Ttll4 (tubulin tyrosine ligase-like family, member 4) - Rat Genome Database

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Gene: Ttll4 (tubulin tyrosine ligase-like family, member 4) Mus musculus
Analyze
Symbol: Ttll4
Name: tubulin tyrosine ligase-like family, member 4
RGD ID: 1550532
MGI Page MGI
Description: Enables tubulin binding activity and tubulin-glutamic acid ligase activity. Acts upstream of or within regulation of blastocyst development. Located in 9+0 non-motile cilium and ciliary basal body. Is expressed in 1-cell stage embryo; 8-cell stage embryo; and blastocyst. Orthologous to human TTLL4 (tubulin tyrosine ligase like 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4632407P03Rik; AI451681; mKIAA0173; polyglutamylase; tubulin monoglutamylase TTLL4; tubulin polyglutamylase TTLL4; tubulin--tyrosine ligase-like protein 4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39174,700,804 - 74,740,991 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl174,700,904 - 74,742,889 (+)EnsemblGRCm39 Ensembl
GRCm38174,661,645 - 74,701,832 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl174,661,745 - 74,703,730 (+)EnsemblGRCm38mm10GRCm38
MGSCv37174,708,328 - 74,744,547 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36174,594,961 - 74,631,180 (+)NCBIMGSCv36mm8
Celera175,216,789 - 75,252,776 (+)NCBICelera
Cytogenetic Map1C4NCBI
cM Map138.54NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10512203   PMID:11042159   PMID:11076861   PMID:11544199   PMID:12477932   PMID:14610273   PMID:14621295   PMID:15489334   PMID:15840001   PMID:16141072   PMID:16141073  
PMID:17499049   PMID:18799693   PMID:20530212   PMID:21074048   PMID:21267068   PMID:21677750   PMID:21873635   PMID:23897886   PMID:26829768   PMID:28378742   PMID:28794449   PMID:29593216  
PMID:30973865   PMID:34995116   PMID:35404950   PMID:37890489   PMID:38355793  


Genomics

Comparative Map Data
Ttll4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39174,700,804 - 74,740,991 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl174,700,904 - 74,742,889 (+)EnsemblGRCm39 Ensembl
GRCm38174,661,645 - 74,701,832 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl174,661,745 - 74,703,730 (+)EnsemblGRCm38mm10GRCm38
MGSCv37174,708,328 - 74,744,547 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36174,594,961 - 74,631,180 (+)NCBIMGSCv36mm8
Celera175,216,789 - 75,252,776 (+)NCBICelera
Cytogenetic Map1C4NCBI
cM Map138.54NCBI
TTLL4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382218,710,835 - 218,759,724 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2218,710,835 - 218,755,416 (+)EnsemblGRCh38hg38GRCh38
GRCh372219,575,558 - 219,620,139 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362219,283,887 - 219,327,652 (+)NCBINCBI36Build 36hg18NCBI36
Build 342219,401,147 - 219,444,913NCBI
Celera2213,343,326 - 213,387,891 (+)NCBICelera
Cytogenetic Map2q35NCBI
HuRef2211,428,803 - 211,473,377 (+)NCBIHuRef
CHM1_12219,582,524 - 219,627,056 (+)NCBICHM1_1
T2T-CHM13v2.02219,197,391 - 219,244,038 (+)NCBIT2T-CHM13v2.0
Ttll4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8983,670,788 - 83,706,891 (+)NCBIGRCr8
mRatBN7.2976,221,659 - 76,258,219 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl976,221,796 - 76,251,301 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0981,925,363 - 81,961,882 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl981,940,630 - 81,954,686 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0981,687,817 - 81,724,261 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4974,011,065 - 74,025,699 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera973,794,152 - 73,830,671 (+)NCBICelera
Cytogenetic Map9q33NCBI
Ttll4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545314,679,945 - 14,720,025 (-)NCBIChiLan1.0ChiLan1.0
TTLL4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213121,339,077 - 121,388,881 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B121,356,017 - 121,403,846 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B105,968,840 - 106,016,034 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B224,563,626 - 224,610,511 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B224,563,691 - 224,610,431 (+)Ensemblpanpan1.1panPan2
