCGA
GGACCCTTCTGCGCCTTTGCCCACGTAGAACAGCCACCCCTAAGTGACGACCTGCAGCCTTCCT
CAGCTGTGTCCAGTCCCACCCAGCCGGGTCCTGTCCTGTACATGCCGTCTGCTGCCGGAGACTC
GGTGCCTGTGAGCCCCTCCAGCCCGCATGCCCCTGACCTCAGTGCCCTCCTCTGTAGAAACAGC
AGCCTAGGCAGCCCGTCTAACCTCTGCAGCTCCCCGCCGGGCTCCATCAGGAAGCCCCCAAACC
TGGAGGGCATTGTCTTCCCCGGGGAGTCTGGCCTGGCCCCTGGCAGCTATAAGAAGGCTCCCGG
CTTTGAGAGGGAAGACCAGGTGGGAGCCGAGTACCTGAAAAATTTCAAATGCCAGGCCAAATTA
AAACCCCACTCATTAGAGTCCAGGAGTCAAGAGCAGCCTCTGCTTCAGCCCAAACAGGATATGC
TGGGCATCCTCCCCGCAGGCAGCCCCCTGACCTCAAGCATCTCTTCTAGTATCACCTCCAGCCT
GGCAGCCACCCCCCCTAGCCCAGTGGGCACCAGCAGCGTCCCCGGCATGAATGCAAACGCTCTG
CCCTTCTACCCCACCAGCGACACGGTAGAGTCAGTCATAGAGTCTGCTTTGGATGACTTGGACC
TGAATGAGTTTGGTGTGGCCGCCCTGGAAAAGACTTTCGATAACAGCACAGTGCCCCACCCAGG
AAGCATCACCATCGGCGGCAGCTTGCTGCAGAGCTCTGCGCCCGTGAACATCCCCGGCTCCTTG
GGCAGCTCTGCCTCCTTCCATTCAGCATCCCCATCCCCTCCTGTCAGCATCTCCTCGCATTTCC
TGCAGCAGCCCCAGGGCCACCTGAGCCAGTCGGAAAACACATTTTTGGGAACCTCAGCATCACA
TGGATCTTTGGGTCTGAACGGGATGAACAGCAGCATCTGGGAGCACTTTGCCTCTGGAAGCTTC
TCCCCGGGCACTTCCCCTGCTTTCCTATCAGGGCCAGGGGCTGCTGAGCTGGCCCGACTTCGGC
AAGAGCTAGATGAAGCCAACAGCACCATCAAGCAGTGGGAGGAGTCCTGGAAGCAGGCCAAGCA
GGCTTGTGATGCCTGGAAGAAAGAGGCGGAGGAGGCTGGTGAGCGGGCCAGTGCAGCGGGTGCC
GAGTGCGAGCTGGCCCGGGAGCAGCGGGATGCACTGGAGGTGCAGGTGAAGAAACTCCAGGAAG
AGCTGGAGCGGCTACACGCAGGGCCCGAGCCCCAGGCCCTGCCCGCCTTCTCTGACCTGGAGAC
ACTCTCACTCTCCACCCTCTACTCCCTCCAGAAGCAGCTGCGGGCCCATCTGGAACAAGTGGAC
AAGGCCGTGTTCCACATGCAGTCGGTGAAATGCCTTAAGTGTCAGGAACAGAAGCGGGCAGTGC
TGCCGTGCCAACATGCTGCGCTGTGTGAGCTCTGCGCTGAGGGCAGCGAGTGCCCCATCTGCCA
GCCTGGCCGGGCCCATGCCCTCCAGTCGTGACCCTGCAGGCCTGGCCCAGCCTGGCCCAGATCT
TCTCACCTAGGACTTTTTAAAGTATATATATATATATATATATATGAATATATATATATATATG
TGTATGTATGTATGTATATGTATATGATTATGTATATGTATACATTTCTGTATGTGTGCAGGTA
TGCGTGGTGGTGTGGACAGTGTCTGTGTGTATATCTGTACATAGATATAGACACACACTTTAAA
AGACTTACCAAGCACTTTTTAAAAGAAGAAACTATTTTGCAGTCCTCCCCTACCCACTCCCTGC
CCTTCCTACCGCAGAGACGACATCCCCTCTTCTCCCACTGGCCTTTTGGCAGATAATCTGTTTC
TGTCTCTTTTTTAATGTAGGAACTAACTATTTTTAACTTCTTCCTGGGGCCTGAGCAGGGAAGG
GTGGGACTGGAAGGCACTAAGGGGAGGGGAGAAGCCCTCAGGGCAGGCCCTGCTCCCCCTACCT
CCTTGCCAGGGCAAGGGTGGAGTGTGGAAGACGTGGGTCCCCCAGAGCAGGCCTGGCCCCCAGC
TGTGAGGGCCTTGGAGGCCTGAGGGGGTGTGCTGGGGGTCTCAGTTGGCTTAGCTCCTAGGTTT
ACCAAATGTATAGTCCTGGGGAGAACAGTAAGGGCTGGAGGCCAGTGCTGCAGGGCCAGCCCCA
CTCCCAACACCTGGGCCCTTGAAGCTCCTCAAGGAGCAAGGCCCAGGAGTTACAGCCCTCAGGT
TCCTGAGGGTCCACCCTCAGTCCTCTCCCCCTGGACTCCCCACAAGAGCCTCCTGGCCCCCAGG
GCCACCTACCAGGCTGGCACTCATTCTATGACCTCCCCACCCCCCCGACCACTACCAGCTGCCC
CCAGCTCTCCCTGCCCCCTCCCCTCTCTGGCAGCTAGCAGGGCAATTGGCGGGGAGGAGTGCAG
ACTGAGGACCAAGGGGGCCCAGGCCCTGCCCTCCTAGCTGGAGGGGCTCCGTATGCATTCCTTG
GTGCTCTCTGAGTGCAGCTGGTGTCCCGCCCTGTTCTGGGCGGACGCCTGTGTGCGTGTGTGTG
TGCCTGTCCAGTGTATATCGTGTCTTAGCTTCCATTTTAAAAATTGTTCTGTACAGAGAGAGAT
GCAGCAGGGGCGGGAGGGCAGAGCGGGCGGAGGGGAGCAGCCGCACCCCAGCACCGGGTGTCTG
GGGTAGGAGCCAGAGGGCTGAGAGGGTCTGGCCCTGGCCCAGGCTCCCCCTTGGGCTCAGCACG
AAAGGGCTTTCAATGAGTTAAGTGAAAACTTTTTCCTTTTTTACAAAAATGCAAAAATCAACAA
AGCTCCAAACCTATTGGAAATAAAATATGAACTTGCA

