WDR19 (WD repeat domain 19) - Rat Genome Database

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Gene: WDR19 (WD repeat domain 19) Sus scrofa
Analyze
Symbol: WDR19
Name: WD repeat domain 19
RGD ID: 13931933
Description: INVOLVED IN cell morphogenesis (ortholog); cilium assembly (ortholog); digestive system development (ortholog); ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); asphyxiating thoracic dystrophy 1 (ortholog); asphyxiating thoracic dystrophy 5 (ortholog); FOUND IN intraciliary transport particle A (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: WD repeat-containing protein 19
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl830,463,862 - 30,553,703 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1830,453,969 - 30,553,699 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2832,078,753 - 32,168,583 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
WDR19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl830,463,862 - 30,553,703 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1830,453,969 - 30,553,699 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2832,078,753 - 32,168,583 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WDR19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38439,182,529 - 39,285,810 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl439,182,504 - 39,285,810 (+)EnsemblGRCh38hg38GRCh38
GRCh37439,184,149 - 39,287,430 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36438,860,419 - 38,963,825 (+)NCBINCBI36Build 36hg18NCBI36
Build 34439,006,589 - 39,109,995NCBI
Celera439,621,888 - 39,725,263 (+)NCBICelera
Cytogenetic Map4p14NCBI
HuRef438,508,923 - 38,612,720 (+)NCBIHuRef
CHM1_1439,183,560 - 39,287,052 (+)NCBICHM1_1
T2T-CHM13v2.0439,152,167 - 39,255,444 (+)NCBIT2T-CHM13v2.0
Wdr19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39565,357,039 - 65,417,758 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl565,357,039 - 65,417,758 (+)EnsemblGRCm39 Ensembl
GRCm38565,199,696 - 65,260,415 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl565,199,696 - 65,260,415 (+)EnsemblGRCm38mm10GRCm38
MGSCv37565,590,935 - 65,651,654 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36565,478,847 - 65,539,550 (+)NCBIMGSCv36mm8
Celera562,476,346 - 62,537,628 (+)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map533.58NCBI
Wdr19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81443,396,130 - 43,460,012 (-)NCBIGRCr8
mRatBN7.21443,042,474 - 43,106,337 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1443,042,478 - 43,106,288 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1443,398,120 - 43,460,461 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01444,698,061 - 44,760,412 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01443,178,194 - 43,240,550 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01444,705,012 - 44,767,120 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1444,705,012 - 44,767,120 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01444,519,192 - 44,580,950 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41445,744,198 - 45,807,441 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11445,744,874 - 45,809,905 (-)NCBI
Celera1442,187,689 - 42,251,374 (-)NCBICelera
Cytogenetic Map14p11NCBI
Wdr19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554438,053,847 - 8,123,110 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554438,053,847 - 8,122,918 (-)NCBIChiLan1.0ChiLan1.0
WDR19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2339,371,162 - 39,477,207 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1439,563,751 - 39,669,617 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0433,511,283 - 33,616,946 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1439,365,204 - 39,470,074 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl439,365,276 - 39,462,903 (+)Ensemblpanpan1.1panPan2
