Wdr19 (WD repeat domain 19) - Rat Genome Database

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Gene: Wdr19 (WD repeat domain 19) Mus musculus
Analyze
Symbol: Wdr19
Name: WD repeat domain 19
RGD ID: 1549987
MGI Page MGI
Description: Acts upstream of or within several processes, including chordate embryonic development; embryonic organ development; and myotome development. Located in motile cilium and photoreceptor connecting cilium. Part of intraciliary transport particle A. Is expressed in several structures, including alimentary system; genitourinary system; hemolymphoid system gland; liver; and lung. Used to study ciliopathy. Human ortholog(s) of this gene implicated in several diseases, including Caroli disease; Senior-Loken syndrome; asphyxiating thoracic dystrophy 5; cranioectodermal dysplasia 4; and nephronophthisis 13. Orthologous to human WDR19 (WD repeat domain 19).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C330027H04Rik; D330023L08Rik; DYF2; Ift14; Ift144; intraflagellar transport 144 homolog; mKIAA1638; PWDMP; WD repeat membrane protein PWDMP; WD repeat-containing protein 19
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39565,357,039 - 65,417,758 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl565,357,039 - 65,417,758 (+)EnsemblGRCm39 Ensembl
GRCm38565,199,696 - 65,260,415 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl565,199,696 - 65,260,415 (+)EnsemblGRCm38mm10GRCm38
MGSCv37565,590,935 - 65,651,654 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36565,478,847 - 65,539,550 (+)NCBIMGSCv36mm8
Celera562,476,346 - 62,537,628 (+)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map533.58NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Mutations in mouse Ift144 model the craniofacial, limb and rib defects in skeletal ciliopathies. Ashe A, etal., Hum Mol Genet. 2012 Apr 15;21(8):1808-23. doi: 10.1093/hmg/ddr613. Epub 2012 Jan 6.
2. Ciliopathies with skeletal anomalies and renal insufficiency due to mutations in the IFT-A gene WDR19. Bredrup C, etal., Am J Hum Genet. 2011 Nov 11;89(5):634-43. doi: 10.1016/j.ajhg.2011.10.001. Epub 2011 Oct 20.
3. WDR19: an ancient, retrograde, intraflagellar ciliary protein is mutated in autosomal recessive retinitis pigmentosa and in Senior-Loken syndrome. Coussa RG, etal., Clin Genet. 2013 Aug;84(2):150-9. doi: 10.1111/cge.12196.
4. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
5. Nephronophthisis 13: implications of its association with Caroli disease and altered intracellular localization of WDR19 in the kidney. Lee JM, etal., Pediatr Nephrol. 2015 Sep;30(9):1451-8. doi: 10.1007/s00467-015-3068-8. Epub 2015 Mar 1.
6. MGDs mouse GO annotations MGD data from the GO Consortium
7. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
9. Hepatorenal fibrocystic diseases in children. Park E, etal., Pediatr Nephrol. 2016 Jan;31(1):113-9. doi: 10.1007/s00467-015-3185-4. Epub 2015 Aug 11.