hide sequence

RefSeq Acc Id:

XM_008011726 ⟹ XP_008009917

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	16	45,858,198 - 45,899,367 (-)	NCBI
Vero_WHO_p1.0	NW_023666077	16,613,886 - 16,656,291 (-)	NCBI

Sequence:

show sequence

GCAACCCATGCTGCCGTGTGGGGGGTCTTCACGTTCTCGTGGCGCGGCGCAAGCGTACTGGGTC
CTCGGCGCGGACCGCGCAGACTGAATAATAAAAGGGGAGCGGCGAAGAGGCAGGAAGACAAGAC
CATGTCGAAGGGCCCCGGGCCCGGCGGCTCCGCAGCTTCCTCGGCGCCCCCGGCCGCTACCGCT
CAGGTGCTGCAGGCACAGCCCGAGAAACCGCAGCACTACACGTACCTGAAAGAATTCCGCACGG
AGCAGTGCCCACTCTTTGTGCAACACAAATGCACGCAGCATCGGCCCTACACCTGCTTCCACTG
GCACTTCGTGAACCAGCGGCGCCGCCGGTCCATCCGCCGTCGGGACGGCACCTTCAATTACAGC
CCTGACGTCTACTGCACCAAGTACGACGAGGCTACAGGCCTCTGCCCGGAGGGCGACGAGTGCC
CATTCCTGCACAGAACCACAGGAGACACTGAGCGCAGGTACCACCTTCGTTACTACAAAACTGG
AATCTGCATCCACGAGACAGACTCAAAAGGCAACTGCACCAAAAACGGCCTGCACTGCGCTTTT
GCCCACGGGCCCCATGACCTCCGCTCCCCTGTCTACGACATCAGGGAGCTTCAGGCCATGGAGG
CCTTGCAGAATGGCCAGACCACAGTAGAAGGGAGCATAGAGGGCCAGTCGGCTGGGGCTGCGAG
CCACGCCATGATAGAAAAGATCCTCAGCGAGGAGCCTCGGTGGCAAGAGACTGCTTATGTGCTG
GGGAACTATAAGACGGAGCCTTGCAAGAAGCCCCCGCGGCTGTGCCGCCAAGGCTATGCCTGTC
CCTACTACCACAACAGCAAGGACCGGCGGCGGAGCCCCCGGAAGCACAAATACAGGTCATCTCC
ATGTCCAAACGTCAAGCACGGGGATGAGTGGGGAGACCCTGGCAAGTGTGAGAATGGAGACGCC
TGCCAGTACTGCCACACCCGCACCGAGCAGCAGTTCCACCCCGAGATCTACAAGTCCACCAAGT
GCAACGACATGCAGCAGTCGGGCAGCTGTCCCCGAGGACCCTTCTGCGCCTTTGCCCACGTAGA
ACAGCCACCCCTAAGTGACGACCTGCAGCCTTCCTCAGCTGTGTCCAGTCCCACCCAGCCGGGT
CCTGTCCTGTACATGCCGTCTGCTGCCGGAGACTCGGTGCCTGTGAGCCCCTCCAGCCCGCATG
CCCCTGACCTCAGTGCCCTCCTCTGTAGAAACAGCAGCCTAGGCAGCCCGTCTAACCTCTGCAG
CTCCCCGCCGGGCTCCATCAGGAAGCCCCCAAACCTGGAGGGCATTGTCTTCCCCGGGGAGTCT
GGCCTGGCCCCTGGCAGCTATAAGAAGGCTCCCGGCTTTGAGAGGGAAGACCAGGTGGGAGCCG
AGTACCTGAAAAATTTCAAATGCCAGGCCAAATTAAAACCCCACTCATTAGAGTCCAGGAGTCA
AGAGCAGCCTCTGCTTCAGCCCAAACAGGATATGCTGGGCATCCTCCCCGCAGGCAGCCCCCTG
ACCTCAAGCATCTCTTCTAGTATCACCTCCAGCCTGGCAGCCACCCCCCCTAGCCCAGTGGGCA
CCAGCAGCGTCCCCGGCATGAATGCAAACGCTCTGCCCTTCTACCCCACCAGCGACACGGTAGA
GTCAGTCATAGAGTCTGCTTTGGATGACTTGGACCTGAATGAGTTTGGTGTGGCCGCCCTGGAA
AAGACTTTCGATAACAGCACAGTGCCCCACCCAGGAAGCATCACCATCGGCGGCAGCTTGCTGC
AGAGCTCTGCGCCCGTGAACATCCCCGGCTCCTTGGGCAGCTCTGCCTCCTTCCATTCAGCATC