WDR19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1373,115,560 - 73,213,823 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl373,137,250 - 73,221,512 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha375,617,214 - 75,774,265 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0373,844,096 - 74,001,187 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl373,908,855 - 74,001,228 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1373,110,186 - 73,267,232 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0373,302,684 - 73,413,870 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0373,643,183 - 73,800,247 (-)NCBIUU_Cfam_GSD_1.0
Wdr19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528539,361,717 - 39,434,642 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364826,863,571 - 6,937,979 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364826,863,592 - 6,937,810 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12711,019,897 - 11,113,760 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2711,018,827 - 11,113,666 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604757,431,811 - 57,525,579 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdr19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248407,624,687 - 7,699,997 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248407,624,744 - 7,702,283 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in WDR19
4727 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 3 4 1 2
Low 10 4 5 2 19 1 1 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000009615   ⟹   ENSSSCP00000009367
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl830,463,862 - 30,553,703 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000027462   ⟹   ENSSSCP00000025118
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl830,463,862 - 30,553,703 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000045695   ⟹   ENSSSCP00000042321
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl830,463,928 - 30,553,696 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000070333   ⟹   ENSSSCP00000063238
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl830,463,900 - 30,553,694 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000073411   ⟹   ENSSSCP00000069332
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl830,466,118 - 30,489,088 (+)Ensembl
RefSeq Acc Id: XM_021101109   ⟹   XP_020956768
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1830,464,034 - 30,553,699 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021101110   ⟹   XP_020956769
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1830,453,969 - 30,553,699 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021101111   ⟹   XP_020956770
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1830,463,795 - 30,553,699 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021101112   ⟹   XP_020956771
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1830,463,928 - 30,553,699 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020956769   ⟸   XM_021101110
- Peptide Label: isoform X2
- UniProtKB: A0A287AEK9 (UniProtKB/TrEMBL),   A0A8D0YJR8 (UniProtKB/TrEMBL),   A0A4X1V4J4 (UniProtKB/TrEMBL),   A0A8D0HXC7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956770   ⟸   XM_021101111
- Peptide Label: isoform X3
- UniProtKB: A0A8D0YF77 (UniProtKB/TrEMBL),   I3LLZ8 (UniProtKB/TrEMBL),   A0A4X1V0R5 (UniProtKB/TrEMBL),   A0A8D0I1C5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956771   ⟸   XM_021101112
- Peptide Label: isoform X2
- UniProtKB: A0A287AEK9 (UniProtKB/TrEMBL),   A0A8D0YJR8 (UniProtKB/TrEMBL),   A0A4X1V4J4 (UniProtKB/TrEMBL),   A0A8D0HXC7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956768   ⟸   XM_021101109
- Peptide Label: isoform X1
- UniProtKB: A0A8D0PNI5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000069332   ⟸   ENSSSCT00000073411
RefSeq Acc Id: ENSSSCP00000009367   ⟸   ENSSSCT00000009615
RefSeq Acc Id: ENSSSCP00000063238   ⟸   ENSSSCT00000070333