TTLL4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13725,303,818 - 25,341,315 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3725,273,110 - 25,340,512 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3726,123,846 - 26,160,606 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03725,319,791 - 25,356,071 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3725,319,910 - 25,356,002 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13725,224,607 - 25,260,995 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03725,158,861 - 25,195,634 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03725,179,670 - 25,216,226 (+)NCBIUU_Cfam_GSD_1.0
Ttll4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303174,810,537 - 174,859,089 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365691,153,447 - 1,194,269 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365691,153,376 - 1,201,704 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTLL4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15120,773,185 - 120,793,194 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115120,748,537 - 120,791,825 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215133,817,235 - 133,820,673 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TTLL4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110104,612,946 - 104,656,926 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10104,613,026 - 104,656,622 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604094,745,779 - 94,790,597 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ttll4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248236,310,738 - 6,352,333 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248236,314,177 - 6,352,236 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ttll4
1181 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2672
Count of miRNA genes:848
Interacting mature miRNAs:1169
Transcripts:ENSMUST00000042125, ENSMUST00000113678, ENSMUST00000128891, ENSMUST00000129890, ENSMUST00000140591, ENSMUST00000141119, ENSMUST00000143790, ENSMUST00000143925, ENSMUST00000145132, ENSMUST00000153636, ENSMUST00000155753
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
1301166Thypr2_mthymocyte proliferative response 2 (mouse)Not determined14127312475273271Mouse
18182931Metl1_mmetabolite locus 1, pyridoxate (mouse)14127539975275399Mouse
4141032Wbcc1_mwhite blood cell count 1 (mouse)Not determined4225966776259667Mouse
1301714Vertcling_mvertical clinging (mouse)Not determined14293803176938167Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1301670Ssta1_msusceptibility to Salmonella typhimurium antigens 1 (mouse)Not determined14594675579946882Mouse
1301616Yaa2_mY-linked autoimmune acceleration 2 (mouse)Not determined14685469080854839Mouse
1301225Sle7_msystematic lupus erythematosus susceptibility 7 (mouse)Not determined14685469080854839Mouse
1558905Gct7_mgranulosa cell tumorigenesis 7 (mouse)Not determined14734989481350013Mouse
1558822Vas1_mautoimmune vasitis resistance 1 (mouse)Not determined14888900682889210Mouse
1301211Bbaa11_mB.burgdorferi-associated arthritis 11 (mouse)Not determined14888900682889210Mouse
1301430Cdcs2_mcytokine deficiency colitis susceptibility 2 (mouse)Not determined14889234582892485Mouse
10043965Obq24_mobesity QTL 24 (mouse)Not determined15089021684890216Mouse
4141305Tgq9_mtriglyceride QTL 9 (mouse)Not determined5142160585421605Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1357741Nidd5k_mNidd5 on KK-A<y> (mouse)Not determined15597494889975057Mouse
4142467Wbcq1_mwhite blood cell quantitative locus 1 (mouse)Not determined15626621490266360Mouse
1357505Vtbt1_mvertebral trabecular bone trait 1 (mouse)Not determined15626621490266360Mouse
1558717Ses1a_msalmonella enteritidis susceptibility 1a (mouse)Not determined15672692290727077Mouse
1301933Insq6_minsulin QTL 6 (mouse)Not determined15672692290727077Mouse
14746998Mancz1_mmandible centroid size 1 (mouse)15794135191941351Mouse