CCCATCCCCTCCTGTCAGCATCTCCTCGCATTTCCTGCAGCAGCCCCAGGGCCACCTGAGCCAG
TCGGAAAACACATTTTTGGGAACCTCAGCATCACATGGATCTTTGGGTCTGAACGGGATGAACA
GCAGCATCTGGGAGCACTTTGCCTCTGGAAGCTTCTCCCCGGGCACTTCCCCTGCTTTCCTATC
AGGGCCAGGGGCTGCTGAGCTGGCCCGACTTCGGCAAGAGCTAGATGAAGCCAACAGCACCATC
AAGCAGTGGGAGGAGTCCTGGAAGCAGGCCAAGCAGGCTTGTGATGCCTGGAAGAAAGAGGCGG
AGGAGGCTGGTGAGCGGGCCAGTGCAGCGGGTGCCGAGTGCGAGCTGGCCCGGGAGCAGCGGGA
TGCACTGGAGGTGCAGGTGAAGAAACTCCAGGAAGAGCTGGAGCGGCTACACGCAGGGCCCGAG
CCCCAGGCCCTGCCCGCCTTCTCTGACCTGGAGACACTCTCACTCTCCACCCTCTACTCCCTCC
AGAAGCAGCTGCGGGCCCATCTGGAACAAGTGGACAAGGCCGTGTTCCACATGCAGTCGGTGAA
ATGCCTTAAGTGTCAGGAACAGAAGCGGGCAGTGCTGCCGTGCCAACATGCTGCGCTGTGTGAG
CTCTGCGCTGAGGGCAGCGAGTGCCCCATCTGCCAGCCTGGCCGGGCCCATGCCCTCCAGTCGT
GACCCTGCAGGCCTGGCCCAGCCTGGCCCAGATCTTCTCACCTAGGACTTTTTAAAGTATATAT
ATATATATATATATATGAATATATATATATATATGTGTATGTATGTATGTATATGTATATGATT
ATGTATATGTATACATTTCTGTATGTGTGCAGGTATGCGTGGTGGTGTGGACAGTGTCTGTGTG
TATATCTGTACATAGATATAGACACACACTTTAAAAGACTTACCAAGCACTTTTTAAAAGAAGA
AACTATTTTGCAGTCCTCCCCTACCCACTCCCTGCCCTTCCTACCGCAGAGACGACATCCCCTC
TTCTCCCACTGGCCTTTTGGCAGATAATCTGTTTCTGTCTCTTTTTTAATGTAGGAACTAACTA
TTTTTAACTTCTTCCTGGGGCCTGAGCAGGGAAGGGTGGGACTGGAAGGCACTAAGGGGAGGGG
AGAAGCCCTCAGGGCAGGCCCTGCTCCCCCTACCTCCTTGCCAGGGCAAGGGTGGAGTGTGGAA
GACGTGGGTCCCCCAGAGCAGGCCTGGCCCCCAGCTGTGAGGGCCTTGGAGGCCTGAGGGGGTG
TGCTGGGGGTCTCAGTTGGCTTAGCTCCTAGGTTTACCAAATGTATAGTCCTGGGGAGAACAGT
AAGGGCTGGAGGCCAGTGCTGCAGGGCCAGCCCCACTCCCAACACCTGGGCCCTTGAAGCTCCT
CAAGGAGCAAGGCCCAGGAGTTACAGCCCTCAGGTTCCTGAGGGTCCACCCTCAGTCCTCTCCC
CCTGGACTCCCCACAAGAGCCTCCTGGCCCCCAGGGCCACCTACCAGGCTGGCACTCATTCTAT
GACCTCCCCACCCCCCCGACCACTACCAGCTGCCCCCAGCTCTCCCTGCCCCCTCCCCTCTCTG
GCAGCTAGCAGGGCAATTGGCGGGGAGGAGTGCAGACTGAGGACCAAGGGGGCCCAGGCCCTGC
CCTCCTAGCTGGAGGGGCTCCGTATGCATTCCTTGGTGCTCTCTGAGTGCAGCTGGTGTCCCGC
CCTGTTCTGGGCGGACGCCTGTGTGCGTGTGTGTGTGCCTGTCCAGTGTATATCGTGTCTTAGC
TTCCATTTTAAAAATTGTTCTGTACAGAGAGAGATGCAGCAGGGGCGGGAGGGCAGAGCGGGCG
GAGGGGAGCAGCCGCACCCCAGCACCGGGTGTCTGGGGTAGGAGCCAGAGGGCTGAGAGGGTCT
GGCCCTGGCCCAGGCTCCCCCTTGGGCTCAGCACGAAAGGGCTTTCAATGAGTTAAGTGAAAAC
TTTTTCCTTTTTTACAAAAATGCAAAAATCAACAAAGCTCCAAACCTATTGGAAATAAAATATG
AACTTGCA