RefSeq Acc Id: ENSSSCP00000042321   ⟸   ENSSSCT00000045695
RefSeq Acc Id: ENSSSCP00000025118   ⟸   ENSSSCT00000027462


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000008789 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005002191 UniProtKB/TrEMBL
  ENSSSCG00015066751 UniProtKB/TrEMBL
  ENSSSCG00025073227 UniProtKB/TrEMBL
  ENSSSCG00030022138 UniProtKB/TrEMBL
  ENSSSCG00035005691 UniProtKB/TrEMBL
  ENSSSCG00040016442 UniProtKB/TrEMBL
  ENSSSCG00045031934 UniProtKB/TrEMBL
  ENSSSCG00065038161 UniProtKB/TrEMBL
  ENSSSCG00070021544 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000027462 ENTREZGENE
  ENSSSCT00000027462.2 UniProtKB/TrEMBL
  ENSSSCT00000045695 ENTREZGENE
  ENSSSCT00000045695.3 UniProtKB/TrEMBL
  ENSSSCT00000070333.2 UniProtKB/TrEMBL
  ENSSSCT00005003272.1 UniProtKB/TrEMBL
  ENSSSCT00005003281.1 UniProtKB/TrEMBL
  ENSSSCT00005003293.1 UniProtKB/TrEMBL
  ENSSSCT00005003336.1 UniProtKB/TrEMBL
  ENSSSCT00005003366.1 UniProtKB/TrEMBL
  ENSSSCT00005003380.1 UniProtKB/TrEMBL
  ENSSSCT00015089410.1 UniProtKB/TrEMBL
  ENSSSCT00015089533.1 UniProtKB/TrEMBL
  ENSSSCT00015090096.1 UniProtKB/TrEMBL
  ENSSSCT00015090246.1 UniProtKB/TrEMBL
  ENSSSCT00015090805.1 UniProtKB/TrEMBL
  ENSSSCT00025100803.1 UniProtKB/TrEMBL
  ENSSSCT00025101066.1 UniProtKB/TrEMBL
  ENSSSCT00025101826.1 UniProtKB/TrEMBL
  ENSSSCT00025102051.1 UniProtKB/TrEMBL
  ENSSSCT00030030731.1 UniProtKB/TrEMBL
  ENSSSCT00030030752.1 UniProtKB/TrEMBL
  ENSSSCT00035007101.1 UniProtKB/TrEMBL
  ENSSSCT00035007105.1 UniProtKB/TrEMBL
  ENSSSCT00035007108.1 UniProtKB/TrEMBL
  ENSSSCT00035007119.1 UniProtKB/TrEMBL
  ENSSSCT00040022207.1 UniProtKB/TrEMBL
  ENSSSCT00045054577.1 UniProtKB/TrEMBL
  ENSSSCT00045054893.1 UniProtKB/TrEMBL
  ENSSSCT00045055176.1 UniProtKB/TrEMBL
  ENSSSCT00045055411.1 UniProtKB/TrEMBL
  ENSSSCT00045055674.1 UniProtKB/TrEMBL
  ENSSSCT00045055785.1 UniProtKB/TrEMBL
  ENSSSCT00065052169.1 UniProtKB/TrEMBL
  ENSSSCT00070042994.1 UniProtKB/TrEMBL
  ENSSSCT00070043026.1 UniProtKB/TrEMBL
  ENSSSCT00070043052.1 UniProtKB/TrEMBL
  ENSSSCT00070043074.1 UniProtKB/TrEMBL
  ENSSSCT00070043096.1 UniProtKB/TrEMBL
  ENSSSCT00070043118.1 UniProtKB/TrEMBL
  ENSSSCT00070043124.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.470 UniProtKB/TrEMBL
  2.130.10.10 UniProtKB/TrEMBL
InterPro TPR-like_helical_dom_sf UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
  WDR19/dyf-2 UniProtKB/TrEMBL
  WDR19_WD40_rpt UniProtKB/TrEMBL
NCBI Gene WDR19 ENTREZGENE
PANTHER PTHR14920 UniProtKB/TrEMBL
  WD REPEAT-CONTAINING PROTEIN 19 UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
  WD40_3 UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP DPP6 N-terminal domain-like UniProtKB/TrEMBL
  SSF48452 UniProtKB/TrEMBL
  SSF50978 UniProtKB/TrEMBL
  Tricorn protease domain 2 UniProtKB/TrEMBL
UniProt A0A287AEK9 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1V0R5 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1V4J4 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1V4J9_PIG UniProtKB/TrEMBL
  A0A5G2QG58_PIG UniProtKB/TrEMBL
  A0A8D0HXA3_PIG UniProtKB/TrEMBL
  A0A8D0HXC7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0I1C5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0I1I3_PIG UniProtKB/TrEMBL
  A0A8D0PNI5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0PNN3_PIG UniProtKB/TrEMBL
  A0A8D0PPJ8_PIG UniProtKB/TrEMBL
  A0A8D0PVX4_PIG UniProtKB/TrEMBL
  A0A8D0PWP3_PIG UniProtKB/TrEMBL
  A0A8D0TEG7_PIG UniProtKB/TrEMBL
  A0A8D0TPQ9_PIG UniProtKB/TrEMBL
  A0A8D0V1D0_PIG UniProtKB/TrEMBL
  A0A8D0W142_PIG UniProtKB/TrEMBL
  A0A8D0YF77 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0YHC7_PIG UniProtKB/TrEMBL
  A0A8D0YJR8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0YLB0_PIG UniProtKB/TrEMBL
  A0A8D1C2Y2_PIG UniProtKB/TrEMBL
  A0A8D1IUC9_PIG UniProtKB/TrEMBL
  A0A8D1IWB6_PIG UniProtKB/TrEMBL
  I3LLZ8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:94909 ENTREZGENE