FDPS (farnesyl diphosphate synthase)

Gene: FDPS (farnesyl diphosphate synthase) Sus scrofa

Analyze

Symbol:

FDPS

Name:

farnesyl diphosphate synthase

RGD ID:

14288419

Description:

ENCODES a protein that exhibits geranyltranstransferase activity (ortholog); INVOLVED IN cellular response to fatty acid (ortholog); farnesyl diphosphate biosynthetic process (ortholog); male gonad development (ortholog); PARTICIPATES IN alendronate pharmacodynamics pathway; cholesterol biosynthetic pathway; cholesterol ester storage disease pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); FOUND IN mitochondrial matrix (ortholog); peroxisome (ortholog)

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

farnesyl diphosphate synthase (farnesyl pyrophosphate synthetase, dimethylallyltranstransferase, geranyltranstransferase); farnesyl pyrophosphate synthase

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	94,500,141 - 94,518,408 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	94,500,140 - 94,514,820 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	103,291,797 - 103,304,940 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Charcot-Marie-Tooth disease type 2 (ISO)

gastrointestinal stromal tumor (ISO)

immunodeficiency 42 (ISO)

MHC class II deficiency (ISO)

parathyroid carcinoma (ISO)

Porokeratosis 9, Multiple Types (ISO)

Postmenopausal Osteoporosis (ISO)

severe congenital neutropenia 3 (ISO)

severe congenital neutropenia 5 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to fatty acid (ISO)

farnesyl diphosphate biosynthetic process (IBA,IEA,ISO)

isoprenoid biosynthetic process (IEA)

male gonad development (ISO)

positive regulation of cell growth involved in cardiac muscle cell development (ISO)

positive regulation of cholesterol biosynthetic process (ISO)

response to cholesterol (ISO)

response to peptide hormone (ISO)

response to testosterone (ISO)

response to xenobiotic stimulus (ISO)

spermatogenesis (ISO)

Cellular Component

cytoplasm (IBA,IEA)

cytoplasmic vesicle (IBA)

cytosol (IEA)

mitochondrial matrix (ISO)

nucleoplasm (IEA)

peroxisome (ISO)

Molecular Function

dimethylallyltranstransferase activity (IBA,IEA)

geranyltranstransferase activity (IBA,IEA,ISO)

protein binding (ISO)

transferase activity (IEA)

transferase activity, transferring alkyl or aryl (other than methyl) groups (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

alendronate pharmacodynamics pathway (ISO)

cholesterol biosynthetic pathway (ISO)

cholesterol ester storage disease pathway (ISO)

congenital hemidysplasia with ichthyosiform erythroderma and limb defects pathway (ISO)

desmosterolosis pathway (ISO)

hypercholesterolemia pathway (ISO)

ibandronate pharmacodynamics pathway (ISO)

mevalonic aciduria pathway (ISO)

nitrogenous bisphosphonate pharmacodynamics pathway (ISO)

pamidronate pharmacodynamics pathway (ISO)

risedronate pharmacodynamics pathway (ISO)

Smith-Lemli-Opitz Syndrome pathway (ISO)

statin pharmacodynamics pathway (ISO)

Wolman disease pathway (ISO)

X-linked dominant chondrodysplasia punctata 2 pathway (ISO)

zoledronate pharmacodynamics pathway (ISO)

References

Additional References at PubMed

PMID:14681463	PMID:15679890	PMID:17145712	PMID:30032202

Genomics

Comparative Map Data

FDPS
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	94,500,141 - 94,518,408 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	94,500,140 - 94,514,820 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	103,291,797 - 103,304,940 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FDPS
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	155,308,866 - 155,320,665 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	155,308,748 - 155,320,666 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	155,278,657 - 155,290,456 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	153,545,374 - 153,557,080 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	152,092,649 - 152,103,529	NCBI
Celera	1	128,351,680 - 128,363,599 (+)	NCBI		Celera
Cytogenetic Map	1	q22	NCBI
HuRef	1	126,640,838 - 126,652,759 (+)	NCBI		HuRef
CHM1_1	1	156,673,976 - 156,685,898 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	154,447,406 - 154,459,205 (+)	NCBI		T2T-CHM13v2.0

Fdps
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	89,000,895 - 89,009,274 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	89,000,895 - 89,009,266 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	89,093,588 - 89,101,967 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	89,093,588 - 89,101,959 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	88,897,510 - 88,905,867 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	89,179,515 - 89,187,872 (-)	NCBI		MGSCv36	mm8
Celera	3	89,132,279 - 89,140,636 (-)	NCBI		Celera
Cytogenetic Map	3	F1	NCBI
cM Map	3	39.01	NCBI

