Slc25a28 (solute carrier family 25 member 28)

Gene: Slc25a28 (solute carrier family 25 member 28) Ictidomys tridecemlineatus

Analyze

Symbol:

Slc25a28

Name:

solute carrier family 25 member 28

RGD ID:

12472702

Description:

ENCODES a protein that exhibits ferrous iron transmembrane transporter activity (inferred); INVOLVED IN iron import into the mitochondrion (inferred); iron ion transport (inferred); PARTICIPATES IN iron uptake pathway; FOUND IN membrane (inferred); mitochondrial inner membrane (inferred); mitochondrial membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

mitoferrin-2; solute carrier family 25 member 28, transcript variant X1; solute carrier family 25 member 28, transcript variant X2; solute carrier family 25 member 28, transcript variant X3; solute carrier family 25 member 28, transcript variant X4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	34,423,107 - 34,433,817 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936636	462,205 - 473,359 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936636	462,303 - 472,937 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

iron import into the mitochondrion (IEA)

iron ion transport (IEA)

Cellular Component

membrane (IEA)

mitochondrial inner membrane (IEA)

mitochondrial membrane (IEA)

mitochondrion (IEA)

Molecular Function

ferrous iron transmembrane transporter activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

iron uptake pathway (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Slc25a28
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	34,423,107 - 34,433,817 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936636	462,205 - 473,359 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936636	462,303 - 472,937 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC25A28
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	99,610,522 - 99,659,286 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	99,610,519 - 99,622,793 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	101,370,279 - 101,380,196 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	101,360,265 - 101,370,211 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	101,360,271 - 101,370,090	NCBI
Celera	10	95,107,676 - 95,117,622 (-)	NCBI		Celera
Cytogenetic Map	10	q24.2	NCBI
HuRef	10	94,997,611 - 95,007,554 (-)	NCBI		HuRef
CHM1_1	10	101,652,707 - 101,662,649 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	100,493,405 - 100,542,276 (-)	NCBI		T2T-CHM13v2.0

Slc25a28
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	43,652,240 - 43,663,320 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	43,652,240 - 43,663,320 (-)	Ensembl		GRCm39 Ensembl
GRCm38	19	43,663,801 - 43,675,006 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	43,663,801 - 43,674,881 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	43,738,291 - 43,749,371 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	43,717,112 - 43,728,192 (-)	NCBI		MGSCv36	mm8
Celera	19	44,450,345 - 44,461,383 (-)	NCBI		Celera
Cytogenetic Map	19	C3	NCBI
cM Map	19	36.67	NCBI

Slc25a28
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	252,480,106 - 252,491,365 (-)	NCBI		GRCr8
mRatBN7.2	1	242,530,877 - 242,542,140 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	242,530,899 - 242,542,115 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	250,680,428 - 250,691,691 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	257,377,462 - 257,388,721 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	250,030,582 - 250,041,843 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	263,420,039 - 263,431,312 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	263,420,061 - 263,431,290 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	270,865,547 - 270,876,806 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	247,159,998 - 247,171,232 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	238,351,706 - 238,362,976 (-)	NCBI		Celera
Cytogenetic Map	1	q54	NCBI

Slc25a28
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955507	5,521,255 - 5,530,895 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955507	5,520,915 - 5,530,615 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC25A28
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	111,519,808 - 111,568,472 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	111,525,128 - 111,573,792 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	96,227,847 - 96,276,246 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	99,720,193 - 99,730,276 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	99,720,193 - 99,729,881 (-)	Ensembl	panpan1.1		panPan2

SLC25A28
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	12,533,639 - 12,543,906 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	12,716,990 - 12,727,291 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	13,000,989 - 13,011,293 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	13,001,322 - 13,010,661 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	12,547,952 - 12,558,319 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	12,579,154 - 12,589,452 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	12,720,569 - 12,730,851 (-)	NCBI		UU_Cfam_GSD_1.0

SLC25A28
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	110,795,307 - 110,805,570 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	110,795,304 - 110,805,631 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	120,241,473 - 120,251,800 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC25A28
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	92,669,107 - 92,679,059 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	92,668,856 - 92,679,026 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	53,665,337 - 53,675,293 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc25a28
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624737	11,311,772 - 11,324,821 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624737	11,314,907 - 11,324,823 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005335235	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013362859	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021733189	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021733190	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040272284	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040272285	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040272287	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010002273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000026428 ⟹ ENSSTOP00000015592