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12906858   PMID:14621295   PMID:15489334   PMID:15890782   PMID:16141072   PMID:16141073   PMID:16957054  
PMID:19208653   PMID:20889716   PMID:21267068   PMID:21873635   PMID:22689656   PMID:22922713   PMID:25224227   PMID:27806291   PMID:32317081   PMID:32325033   PMID:34161765   PMID:35007346  


Genomics

Comparative Map Data
Wdr19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39565,357,039 - 65,417,758 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl565,357,039 - 65,417,758 (+)EnsemblGRCm39 Ensembl
GRCm38565,199,696 - 65,260,415 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl565,199,696 - 65,260,415 (+)EnsemblGRCm38mm10GRCm38
MGSCv37565,590,935 - 65,651,654 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36565,478,847 - 65,539,550 (+)NCBIMGSCv36mm8
Celera562,476,346 - 62,537,628 (+)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map533.58NCBI
WDR19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38439,182,529 - 39,285,810 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl439,182,504 - 39,285,810 (+)EnsemblGRCh38hg38GRCh38
GRCh37439,184,149 - 39,287,430 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36438,860,419 - 38,963,825 (+)NCBINCBI36Build 36hg18NCBI36
Build 34439,006,589 - 39,109,995NCBI
Celera439,621,888 - 39,725,263 (+)NCBICelera
Cytogenetic Map4p14NCBI
HuRef438,508,923 - 38,612,720 (+)NCBIHuRef
CHM1_1439,183,560 - 39,287,052 (+)NCBICHM1_1
T2T-CHM13v2.0439,152,167 - 39,255,444 (+)NCBIT2T-CHM13v2.0
Wdr19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81443,396,130 - 43,460,012 (-)NCBIGRCr8
mRatBN7.21443,042,474 - 43,106,337 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1443,042,478 - 43,106,288 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1443,398,120 - 43,460,461 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01444,698,061 - 44,760,412 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01443,178,194 - 43,240,550 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01444,705,012 - 44,767,120 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1444,705,012 - 44,767,120 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01444,519,192 - 44,580,950 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41445,744,198 - 45,807,441 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11445,744,874 - 45,809,905 (-)NCBI
Celera1442,187,689 - 42,251,374 (-)NCBICelera
Cytogenetic Map14p11NCBI
Wdr19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554438,053,847 - 8,123,110 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554438,053,847 - 8,122,918 (-)NCBIChiLan1.0ChiLan1.0
WDR19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2339,371,162 - 39,477,207 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1439,563,751 - 39,669,617 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0433,511,283 - 33,616,946 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1439,365,204 - 39,470,074 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl439,365,276 - 39,462,903 (+)Ensemblpanpan1.1panPan2
WDR19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1373,115,560 - 73,213,823 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl373,137,250 - 73,221,512 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha375,617,214 - 75,774,265 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0373,844,096 - 74,001,187 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl373,908,855 - 74,001,228 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1373,110,186 - 73,267,232 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0373,302,684 - 73,413,870 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0373,643,183 - 73,800,247 (-)NCBIUU_Cfam_GSD_1.0
Wdr19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528539,361,717 - 39,434,642 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364826,863,571 - 6,937,979 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364826,863,592 - 6,937,810 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl830,463,862 - 30,553,703 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1830,453,969 - 30,553,699 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2832,078,753 - 32,168,583 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WDR19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12711,019,897 - 11,113,760 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2711,018,827 - 11,113,666 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604757,431,811 - 57,525,579 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdr19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248407,624,687 - 7,699,997 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248407,624,744 - 7,702,283 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Wdr19