Fdps
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	176,795,192 - 176,804,816 (-)	NCBI		GRCr8
mRatBN7.2	2	174,497,402 - 174,507,031 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	174,486,665 - 174,507,776 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	181,643,561 - 181,653,177 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	179,665,921 - 179,675,537 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	174,265,880 - 174,275,498 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	188,403,595 - 188,413,219 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	188,392,858 - 188,413,219 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	207,816,332 - 207,826,348 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	181,138,474 - 181,177,903 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	181,119,007 - 181,128,009 (-)	NCBI
Celera	2	168,441,483 - 168,451,110 (-)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

Fdps
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955545	1,757,418 - 1,765,028 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955545	1,757,090 - 1,765,028 (+)	NCBI	ChiLan1.0	ChiLan1.0

FDPS
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	94,523,831 - 94,535,834 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	94,255,158 - 94,267,161 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	130,653,316 - 130,665,196 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	134,258,881 - 134,270,237 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	134,258,968 - 134,270,237 (+)	Ensembl	panpan1.1		panPan2

FDPS
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	42,241,086 - 42,250,373 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	42,241,107 - 42,250,225 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	41,731,911 - 41,741,200 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	42,110,187 - 42,119,478 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	42,110,191 - 42,119,346 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	41,890,063 - 41,899,349 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	41,943,839 - 41,953,128 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	42,227,832 - 42,237,121 (-)	NCBI		UU_Cfam_GSD_1.0

Fdps
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	25,768,903 - 25,778,024 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936580	4,799,354 - 4,808,406 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FDPS
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	8,514,311 - 8,526,363 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666038	7,851,669 - 7,864,161 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fdps
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624885	943,571 - 949,528 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624885	942,998 - 949,529 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in FDPS
342 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium
Low	7	2		4		11		2	1
Below cutoff	3	1	3	1	2	12	2	1	2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001185131	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005663310	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021088556	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021088557	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021088559	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB529527	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AEMK02000022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK236486	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK351226	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK392898	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK398138	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK398787	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY609787	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU469433	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01078404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000007132 ⟹ ENSSSCP00000006940

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	4	94,500,181 - 94,513,842 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000065093 ⟹ ENSSSCP00000048368

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	4	94,500,181 - 94,514,737 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000090341 ⟹ ENSSSCP00000067990

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	4	94,500,141 - 94,518,408 (-)	Ensembl

RefSeq Acc Id:

NM_001185131 ⟹ NP_001172060

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	94,500,195 - 94,513,694 (-)	NCBI

Sequence:

show sequence

ATGCTGCCCCTGTCCCGCTGGCTGAGATCTGTGGGGCTCTTCTTGCTGCCAGCCCCCTGCTGGG
TGCCCCGGGAGAGGTGGCTGGGTCCCCTACGGCGGCCCTCCCTGGTGCACGGGTGCCCAGTCCT
GGGGGCATGGCACAGTGCTCGCTGCTGGTGCCAAGCGTGGACAGAGGAGCCTCGAGCATTTTAC
TCCTCCCTCAGAATGAACGGAGACCAGAAATTGGACGCTTATGCCCGAGAAAGGCAGGATTTCA
TCCAGCACTTCTCCCAGATCGTCAAGGTGCTGACTGAGGAGGACATCGGGCACCCAGAGATAGG
AGATGCTGTTGCCCGACTCAAGGAGGTTCTGGAGTACAATGTTGTCGGAGGCAAGTACAACCGA
GGTATCACGGTGCTGGTGGTGTTCCGGGAGCTGGTGGAGCCCAGGAAGCAGGATGCTGATAGTC
TCCAGCGGGCCCTGACCGTGGGCTGGTGTATTGAACTGCTCCAAGCCTTCTTCCTGGTGGCAGA
CGACATCGAGGACTCCTCCCTCACCCGCCGGGGCCAGACCTGCTGGTATCGGAAGCCAGGTATA
GGTTTGGATGCCATCAATGATGCTTTCCTTCTGGAAGCTTGTATCTACCGCCTGCTGAAGTTCT
ACTGCCGGGAGCAGCCCTATTACCTGAACCTGATTGAGCTCTTCTTGCAGACTTCCTACAACAC
TGAGATCGGACAGACCCTGGACCTCATCGCCGGCCCCCAGGGCAACGTGGATCTTAGCAGGTTC
ACTGAAAAGAGGTACAAGTCTATTGTCAAGTACAAGACAGCTTTCTACTCTTTCTACCTGCCCG
TGGCTGCTGCCATGTATATGGCAGGCATTGACGGGGAGAAGGAGCACGCCAATGCCAAGAAGAT
CCTGATGGAGATGGGAGAGTTCTTTCAGATTCAGGACGATTACCTCGACCTCTTTGGGGACCCC
AGCGTGACAGGCAAGATCGGCACAGACATCCAGGACAACAAGTGCAGCTGGCTGGTGGTTCAGT
GTCTGCAGCGGGCCTCTCCGGAGCAGCGCCAAATCCTGCAGGAGAACTATGGGCAGAAGGATGC
TGAGAAGGTGGCCCGGGTGAAGGCGCTGTATGAGGAGATGAATCTGCAGGCAGTGTTCCTGCAG
TACGAGGAAGACAGTTACAGCCACCTGATGGGTCTCATCGAGCAGTATGCTGCGCCCCTGCCCC
CGGCCATCTTCCTGGAGCTGGCACACAAGATCTACAAGAGAAGAAAGTAG