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936636	462,205 - 473,359 (+)	Ensembl

RefSeq Acc Id:

XM_005335235 ⟹ XP_005335292

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	34,423,218 - 34,433,817 (+)	NCBI
SpeTri2.0	NW_004936636	462,303 - 472,937 (+)	NCBI

Sequence:

show sequence

TATCCGCGGGCCAAGCGGGAGCCGGAGGCCCGGGGCTCTCTGGGCCGCGCCTGAGGCGGAGGCA
ACGGGGCCGGGGGGCGGCGGCAGTAGTGGCGGCAGCGGCGCAGGTGTGCGCCGCGGCTGGCCCG
GGTGGATGGAGTTGGAGGGGCGGAGTGCAGGCGGTGTGGCGGGGGGGCCGGCGGCTGGGCCCGG
GCGGAGCCCCGGGGAGTCTGCGCTGCTGGACGGGTGGCTGCAGCGGGGCGTGGGACGGGGGGCC
GGCGGTGGGGAGGCCGGGGCCTGCAGGCCCCCGGTACGGCAGGATCCGGACTCCGGCCCGGACT
ACGAGGCGCTGCCGGCTGGAGCCACTGTCACCACGCACATGGTGGCAGGCGCCGTGGCAGGGAT
CCTGGAGCATTGCGTGATGTACCCCATCGACTGCGTCAAGACCCGGATGCAGAGTCTACAGCCT
GACCCAGCTGCCCGTTATCGAAATGTGTTGGAGGCCCTCAGGAGGATTATAAGAACGGAGGGCC
TCTGGAGGCCCATGCGGGGGCTGAACGTCACAGCAACAGGCGCAGGCCCTGCTCACGCCCTCTA
TTTTGCCTGCTACGAAAAGTTGAAAAAGACATTGAGTGATATAATCCACCCAGGGGGCAATAGC
CATATTGCCAATGGTGCAGCCGGGTGTGTGGCAACATTACTTCATGATGCAGCCATGAATCCGG
TGGAAGTGGTCAAGCAGAGGATGCAGATGTACAACTCACCATACCACCGGGTGACAGACTGTGT
ACGGGCAGTGTGGCAAAATGAAGGGGCTGGAGCCTTTTACCGCAGCTATACCACCCAGCTAGCC
ATGAACGTTCCCTTCCAAGCCATCCACTTCATGACCTATGAATTCCTGCAGGAGCACTTTAACC
CCCAGAGACGGTACAACCCCAGCTCCCATGTCCTTTCCGGAGCCTGTGCAGGAGCTGTAGCTGC
CGCTGCCACAACCCCACTGGACGTTTGCAAAACACTGCTCAACACCCAGGAATCCCTGGCTTTG
AACTCAAACATTACAGGACACATCACAGGCATGGCTAGTGCCTTCAGGACGGTATATCAAGTAG
GCGGGGTGACCGCATACTTCCGAGGAGTGCAGGCACGAGTAATTTACCAGATCCCCTCCACGGC
CATCGCATGGTCTGTGTATGAGTTCTTCAAATACCTGATCACAAAACGGCAAGAAGAGTGGAGA
GCCGGCAAGTGAAGGAGCGCTGTGTGCAGCCAGGGGTAGACAGCACCGCTGCGGCCTGCCCCCT
CCAGCCGTGTTCTCCCTCCTGGCACACTCCAGCCTTGAGTGGAGTTGGGAGGAAGGGAGAGGGC
TCTCCCTGGGCTCTCAGTGTTGTGGCTAACACCAGTTCCCGCCAGCCTTGTTGCCTCACCACCT
CTCCTCCCAGGCCTTGGGCAAGTGCAGCAGAGCACCCCTCAGCACTTCTGTCAATCTCCATCAT
GGGCCTGGTGACCCGCTCTAGACTGTTATAGAGGGCTAAGCAGCACATTCCCCTGGTTCCTAAT
AAAAAGCCTTTAAATGAAATGGT

hide sequence

RefSeq Acc Id:

XM_013362859 ⟹ XP_013218313

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	34,423,940 - 34,433,817 (+)	NCBI
SpeTri2.0	NW_004936636	465,210 - 472,933 (+)	NCBI

Sequence:

show sequence

AGTCATGCAACATTATAGTCACGCCTCAAAATCGTACATCAAGGAAGTAATAATTTGATCTGAA
TGAAAAATATTCAGGAGTCTTCAAAAATACCAAGTCTTGTCTTTGAAGAATAATTTTCATTTGC
CATTAATGCTGGGATTTAAATGATTAGAGAGGAGACCAATATGAGTTAGTGTCCATATGTCAAA
TGCTGTTGTGCTTGCATGAAAGTAAAATTCAAATCCCAGCCTGCCCGGTTCACTTGTCACCTGG
CAGTTTTTCTTTTTACCATAATGCATGGTGGAGAGGAAAAGCAGGTCAATTTTACCACAAGACT
GGAGGCAGGTATCCATGTTGCAGTCAGGAGGGCAACCACAGTGTTTGCAAATGAAAGCTAGTGT
TGTTTCTTGGCATGCAAACCTGTGTATCCTCACTGACTTATCAGGGTCAAGTTGACTTAAAATA
TCCTTGGGAGGGACTATGGGAAGTCAACACAGCCTTGCTAGACCATGGCTATCCACCCATCTAT
TTCTGTGGTCATAATAGGGAGGTTTGGGAACCCAGATAAATCCCAGTTTCCTTTTCTAGGCCTC
AGAAGCAAGCATCAGTCTTTATCTATAGGGATAGGCTCTGCAACCCAAAGCAGTGAGAACCCTT
CTCAGAACCATCTGGCTAAGTCCCCACCTGCTTCCAAGACCCGGATGCAGAGTCTACAGCCTGA
CCCAGCTGCCCGTTATCGAAATGTGTTGGAGGCCCTCAGGAGGATTATAAGAACGGAGGGCCTC
TGGAGGCCCATGCGGGGGCTGAACGTCACAGCAACAGGCGCAGGCCCTGCTCACGCCCTCTATT
TTGCCTGCTACGAAAAGTTGAAAAAGACATTGAGTGATATAATCCACCCAGGGGGCAATAGCCA
TATTGCCAATGGTGCAGCCGGGTGTGTGGCAACATTACTTCATGATGCAGCCATGAATCCGGTG
GAAGTGGTCAAGCAGAGGATGCAGATGTACAACTCACCATACCACCGGGTGACAGACTGTGTAC
GGGCAGTGTGGCAAAATGAAGGGGCTGGAGCCTTTTACCGCAGCTATACCACCCAGCTAGCCAT
GAACGTTCCCTTCCAAGCCATCCACTTCATGACCTATGAATTCCTGCAGGAGCACTTTAACCCC
CAGAGACGGTACAACCCCAGCTCCCATGTCCTTTCCGGAGCCTGTGCAGGAGCTGTAGCTGCCG
CTGCCACAACCCCACTGGACGTTTGCAAAACACTGCTCAACACCCAGGAATCCCTGGCTTTGAA
CTCAAACATTACAGGACACATCACAGGCATGGCTAGTGCCTTCAGGACGGTATATCAAGTAGGC
GGGGTGACCGCATACTTCCGAGGAGTGCAGGCACGAGTAATTTACCAGATCCCCTCCACGGCCA
TCGCATGGTCTGTGTATGAGTTCTTCAAATACCTGATCACAAAACGGCAAGAAGAGTGGAGAGC
CGGCAAGTGAAGGAGCGCTGTGTGCAGCCAGGGGTAGACAGCACCGCTGCGGCCTGCCCCCTCC
AGCCGTGTTCTCCCTCCTGGCACACTCCAGCCTTGAGTGGAGTTGGGAGGAAGGGAGAGGGCTC
TCCCTGGGCTCTCAGTGTTGTGGCTAACACCAGTTCCCGCCAGCCTTGTTGCCTCACCACCTCT
CCTCCCAGGCCTTGGGCAAGTGCAGCAGAGCACCCCTCAGCACTTCTGTCAATCTCCATCATGG
GCCTGGTGACCCGCTCTAGACTGTTATAGAGGGCTAAGCAGCACATTCCCCTGGTTCCTAATAA
AAAGCCTTTAAATGAAA

hide sequence

RefSeq Acc Id:

XM_021733189 ⟹ XP_021588864

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	34,423,471 - 34,433,817 (+)	NCBI
SpeTri2.0	NW_004936636	462,656 - 472,933 (+)	NCBI

Sequence:

show sequence

CGCACATGGTGGCAGGCGCCGTGGCAGGGATCCTGGAGCATTGCGTGATGTACCCCATCGACTG
CGTCAAGGCACTTCACACGATTCGAACCGGTACTCCGTGCAAGCAAGGTCCGGGCTGGGAGTTG
AGCCCACTCAGGAGCCAGGACTTATTTCTAACCATCAGTGAGATCTGAATCGGGACTCATGATC
AAAAATCTGTCAGCCAAAGTCGGAGATCCCACCTGGGACTAAACAGGAATAGGGTGGGATTGGG
GATCCCGAAGCCCAGACCCGGATGCAGAGTCTACAGCCTGACCCAGCTGCCCGTTATCGAAATG
TGTTGGAGGCCCTCAGGAGGATTATAAGAACGGAGGGCCTCTGGAGGCCCATGCGGGGGCTGAA
CGTCACAGCAACAGGCGCAGGCCCTGCTCACGCCCTCTATTTTGCCTGCTACGAAAAGTTGAAA
AAGACATTGAGTGATATAATCCACCCAGGGGGCAATAGCCATATTGCCAATGGTGCAGCCGGGT
GTGTGGCAACATTACTTCATGATGCAGCCATGAATCCGGTGGAAGTGGTCAAGCAGAGGATGCA
GATGTACAACTCACCATACCACCGGGTGACAGACTGTGTACGGGCAGTGTGGCAAAATGAAGGG
GCTGGAGCCTTTTACCGCAGCTATACCACCCAGCTAGCCATGAACGTTCCCTTCCAAGCCATCC
ACTTCATGACCTATGAATTCCTGCAGGAGCACTTTAACCCCCAGAGACGGTACAACCCCAGCTC
CCATGTCCTTTCCGGAGCCTGTGCAGGAGCTGTAGCTGCCGCTGCCACAACCCCACTGGACGTT
TGCAAAACACTGCTCAACACCCAGGAATCCCTGGCTTTGAACTCAAACATTACAGGACACATCA
CAGGCATGGCTAGTGCCTTCAGGACGGTATATCAAGTAGGCGGGGTGACCGCATACTTCCGAGG
AGTGCAGGCACGAGTAATTTACCAGATCCCCTCCACGGCCATCGCATGGTCTGTGTATGAGTTC
TTCAAATACCTGATCACAAAACGGCAAGAAGAGTGGAGAGCCGGCAAGTGAAGGAGCGCTGTGT
GCAGCCAGGGGTAGACAGCACCGCTGCGGCCTGCCCCCTCCAGCCGTGTTCTCCCTCCTGGCAC
ACTCCAGCCTTGAGTGGAGTTGGGAGGAAGGGAGAGGGCTCTCCCTGGGCTCTCAGTGTTGTGG
CTAACACCAGTTCCCGCCAGCCTTGTTGCCTCACCACCTCTCCTCCCAGGCCTTGGGCAAGTGC
AGCAGAGCACCCCTCAGCACTTCTGTCAATCTCCATCATGGGCCTGGTGACCCGCTCTAGACTG
TTATAGAGGGCTAAGCAGCACATTCCCCTGGTTCCTAATAAAAAGCCTTTAAATGAAA

hide sequence

RefSeq Acc Id:

XM_021733190 ⟹ XP_021588865

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	34,430,423 - 34,433,817 (+)	NCBI
SpeTri2.0	NW_004936636	469,539 - 472,933 (+)	NCBI