14747009Manh49_mmandible shape 49 (mouse)15794135191941351Mouse
1300746Skl1_mskeletal size (tail length) 1 (mouse)Not determined15799197791992080Mouse
1357679Egrm1_mearly growth rate, maternal effect 1 (mouse)Not determined15799197791992080Mouse
1301162Skull1_mskull morphology 1 (mouse)Not determined15799197791992080Mouse
1301667Lxw5_mlupus BXSB x NZW 5 (mouse)Not determined15854919192549443Mouse
1301444Alcw5_malcohol withdrawal 5 (mouse)Not determined15854919192549443Mouse
1301748Abbp1_mA/J and C57BL/6 blood pressure 1 (mouse)Not determined162946755120529678Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
1302119Cia15_mcollagen induced arthritis 15 (mouse)Not determined16588900688496101Mouse
27095918Ulnl1_mulna length 1, 5 week (mouse)167339159129727737Mouse
4141625Emo4_memotionality 4 (mouse)Not determined6807134586235027Mouse
1302146Cocrb1_mcocaine related behavior 1 (mouse)Not determined170133533104139557Mouse
4141393Mol2_mmodifier of LPS-response 2 (mouse)Not determined7162467978183144Mouse
1300976Bmd19_mbone mineral density 19 (mouse)Not determined173266214108838414Mouse
4142394Mssq1_mmandible size and shape QTL 1 (mouse)Not determined73615692107615830Mouse
1301304Hrq3_mheart rate quantitative locus 3 (mouse)Not determined173615692107615830Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
14697705Stsl3b_mSalmonella typhimurium susceptibility locus 3b (mouse)17413915981777715Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74516235148715579Mouse

Markers in Region
41.MMHAP75FRF11.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38174,688,152 - 74,688,320UniSTSGRCm38
MGSCv37174,734,726 - 74,734,894UniSTSGRCm37
Celera175,242,955 - 75,243,123UniSTS
Cytogenetic Map1C3UniSTS
Whitehead_YAC1 UniSTS
MHAa64b12.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38174,671,541 - 74,671,718UniSTSGRCm38
MGSCv37174,718,115 - 74,718,292UniSTSGRCm37
Celera175,226,574 - 75,226,751UniSTS
Cytogenetic Map1C3UniSTS
Whitehead_YAC1 UniSTS
AI451681  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38174,701,582 - 74,701,709UniSTSGRCm38
MGSCv37174,748,156 - 74,748,283UniSTSGRCm37
Celera175,256,308 - 75,256,435UniSTS
Cytogenetic Map1C3UniSTS
Whitehead/MRC_RH11093.33UniSTS
UniSTS:234156  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38174,676,647 - 74,676,954UniSTSGRCm38
MGSCv37174,723,221 - 74,723,528UniSTSGRCm37
Celera175,231,684 - 75,231,991UniSTS
Cytogenetic Map1C3UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000042125   ⟹   ENSMUSP00000037406
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,700,904 - 74,742,889 (+)Ensembl
GRCm38.p6 Ensembl174,661,745 - 74,703,730 (+)Ensembl
RefSeq Acc Id: ENSMUST00000113678   ⟹   ENSMUSP00000109308
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,718,057 - 74,737,136 (+)Ensembl
GRCm38.p6 Ensembl174,678,898 - 74,697,977 (+)Ensembl
RefSeq Acc Id: ENSMUST00000128891
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,734,372 - 74,739,037 (+)Ensembl
GRCm38.p6 Ensembl174,695,213 - 74,699,878 (+)Ensembl
RefSeq Acc Id: ENSMUST00000129890   ⟹   ENSMUSP00000119964
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,700,976 - 74,720,950 (+)Ensembl
GRCm38.p6 Ensembl174,661,817 - 74,681,791 (+)Ensembl
RefSeq Acc Id: ENSMUST00000140591
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,725,115 - 74,727,809 (+)Ensembl
GRCm38.p6 Ensembl174,685,956 - 74,688,650 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141119   ⟹   ENSMUSP00000116733
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,700,909 - 74,724,516 (+)Ensembl
GRCm38.p6 Ensembl174,661,750 - 74,685,357 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143790
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,734,893 - 74,737,000 (+)Ensembl
GRCm38.p6 Ensembl174,695,734 - 74,697,841 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143925
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,724,485 - 74,727,787 (+)Ensembl
GRCm38.p6 Ensembl174,685,326 - 74,688,628 (+)Ensembl
RefSeq Acc Id: ENSMUST00000145132
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,729,232 - 74,740,991 (+)Ensembl