hide sequence

RefSeq Acc Id:

XM_005663310 ⟹ XP_005663367

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	94,500,140 - 94,514,820 (-)	NCBI

Sequence:

show sequence

CGAAAAGAGATGGAGAACTACTAGTCCCAGAGAGCTGAGCGTTGAGGAGTCCGGTTTTTAGGCA
TACCCCAGCAATTCTCTGGATCCACAACCGGCATCCAGGAACAGAGCATTTTACTCCTCCCTCA
GAATGAACGGAGACCAGAAATTGGACGCTTATGCCCGAGAAAGGCAGGATTTCATCCAGCACTT
CTCCCAGATCGTCAAGGTGCTGACTGAGGAGGACATCGGGCACCCAGAGATAGGAGATGCTGTT
GCCCGACTCAAGGAGGTTCTGGAGTACAATGTTGTCGGAGGCAAGTACAACCGAGGTATCACGG
TGCTGGTGGTGTTCCGGGAGCTGGTGGAGCCCAGGAAGCAGGATGCTGATAGTCTCCAGCGGGC
CCTGACCGTGGGCTGGTGTATTGAACTGCTCCAAGCCTTCTTCCTGGTGGCAGACGACATCGAG
GACTCCTCCCTCACCCGCCGGGGCCAGACCTGCTGGTATCGGAAGCCAGGTATAGGTTTGGATG
CCATCAATGATGCTTTCCTTCTGGAAGCTTGTATCTACCGCCTGCTGAAGTTCTACTGCCGGGA
GCAGCCCTATTACCTGAACCTGATTGAGCTCTTCTTGCAGACTTCCTACAACACTGAGATCGGA
CAGACCCTGGACCTCATCGCCGGCCCCCAGGGCAACGTGGATCTTAGCAGGTTCACTGAAAAGA
GGTACAAGTCTATTGTCAAGTACAAGACAGCTTTCTACTCTTTCTACCTGCCCGTGGCTGCTGC
CATGTATATGGCAGGCATTGACGGGGAGAAGGAGCACGCCAATGCCAAGAAGATCCTGATGGAG
ATGGGAGAGTTCTTTCAGATTCAGGACGATTACCTCGACCTCTTTGGGGACCCCAGCGTGACAG
GCAAGATCGGCACAGACATCCAGGACAACAAGTGCAGCTGGCTGGTGGTTCAGTGTCTGCAGCG
GGCCTCTCCGGAGCAGCGCCAAATCCTGCAGGAGAACTATGGGCAGAAGGATGCTGAGAAGGTG
GCCCGGGTGAAGGCGCTGTATGAGGAGATGAATCTGCAGGCAGTGTTCCTGCAGTACGAGGAAG
ACAGTTACAGCCACCTGATGGGTCTCATCGAGCAGTATGCTGCGCCCCTGCCCCCGGCCATCTT
CCTGGAGCTGGCACACAAGATCTACAAGAGAAGAAAGTAGCCCAGAGACTGAAGGTGGGAGGGG
GGGCTCTCAATAAATTACTATCTAACCTCCG

hide sequence

RefSeq Acc Id:

XM_021088556 ⟹ XP_020944215

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	94,500,140 - 94,514,736 (-)	NCBI