hide sequence

RefSeq Acc Id:

XM_037993462 ⟹ XP_037849390

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666077	16,613,886 - 16,656,261 (-)	NCBI

RefSeq Acc Id:

XM_037993463 ⟹ XP_037849391

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666077	16,613,886 - 16,656,210 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_008009915	(Get FASTA)	NCBI Sequence Viewer
	XP_008009916	(Get FASTA)	NCBI Sequence Viewer
	XP_008009917	(Get FASTA)	NCBI Sequence Viewer
	XP_037849390	(Get FASTA)	NCBI Sequence Viewer
	XP_037849391	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000001180
	ENSCSAP00000001180.1

RefSeq Acc Id:	XP_008009917 ⟸ XM_008011726
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9QXU1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_008009915 ⟸ XM_008011724
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_008009916 ⟸ XM_008011725
- Peptide Label:	isoform X4

RefSeq Acc Id:

ENSCSAP00000001180 ⟸ ENSCSAT00000002890

RefSeq Acc Id:	XP_037849390 ⟸ XM_037993462
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_037849391 ⟸ XM_037993463
- Peptide Label:	isoform X4

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000004859	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000002890.1	UniProtKB/TrEMBL
Gene3D-CATH	Zinc finger, CCCH-type	UniProtKB/TrEMBL
InterPro	Unkempt-like	UniProtKB/TrEMBL
	Unkempt_Znf	UniProtKB/TrEMBL
	Znf_CCCH	UniProtKB/TrEMBL
	Znf_CCCH_sf	UniProtKB/TrEMBL
NCBI Gene	UNK	ENTREZGENE
PANTHER	PTHR14493	UniProtKB/TrEMBL
	RING FINGER PROTEIN UNKEMPT	UniProtKB/TrEMBL
Pfam	zf-CCCH	UniProtKB/TrEMBL
	zf_CCCH_5	UniProtKB/TrEMBL
PROSITE	ZF_C3H1	UniProtKB/TrEMBL
SMART	ZnF_C3H1	UniProtKB/TrEMBL
Superfamily-SCOP	SSF90229	UniProtKB/TrEMBL
UniProt	A0A0D9QXU1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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