GRCm38.p6 Ensembl174,690,073 - 74,701,832 (+)Ensembl
RefSeq Acc Id: ENSMUST00000153636
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,700,976 - 74,712,414 (+)Ensembl
GRCm38.p6 Ensembl174,661,817 - 74,673,255 (+)Ensembl
RefSeq Acc Id: ENSMUST00000155753
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,728,582 - 74,729,837 (+)Ensembl
GRCm38.p6 Ensembl174,689,423 - 74,690,678 (+)Ensembl
RefSeq Acc Id: NM_001014974   ⟹   NP_001014974
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39174,700,861 - 74,740,991 (+)NCBI
GRCm38174,661,702 - 74,701,832 (+)NCBI
MGSCv37174,708,328 - 74,744,547 (+)RGD
Celera175,216,789 - 75,252,776 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006496224   ⟹   XP_006496287
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39174,700,804 - 74,740,991 (+)NCBI
GRCm38174,661,645 - 74,701,832 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006496225   ⟹   XP_006496288
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39174,700,804 - 74,740,991 (+)NCBI
GRCm38174,661,645 - 74,701,832 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001014974   ⟸   NM_001014974
- UniProtKB: A4Q9E6 (UniProtKB/Swiss-Prot),   Q5U4C4 (UniProtKB/Swiss-Prot),   Q80UG8 (UniProtKB/Swiss-Prot),   D3YY08 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006496288   ⟸   XM_006496225
- Peptide Label: isoform X1
- UniProtKB: A4Q9E6 (UniProtKB/Swiss-Prot),   Q5U4C4 (UniProtKB/Swiss-Prot),   Q80UG8 (UniProtKB/Swiss-Prot),   D3YY08 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006496287   ⟸   XM_006496224
- Peptide Label: isoform X1
- UniProtKB: A4Q9E6 (UniProtKB/Swiss-Prot),   Q5U4C4 (UniProtKB/Swiss-Prot),   Q80UG8 (UniProtKB/Swiss-Prot),   D3YY08 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000109308   ⟸   ENSMUST00000113678
RefSeq Acc Id: ENSMUSP00000037406   ⟸   ENSMUST00000042125
RefSeq Acc Id: ENSMUSP00000119964   ⟸   ENSMUST00000129890
RefSeq Acc Id: ENSMUSP00000116733   ⟸   ENSMUST00000141119
Protein Domains
TTL

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q80UG8-F1-model_v2 AlphaFold Q80UG8 1-1193 view protein structure

Promoters
RGD ID:6874094
Promoter ID:EPDNEW_M498
Type:initiation region
Name:Ttll4_1
Description:Mus musculus tubulin tyrosine ligase-like family, member 4 ,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38174,661,748 - 74,661,808EPDNEW
RGD ID:6818656
Promoter ID:MM_KWN:1190
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000051630,   OTTMUST00000051632,   OTTMUST00000051633,   OTTMUST00000051634
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36174,707,966 - 74,708,517 (+)MPROMDB
RGD ID:6818657
Promoter ID:MM_KWN:1191
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung
Transcripts:ENSMUST00000113678
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36174,725,471 - 74,725,971 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914784 AgrOrtholog
Ensembl Genes ENSMUSG00000033257 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000042125 ENTREZGENE
  ENSMUST00000042125.15 UniProtKB/Swiss-Prot
  ENSMUST00000113678 ENTREZGENE
  ENSMUST00000113678.2 UniProtKB/TrEMBL
  ENSMUST00000129890.8 UniProtKB/TrEMBL
  ENSMUST00000141119.8 UniProtKB/TrEMBL
Gene3D-CATH ATP-grasp fold, B domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro TTL/TTLL_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:67534 UniProtKB/Swiss-Prot
MGD MGI:1914784 ENTREZGENE
NCBI Gene 67534 ENTREZGENE
PANTHER TUBULIN POLYGLUTAMYLASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TUBULIN POLYGLUTAMYLASE TTLL4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam TTL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ttll4 PhenoGen
PROSITE TTL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Glutathione synthetase ATP-binding domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A4Q9E6 ENTREZGENE
  D3YY08 ENTREZGENE, UniProtKB/TrEMBL
  D3Z402_MOUSE UniProtKB/TrEMBL
  D3Z7H1_MOUSE UniProtKB/TrEMBL
  Q5U4C4 ENTREZGENE
  Q80UG8 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A4Q9E6 UniProtKB/Swiss-Prot
  Q5U4C4 UniProtKB/Swiss-Prot