2390 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:136
Count of miRNA genes:129
Interacting mature miRNAs:134
Transcripts:ENSMUST00000041892
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
11353827Hplq1_mhot plate latency 1 (mouse)53157045865570458Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined32133234100777931Mouse
10043995Hbnr9_mHeligmosomoides bakeri nematode resistance 9 (mouse)Not determined53348866767488876Mouse
1301845Lxw4_mlupus BXSB x NZW 4 (mouse)Not determined53569446269694594Mouse
11049561Lmr24e_mleishmaniasis resistance 24e (mouse)53569446269694594Mouse
11049559Lmr24c_mleishmaniasis resistance 24c (mouse)53569446269694594Mouse
11049558Lmr24b_mleishmaniasis resistance 24b (mouse)53569446269694594Mouse
1301223Hdlq7_mHDL QTL 7 (mouse)Not determined53585456869854714Mouse
13464252Ahl10_mage related hearing loss, early onset 10 (mouse)53585456869854714Mouse
4141647Hrvhf1_mheart rate variability, high frequency 1 (mouse)Not determined3643342370433423Mouse
1301170Lith13_mlithogenic gene 13 (mouse)Not determined53649448670494598Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
13464246Ahl11_mage related hearing loss, early onset 11 (mouse)53764377771643896Mouse
1300951Gbvq1_mgallstone bladder volume QTL 1 (mouse)Not determined53811168172111798Mouse
13464245Ahl12_mage related hearing loss, early onset 12 (mouse)53811168172111798Mouse
1301698Pcfm4_mperiosteal circumference and femur length 4 (mouse)Not determined54458584378585965Mouse
13207584Mwmlpt4_mMorris water maze latency to platform, training, 4 (mouse)54632260680322606Mouse
13207588Mwmlpa4_mMorris water maze latency to platform, all, 4 (mouse)54632260680322606Mouse
14746981Manh57_mmandible shape 57 (mouse)54716974281169742Mouse
11041665Lmr24_mleishmaniasis resistance 24 (mouse)552694462107321041Mouse
11041899Lmr24a_mleishmaniasis resistance 24a (mouse)552694462107321041Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
1301243Bmd2_mbone mineral density 2 (mouse)Not determined555388334100455525Mouse
4142317Rgcs1_mretinal ganglion cell susceptible 1 (mouse)Not determined55388334108762627Mouse
13464248Ahl13_mage related hearing loss, early onset 13 (mouse)55564587489645995Mouse
10043962Obq27_mobesity QTL 27 (mouse)Not determined55628565590285655Mouse
10044005Ahl7_mage related hearing loss 7 (mouse)Not determined55833050292330641Mouse
11040591Lmr3c_mleishmaniasis resistance 3c (mouse)55960280193602980Mouse
11040592Lmr3d_mleishmaniasis resistance 3d (mouse)55960280193602980Mouse
11040589Lmr3a_mleishmaniasis resistance 3a (mouse)55960280193602980Mouse
11040590Lmr3b_mleishmaniasis resistance 3b (mouse)55960280193602980Mouse
1301843Listr1_mlisteriosis resistance 1 (mouse)Not determined56024608194246203Mouse
13464247Ahl14_mage related hearing loss, early onset 14 (mouse)56040306294403160Mouse
11252124Modvl6_mmodifier of vacuolated lens 6 (mouse)56265056896650688Mouse
4142428Modvl1_mmodifier of vacuolated lens 1 (mouse)Not determined6265056896650688Mouse
1301010ahl2_mage related hearing loss 2 (mouse)Not determined56265056896650688Mouse
13464250Ahl15_mage related hearing loss, early onset 15 (mouse)56265056896650688Mouse
10045972Tir5_mtrypanosome infection response 5 (mouse)Not determined563705442104387065Mouse
11049560Lmr24d_mleishmaniasis resistance 24d (mouse)56437487798374996Mouse

Markers in Region
UniSTS:235183  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38565,260,001 - 65,260,281UniSTSGRCm38
MGSCv37565,651,240 - 65,651,520UniSTSGRCm37
Celera562,537,214 - 62,537,494UniSTS
Cytogenetic Map5C3.1UniSTS
UniSTS:235184  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38565,259,390 - 65,259,612UniSTSGRCm38
MGSCv37565,650,629 - 65,650,851UniSTSGRCm37
Celera562,536,603 - 62,536,825UniSTS
Cytogenetic Map5C3.1UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000041892   ⟹   ENSMUSP00000038098
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl565,357,041 - 65,417,758 (+)Ensembl
GRCm38.p6 Ensembl565,199,698 - 65,260,415 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203359
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl565,359,958 - 65,417,753 (+)Ensembl
GRCm38.p6 Ensembl565,202,615 - 65,260,410 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203554   ⟹   ENSMUSP00000144826
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl565,413,768 - 65,417,752 (+)Ensembl
GRCm38.p6 Ensembl565,256,425 - 65,260,409 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203653   ⟹   ENSMUSP00000144866
