SLC25A28 (solute carrier family 25 member 28) - Rat Genome Database

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Gene: SLC25A28 (solute carrier family 25 member 28) Sus scrofa
Analyze
Symbol: SLC25A28
Name: solute carrier family 25 member 28
RGD ID: 14296259
Description: ENCODES a protein that exhibits ferrous iron transmembrane transporter activity (inferred); INVOLVED IN iron import into the mitochondrion (inferred); iron ion transport (inferred); PARTICIPATES IN iron uptake pathway; FOUND IN membrane (inferred); mitochondrial inner membrane (inferred); mitochondrial membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mitoferrin-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14110,795,307 - 110,805,570 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114110,795,304 - 110,805,631 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214120,241,473 - 120,251,800 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:30032202  


Genomics

Comparative Map Data
SLC25A28
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14110,795,307 - 110,805,570 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114110,795,304 - 110,805,631 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214120,241,473 - 120,251,800 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC25A28
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381099,610,522 - 99,659,286 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1099,610,519 - 99,622,793 (-)EnsemblGRCh38hg38GRCh38
GRCh3710101,370,279 - 101,380,196 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610101,360,265 - 101,370,211 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410101,360,271 - 101,370,090NCBI
Celera1095,107,676 - 95,117,622 (-)NCBICelera
Cytogenetic Map10q24.2NCBI
HuRef1094,997,611 - 95,007,554 (-)NCBIHuRef
CHM1_110101,652,707 - 101,662,649 (-)NCBICHM1_1
T2T-CHM13v2.010100,493,405 - 100,542,276 (-)NCBIT2T-CHM13v2.0
Slc25a28
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391943,652,240 - 43,663,320 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1943,652,240 - 43,663,320 (-)EnsemblGRCm39 Ensembl
GRCm381943,663,801 - 43,675,006 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1943,663,801 - 43,674,881 (-)EnsemblGRCm38mm10GRCm38
MGSCv371943,738,291 - 43,749,371 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361943,717,112 - 43,728,192 (-)NCBIMGSCv36mm8
Celera1944,450,345 - 44,461,383 (-)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1936.67NCBI
Slc25a28
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81252,480,106 - 252,491,365 (-)NCBIGRCr8
mRatBN7.21242,530,877 - 242,542,140 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1242,530,899 - 242,542,115 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1250,680,428 - 250,691,691 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01257,377,462 - 257,388,721 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01250,030,582 - 250,041,843 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01263,420,039 - 263,431,312 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1263,420,061 - 263,431,290 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01270,865,547 - 270,876,806 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41247,159,998 - 247,171,232 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1238,351,706 - 238,362,976 (-)NCBICelera
Cytogenetic Map1q54NCBI
Slc25a28
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555075,521,255 - 5,530,895 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555075,520,915 - 5,530,615 (-)NCBIChiLan1.0ChiLan1.0
SLC25A28
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28111,519,808 - 111,568,472 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110111,525,128 - 111,573,792 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01096,227,847 - 96,276,246 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11099,720,193 - 99,730,276 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1099,720,193 - 99,729,881 (-)Ensemblpanpan1.1panPan2
SLC25A28
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12812,533,639 - 12,543,906 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2812,716,990 - 12,727,291 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02813,000,989 - 13,011,293 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2813,001,322 - 13,010,661 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12812,547,952 - 12,558,319 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02812,579,154 - 12,589,452 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02812,720,569 - 12,730,851 (-)NCBIUU_Cfam_GSD_1.0
Slc25a28
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721334,423,107 - 34,433,817 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936636462,205 - 473,359 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936636462,303 - 472,937 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A28
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1992,669,107 - 92,679,059 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl992,668,856 - 92,679,026 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604853,665,337 - 53,675,293 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc25a28
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473711,311,772 - 11,324,821 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473711,314,907 - 11,324,823 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC25A28
180 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 1
Low 10 4 3 4 2 23 2 2 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000052453   ⟹   ENSSSCP00000031809
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14110,795,307 - 110,805,570 (-)Ensembl
RefSeq Acc Id: XM_003133165   ⟹   XP_003133213
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114110,795,304 - 110,805,631 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021072514   ⟹   XP_020928173
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114110,795,304 - 110,805,624 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003133213   ⟸   XM_003133165
- Peptide Label: isoform X1
- UniProtKB: A0A286ZJV0 (UniProtKB/TrEMBL),   A0A8D1FUV1 (UniProtKB/TrEMBL),   A0A4X1U1B2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020928173   ⟸   XM_021072514
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSSCP00000031809   ⟸   ENSSSCT00000052453


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000037536 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025048461 UniProtKB/TrEMBL
  ENSSSCG00030068770 UniProtKB/TrEMBL
  ENSSSCG00035062198 UniProtKB/TrEMBL
  ENSSSCG00040066196 UniProtKB/TrEMBL
  ENSSSCG00050053264 UniProtKB/TrEMBL
  ENSSSCG00065071352 UniProtKB/TrEMBL
  ENSSSCG00070014389 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000052453 ENTREZGENE
  ENSSSCT00000052453.2 UniProtKB/TrEMBL
  ENSSSCT00025065935.1 UniProtKB/TrEMBL
  ENSSSCT00025066029.1 UniProtKB/TrEMBL
  ENSSSCT00030096179.1 UniProtKB/TrEMBL
  ENSSSCT00030096208.1 UniProtKB/TrEMBL
  ENSSSCT00035083606.1 UniProtKB/TrEMBL
  ENSSSCT00035083618.1 UniProtKB/TrEMBL
  ENSSSCT00040090362.1 UniProtKB/TrEMBL
  ENSSSCT00040090445.1 UniProtKB/TrEMBL
  ENSSSCT00050072529.1 UniProtKB/TrEMBL
  ENSSSCT00050072540.1 UniProtKB/TrEMBL
  ENSSSCT00065098027.1 UniProtKB/TrEMBL
  ENSSSCT00065098037.1 UniProtKB/TrEMBL
  ENSSSCT00070028203.1 UniProtKB/TrEMBL
Gene3D-CATH 1.50.40.10 UniProtKB/TrEMBL
InterPro Mitochondrial_sb/sol_carrier UniProtKB/TrEMBL
  Mt_carrier_dom_sf UniProtKB/TrEMBL
KEGG Report ssc:100526017 UniProtKB/TrEMBL
NCBI Gene SLC25A28 ENTREZGENE
PANTHER MITOFERRIN-1-RELATED UniProtKB/TrEMBL
  MITOFERRIN-2 UniProtKB/TrEMBL
Pfam Mito_carr UniProtKB/TrEMBL
PROSITE SOLCAR UniProtKB/TrEMBL
Superfamily-SCOP SSF103506 UniProtKB/TrEMBL
UniProt A0A286ZJV0 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1U1B2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0SB98_PIG UniProtKB/TrEMBL
  A0A8D1FUV1 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:93005 ENTREZGENE