Sequence:

show sequence

ACCCGGATGCAGAGTCTACAGCCTGACCCAGCTGCCCGTTATCGAAATGTGTTGGAGGCCCTCA
GGAGGATTATAAGAACGGAGGGCCTCTGGAGGCCCATGCGGGGGCTGAACGTCACAGCAACAGG
CGCAGGCCCTGCTCACGCCCTCTATTTTGCCTGCTACGAAAAGTTGAAAAAGACATTGAGTGAT
ATAATCCACCCAGGGGGCAATAGCCATATTGCCAATGGTATTGAGCCTTCATGTGCCAGTTCCC
CCATTTTCCCAACTCTTTGCACTTTGCCGCTTCAGTGCTTTCCAGAATCAGCTTGGTTTGGAGC
TGCAGCTTTGGGCTGGGGTAGGCCAGTTTATAGGGGAGGGACTTCTAAACCTGATGTTCTCAGA
CAACGGGCTGCTGCAACCCCACCCCTCCTCTGGGGCACCTCAACAAAGGGTTACAGCATCCTCC
CTTACCTACCAGCTTGACTTTTTCCTCATCTTCTCCCTGGCATCAACTTCTAATGCCTGGTGCA
GCCGGGTGTGTGGCAACATTACTTCATGATGCAGCCATGAATCCGGTGGAAGTGGTCAAGCAGA
GGATGCAGATGTACAACTCACCATACCACCGGGTGACAGACTGTGTACGGGCAGTGTGGCAAAA
TGAAGGGGCTGGAGCCTTTTACCGCAGCTATACCACCCAGCTAGCCATGAACGTTCCCTTCCAA
GCCATCCACTTCATGACCTATGAATTCCTGCAGGAGCACTTTAACCCCCAGAGACGGTACAACC
CCAGCTCCCATGTCCTTTCCGGAGCCTGTGCAGGAGCTGTAGCTGCCGCTGCCACAACCCCACT
GGACGTTTGCAAAACACTGCTCAACACCCAGGAATCCCTGGCTTTGAACTCAAACATTACAGGA
CACATCACAGGCATGGCTAGTGCCTTCAGGACGGTATATCAAGTAGGCGGGGTGACCGCATACT
TCCGAGGAGTGCAGGCACGAGTAATTTACCAGATCCCCTCCACGGCCATCGCATGGTCTGTGTA
TGAGTTCTTCAAATACCTGATCACAAAACGGCAAGAAGAGTGGAGAGCCGGCAAGTGAAGGAGC
GCTGTGTGCAGCCAGGGGTAGACAGCACCGCTGCGGCCTGCCCCCTCCAGCCGTGTTCTCCCTC
CTGGCACACTCCAGCCTTGAGTGGAGTTGGGAGGAAGGGAGAGGGCTCTCCCTGGGCTCTCAGT
GTTGTGGCTAACACCAGTTCCCGCCAGCCTTGTTGCCTCACCACCTCTCCTCCCAGGCCTTGGG
CAAGTGCAGCAGAGCACCCCTCAGCACTTCTGTCAATCTCCATCATGGGCCTGGTGACCCGCTC
TAGACTGTTATAGAGGGCTAAGCAGCACATTCCCCTGGTTCCTAATAAAAAGCCTTTAAATGAA
A

hide sequence

RefSeq Acc Id:

XM_040272284 ⟹ XP_040128218

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	34,423,938 - 34,433,817 (+)	NCBI

RefSeq Acc Id:

XM_040272285 ⟹ XP_040128219

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	34,423,107 - 34,433,817 (+)	NCBI

RefSeq Acc Id:

XM_040272287 ⟹ XP_040128221

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	34,423,408 - 34,433,817 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005335292	(Get FASTA)	NCBI Sequence Viewer
	XP_013218313	(Get FASTA)	NCBI Sequence Viewer
	XP_021588864	(Get FASTA)	NCBI Sequence Viewer
	XP_021588865	(Get FASTA)	NCBI Sequence Viewer
	XP_040128218	(Get FASTA)	NCBI Sequence Viewer
	XP_040128219	(Get FASTA)	NCBI Sequence Viewer
	XP_040128221	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000015592.1
GenBank Protein	KAG3264303	(Get FASTA)	NCBI Sequence Viewer
	KAG3264304	(Get FASTA)	NCBI Sequence Viewer
	KAG3264305	(Get FASTA)	NCBI Sequence Viewer
	KAG3264306	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005335292 ⟸ XM_005335235
- Peptide Label:	isoform X1
- UniProtKB:	I3MTZ7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MELEGRSAGGVAGGPAAGPGRSPGESALLDGWLQRGVGRGAGGGEAGACRPPVRQDPDSGPDYE ALPAGATVTTHMVAGAVAGILEHCVMYPIDCVKTRMQSLQPDPAARYRNVLEALRRIIRTEGLW RPMRGLNVTATGAGPAHALYFACYEKLKKTLSDIIHPGGNSHIANGAAGCVATLLHDAAMNPVE VVKQRMQMYNSPYHRVTDCVRAVWQNEGAGAFYRSYTTQLAMNVPFQAIHFMTYEFLQEHFNPQ RRYNPSSHVLSGACAGAVAAAATTPLDVCKTLLNTQESLALNSNITGHITGMASAFRTVYQVGG VTAYFRGVQARVIYQIPSTAIAWSVYEFFKYLITKRQEEWRAGK hide sequence

