MIR31 (microRNA mir-31) - Rat Genome Database

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Gene: MIR31 (microRNA mir-31) Sus scrofa
Analyze
Symbol: MIR31 (Ensembl: ssc-mir-31)
Name: microRNA mir-31 (Ensembl:ssc-mir-31)
RGD ID: 14297538
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: microRNA 31; ssc-mir-31
RGD Orthologs
Human
Mouse
Rat
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1201,198,732 - 201,198,809 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11201,198,732 - 201,198,809 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21224,397,161 - 224,397,238 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:16381832   PMID:21312241   PMID:34959084   PMID:38490113  


Genomics

Comparative Map Data
MIR31
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1201,198,732 - 201,198,809 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11201,198,732 - 201,198,809 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21224,397,161 - 224,397,238 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MIR31
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38921,512,115 - 21,512,185 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl921,512,115 - 21,512,185 (-)EnsemblGRCh38hg38GRCh38
GRCh37921,512,114 - 21,512,184 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36921,502,113 - 21,502,183 (-)NCBINCBI36Build 36hg18NCBI36
Celera921,450,429 - 21,450,499 (-)NCBICelera
Cytogenetic Map9p21.3NCBI
HuRef921,475,518 - 21,475,588 (-)NCBIHuRef
CHM1_1921,511,915 - 21,511,985 (-)NCBICHM1_1
T2T-CHM13v2.0921,526,301 - 21,526,371 (-)NCBIT2T-CHM13v2.0
Mir31
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39488,828,794 - 88,828,899 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl488,828,794 - 88,828,899 (-)EnsemblGRCm39 Ensembl
GRCm38488,910,557 - 88,910,662 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl488,910,557 - 88,910,662 (-)EnsemblGRCm38mm10GRCm38
MGSCv37488,556,461 - 88,556,566 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera487,392,515 - 87,392,620 (-)NCBICelera
Cytogenetic Map4C4NCBI
cM Map442.05NCBI
Mir31
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85108,714,849 - 108,714,954 (-)NCBIGRCr8
mRatBN7.25103,599,038 - 103,599,143 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx5106,031,567 - 106,031,672 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05107,761,170 - 107,761,275 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05107,834,100 - 107,834,205 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05107,206,515 - 107,206,620 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05111,183,081 - 111,183,186 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera5102,327,983 - 102,328,088 (-)NCBICelera
Cytogenetic Map5q32NCBI
MIR31
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11140,904,438 - 40,904,496 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1140,904,437 - 40,904,503 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1139,576,885 - 39,576,943 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01141,846,612 - 41,846,670 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11140,518,076 - 40,518,134 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01140,405,265 - 40,405,323 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01141,018,979 - 41,019,037 (-)NCBIUU_Cfam_GSD_1.0


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system nervous system renal system
High
Medium
Low 3 1 2
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000019770
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1201,198,732 - 201,198,809 (+)Ensembl
RefSeq Acc Id: NR_128414
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11201,198,732 - 201,198,809 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000018175 Ensembl, ENTREZGENE
Ensembl Transcript ENSSSCT00000019770 ENTREZGENE
miRBase MI0022127 ENTREZGENE
NCBI Gene MIR31 ENTREZGENE
RNAcentral URS00000DE5AF RNACentral
  URS00007E495B RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 MIR31  microRNA mir-31    microRNA 31  Symbol and/or name change 5135510 APPROVED