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl565,357,039 - 65,417,749 (+)Ensembl
GRCm38.p6 Ensembl565,199,696 - 65,260,406 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203676
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl565,357,074 - 65,388,597 (+)Ensembl
GRCm38.p6 Ensembl565,199,731 - 65,231,254 (+)Ensembl
RefSeq Acc Id: ENSMUST00000204375
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl565,357,083 - 65,381,886 (+)Ensembl
GRCm38.p6 Ensembl565,199,740 - 65,224,543 (+)Ensembl
RefSeq Acc Id: ENSMUST00000204582
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl565,357,043 - 65,362,657 (+)Ensembl
GRCm38.p6 Ensembl565,199,700 - 65,205,314 (+)Ensembl
RefSeq Acc Id: ENSMUST00000204647
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl565,357,060 - 65,401,929 (+)Ensembl
GRCm38.p6 Ensembl565,199,717 - 65,244,586 (+)Ensembl
RefSeq Acc Id: NM_001359879   ⟹   NP_001346808
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39565,357,039 - 65,416,746 (+)NCBI
GRCm38565,199,696 - 65,259,403 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001359880   ⟹   NP_001346809
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39565,357,039 - 65,401,929 (+)NCBI
GRCm38565,199,696 - 65,244,586 (+)NCBI
Sequence:
RefSeq Acc Id: NM_153391   ⟹   NP_700440
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39565,357,039 - 65,417,758 (+)NCBI
GRCm38565,199,696 - 65,260,415 (+)NCBI
MGSCv37565,590,935 - 65,651,654 (+)RGD
Celera562,476,346 - 62,537,628 (+)RGD
cM Map5 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_700440   ⟸   NM_153391
- Peptide Label: isoform a
- UniProtKB: Q8C794 (UniProtKB/Swiss-Prot),   Q80VQ6 (UniProtKB/Swiss-Prot),   Q6ZPK8 (UniProtKB/Swiss-Prot),   Q8K3R5 (UniProtKB/Swiss-Prot),   Q3UGF1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001346808   ⟸   NM_001359879
- Peptide Label: isoform a
- UniProtKB: Q8C794 (UniProtKB/Swiss-Prot),   Q80VQ6 (UniProtKB/Swiss-Prot),   Q6ZPK8 (UniProtKB/Swiss-Prot),   Q3UGF1 (UniProtKB/Swiss-Prot),   Q8K3R5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001346809   ⟸   NM_001359880
- Peptide Label: isoform a
RefSeq Acc Id: ENSMUSP00000144826   ⟸   ENSMUST00000203554
RefSeq Acc Id: ENSMUSP00000144866   ⟸   ENSMUST00000203653
RefSeq Acc Id: ENSMUSP00000038098   ⟸   ENSMUST00000041892
Protein Domains
Anaphase-promoting complex subunit 4-like WD40

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3UGF1-F1-model_v2 AlphaFold Q3UGF1 1-1341 view protein structure

Promoters
RGD ID:6886760
Promoter ID:EPDNEW_M6831
Type:multiple initiation site
Name:Wdr19_1
Description:Mus musculus WD repeat domain 19 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38565,199,717 - 65,199,777EPDNEW
RGD ID:6838633
Promoter ID:MM_KWN:42374
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_153391,   UC008XND.1,   UC008XNE.1,   UC008XNF.1,   UC008XNG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36565,590,589 - 65,591,089 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2443231 AgrOrtholog
Ensembl Genes ENSMUSG00000037890 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000041892 ENTREZGENE
  ENSMUST00000041892.13 UniProtKB/Swiss-Prot
  ENSMUST00000203554.2 UniProtKB/TrEMBL
  ENSMUST00000203653 ENTREZGENE
  ENSMUST00000203653.3 UniProtKB/Swiss-Prot
  ENSMUST00000204647 ENTREZGENE
Gene3D-CATH 1.25.40.470 UniProtKB/Swiss-Prot
  2.130.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Apc4-like_WD40_dom UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/Swiss-Prot
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WDR19/dyf-2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WDR19_WD40_rpt UniProtKB/Swiss-Prot
KEGG Report mmu:213081 UniProtKB/Swiss-Prot
MGD MGI:2443231 ENTREZGENE
NCBI Gene 213081 ENTREZGENE
PANTHER PTHR14920 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD REPEAT-CONTAINING PROTEIN 19 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ANAPC4_WD40 UniProtKB/TrEMBL
  WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_3 UniProtKB/Swiss-Prot
PhenoGen Wdr19 PhenoGen
PROSITE WD_REPEATS_REGION UniProtKB/Swiss-Prot
SMART WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP DPP6 N-terminal domain-like UniProtKB/Swiss-Prot
  SSF48452 UniProtKB/Swiss-Prot
  Tricorn protease domain 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0N4SUU5_MOUSE UniProtKB/TrEMBL
  Q3UGF1 ENTREZGENE
  Q6ZPK8 ENTREZGENE
  Q80VQ6 ENTREZGENE
  Q8BRP0_MOUSE UniProtKB/TrEMBL
  Q8C794 ENTREZGENE
  Q8K3R5 ENTREZGENE
  WDR19_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q6ZPK8 UniProtKB/Swiss-Prot
  Q80VQ6 UniProtKB/Swiss-Prot
  Q8C794 UniProtKB/Swiss-Prot
  Q8K3R5 UniProtKB/Swiss-Prot