RefSeq Acc Id:

XP_013218313 ⟸ XM_013362859

- Peptide Label:

isoform X3

- Sequence:

show sequence

MAIHPSISVVIIGRFGNPDKSQFPFLGLRSKHQSLSIGIGSATQSSENPSQNHLAKSPPASKTR
MQSLQPDPAARYRNVLEALRRIIRTEGLWRPMRGLNVTATGAGPAHALYFACYEKLKKTLSDII
HPGGNSHIANGAAGCVATLLHDAAMNPVEVVKQRMQMYNSPYHRVTDCVRAVWQNEGAGAFYRS
YTTQLAMNVPFQAIHFMTYEFLQEHFNPQRRYNPSSHVLSGACAGAVAAAATTPLDVCKTLLNT
QESLALNSNITGHITGMASAFRTVYQVGGVTAYFRGVQARVIYQIPSTAIAWSVYEFFKYLITK
RQEEWRAGK

hide sequence

RefSeq Acc Id:

XP_021588864 ⟸ XM_021733189

- Peptide Label:

isoform X4

- Sequence:

show sequence

MQSLQPDPAARYRNVLEALRRIIRTEGLWRPMRGLNVTATGAGPAHALYFACYEKLKKTLSDII
HPGGNSHIANGAAGCVATLLHDAAMNPVEVVKQRMQMYNSPYHRVTDCVRAVWQNEGAGAFYRS
YTTQLAMNVPFQAIHFMTYEFLQEHFNPQRRYNPSSHVLSGACAGAVAAAATTPLDVCKTLLNT
QESLALNSNITGHITGMASAFRTVYQVGGVTAYFRGVQARVIYQIPSTAIAWSVYEFFKYLITK
RQEEWRAGK

hide sequence

RefSeq Acc Id:	XP_021588865 ⟸ XM_021733190
- Peptide Label:	isoform X5
- Sequence:	show sequence MPGAAGCVATLLHDAAMNPVEVVKQRMQMYNSPYHRVTDCVRAVWQNEGAGAFYRSYTTQLAMN VPFQAIHFMTYEFLQEHFNPQRRYNPSSHVLSGACAGAVAAAATTPLDVCKTLLNTQESLALNS NITGHITGMASAFRTVYQVGGVTAYFRGVQARVIYQIPSTAIAWSVYEFFKYLITKRQEEWRAG K hide sequence

RefSeq Acc Id:	XP_040128219 ⟸ XM_040272285
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_040128221 ⟸ XM_040272287
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_040128218 ⟸ XM_040272284
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSSTOP00000015592 ⟸ ENSSTOT00000026428

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000027786	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000026428.2	UniProtKB/TrEMBL
Gene3D-CATH	1.50.40.10	UniProtKB/TrEMBL
InterPro	Mitochondrial_sb/sol_carrier	UniProtKB/TrEMBL
	Mt_carrier_dom_sf	UniProtKB/TrEMBL
NCBI Gene	Slc25a28	ENTREZGENE
PANTHER	MITOFERRIN-1-RELATED	UniProtKB/TrEMBL
	MITOFERRIN-2	UniProtKB/TrEMBL
Pfam	Mito_carr	UniProtKB/TrEMBL
PROSITE	SOLCAR	UniProtKB/TrEMBL
Superfamily-SCOP	SSF103506	UniProtKB/TrEMBL
UniProt	I3MTZ7	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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