Sequence:

show sequence

TCCACAACCGGCATCCAGGAACAGGGAGTGCTCAGTGCCCCTTCCCTGTACCACCCCCCATGCT
GCCCCTGTCCCGCTGGCTGAGATCTGTGGGGCTCTTCTTGCTGCCAGCCCCCTGCTGGGTGCCC
CGGGAGAGGTGGCTGGGTCCCCTACGGCGGCCCTCCCTGGTGCACGGGTGCCCAGTCCTGGGGG
CATGGCACAGTGCTCGCTGCTGGTGCCAAGCGTGGACAGAGGAGCCTCGAGCATTTTACTCCTC
CCTCAGAATGAACGGAGACCAGAAATTGGACGCTTATGCCCGAGAAAGGCAGGATTTCATCCAG
CACTTCTCCCAGATCGTCAAGGTGCTGACTGAGGAGGACATCGGGCACCCAGAGATAGGAGATG
CTGTTGCCCGACTCAAGGAGGTTCTGGAGTACAATGTTGTCGGAGGCAAGTACAACCGAGGTAT
CACGGTGCTGGTGGTGTTCCGGGAGCTGGTGGAGCCCAGGAAGCAGGATGCTGATAGTCTCCAG
CGGGCCCTGACCGTGGGCTGGTGTATTGAACTGCTCCAAGCCTTCTTCCTGGTGGCAGACGACA
TCGAGGACTCCTCCCTCACCCGCCGGGGCCAGACCTGCTGGTATCGGAAGCCAGGTATAGGTTT
GGATGCCATCAATGATGCTTTCCTTCTGGAAGCTTGTATCTACCGCCTGCTGAAGTTCTACTGC
CGGGAGCAGCCCTATTACCTGAACCTGATTGAGCTCTTCTTGCAGACTTCCTACAACACTGAGA
TCGGACAGACCCTGGACCTCATCGCCGGCCCCCAGGGCAACGTGGATCTTAGCAGGTTCACTGA
AAAGAGGTACAAGTCTATTGTCAAGTACAAGACAGCTTTCTACTCTTTCTACCTGCCCGTGGCT
GCTGCCATGTATATGGCAGGCATTGACGGGGAGAAGGAGCACGCCAATGCCAAGAAGATCCTGA
TGGAGATGGGAGAGTTCTTTCAGATTCAGGTAGGAAGGCGTGAGGCGCCAGCAGCGAACAGGCT
CCGACTTTTCTTCTTGTCTCGGCGCCTCTTCATTCCTCCTTTGTCGTCTCCCCACCCACCCCAG
GACGATTACCTCGACCTCTTTGGGGACCCCAGCGTGACAGGCAAGATCGGCACAGACATCCAGG
ACAACAAGTGCAGCTGGCTGGTGGTTCAGTGTCTGCAGCGGGCCTCTCCGGAGCAGCGCCAAAT
CCTGCAGGAGAACTATGGGCAGAAGGATGCTGAGAAGGTGGCCCGGGTGAAGGCGCTGTATGAG
GAGATGAATCTGCAGGCAGTGTTCCTGCAGTACGAGGAAGACAGTTACAGCCACCTGATGGGTC
TCATCGAGCAGTATGCTGCGCCCCTGCCCCCGGCCATCTTCCTGGAGCTGGCACACAAGATCTA
CAAGAGAAGAAAGTAGCCCAGAGACTGAAGGTGGGAGGGGGGGCTCTCAATAAATTACTATCTA
ACCTCCG

hide sequence

RefSeq Acc Id:

XM_021088557 ⟹ XP_020944216

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	94,500,140 - 94,514,742 (-)	NCBI

Sequence:

show sequence

TCTGGATCCACAACCGGCATCCAGGAACAGGGAGTGCTCAGTGCCCCTTCCCTGTACCACCCCC
CATGCTGCCCCTGTCCCGCTGGCTGAGATCTGTGGGGCTCTTCTTGCTGCCAGCCCCCTGCTGG
GTGCCCCGGGAGAGGTGGCTGGGTCCCCTACGGCGGCCCTCCCTGGTGCACGGGTGCCCAGTCC
TGGGGGCATGGCACAGTGCTCGCTGCTGGTGCCAAGCGTGGACAGAGGAGCCTCGAGCATTTTA
CTCCTCCCTCAGAATGAACGGAGACCAGAAATTGGACGCTTATGCCCGAGAAAGGCAGGATTTC
ATCCAGCACTTCTCCCAGATCGTCAAGGTGCTGACTGAGGAGGACATCGGGCACCCAGAGATAG
GAGATGCTGTTGCCCGACTCAAGGAGGTTCTGGAGTACAATGTTGTCGGAGGCAAGTACAACCG
AGGTATCACGGTGCTGGTGGTGTTCCGGGAGCTGGTGGAGCCCAGGAAGCAGGATGCTGATAGT
CTCCAGCGGGCCCTGACCGTGGGCTGGTGTATTGAACTGCTCCAAGCCTTCTTCCTGGTGGCAG
ACGACATCGAGGACTCCTCCCTCACCCGCCGGGGCCAGACCTGCTGGTATCGGAAGCCAGGTAT
AGGTTTGGATGCCATCAATGATGCTTTCCTTCTGGAAGCTTGTATCTACCGCCTGCTGAAGTTC
TACTGCCGGGAGCAGCCCTATTACCTGAACCTGATTGAGCTCTTCTTGCAGACTTCCTACAACA
CTGAGATCGGACAGACCCTGGACCTCATCGCCGGCCCCCAGGGCAACGTGGATCTTAGCAGGTT
CACTGAAAAGAGGTACAAGTCTATTGTCAAGTACAAGACAGCTTTCTACTCTTTCTACCTGCCC
GTGGCTGCTGCCATGTATATGGCAGGCATTGACGGGGAGAAGGAGCACGCCAATGCCAAGAAGA
TCCTGATGGAGATGGGAGAGTTCTTTCAGATTCAGGACGATTACCTCGACCTCTTTGGGGACCC
CAGCGTGACAGGCAAGATCGGCACAGACATCCAGGACAACAAGTGCAGCTGGCTGGTGGTTCAG
TGTCTGCAGCGGGCCTCTCCGGAGCAGCGCCAAATCCTGCAGGAGAACTATGGGCAGAAGGATG
CTGAGAAGGTGGCCCGGGTGAAGGCGCTGTATGAGGAGATGAATCTGCAGGCAGTGTTCCTGCA
GTACGAGGAAGACAGTTACAGCCACCTGATGGGTCTCATCGAGCAGTATGCTGCGCCCCTGCCC
CCGGCCATCTTCCTGGAGCTGGCACACAAGATCTACAAGAGAAGAAAGTAGCCCAGAGACTGAA
GGTGGGAGGGGGGGCTCTCAATAAATTACTATCTAACCTCCG

hide sequence

RefSeq Acc Id:

XM_021088559 ⟹ XP_020944218

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	94,500,141 - 94,514,820 (-)	NCBI

Sequence:

show sequence

CGAAAAGAGATGGAGAACTACTAGTCCCAGAGAGCTGAGCGTTGAGGAGTCCGGTTTTTAGGCA
TACCCCAGCAATTCTCTGGATCCACAACCGGCATCCAGGAACAGAGCATTTTACTCCTCCCTCA
GAATGAACGGAGACCAGAAATTGGACGCTTATGCCCGAGAAAGGCAGGATTTCATCCAGCACTT
CTCCCAGATCGTCAAGGTGCTGACTGAGGAGGACATCGGGCACCCAGAGATAGGAGATGCTGTT
GCCCGACTCAAGGAGGTTCTGGAGTACAATGTTGTCGGAGGCAAGTACAACCGAGGTATCACGG
TGCTGGTGGTGTTCCGGGAGCTGGTGGAGCCCAGGAAGCAGGATGCTGATAGTCTCCAGCGGGC
CCTGACCGTGGGCTGGTGTATTGAACTGCTCCAAGCCTTCTTCCTGGTGGCAGACGACATCGAG
GACTCCTCCCTCACCCGCCGGGGCCAGACCTGCTGGTATCGGAAGCCAGGTATAGGTTTGGATG
CCATCAATGATGCTTTCCTTCTGGAAGCTTGTATCTACCGCCTGCTGAAGTTCTACTGCCGGGA
GCAGCCCTATTACCTGAACCTGATTGAGCTCTTCTTGCAGACTTCCTACAACACTGAGATCGGA
CAGACCCTGGACCTCATCGCCGGCCCCCAGGGCAACGTGGATCTTAGCAGGTTCACTGAAAAGA
GGTACAAGTCTATTGTCAAGTACAAGACAGCTTTCTACTCTTTCTACCTGCCCGTGGCTGCTGC
CATGTATATGGCAGGCATTGACGGGGAGAAGGAGCACGCCAATGCCAAGAAGATCCTGATGGAG
ATGGGAGAGTTCTTTCAGATTCAGGTAGGAAGGCGTGAGGCGCCAGCAGCGAACAGGCTCCGAC
TTTTCTTCTTGTCTCGGCGCCTCTTCATTCCTCCTTTGTCGTCTCCCCACCCACCCCAGGACGA
TTACCTCGACCTCTTTGGGGACCCCAGCGTGACAGGCAAGATCGGCACAGACATCCAGGACAAC
AAGTGCAGCTGGCTGGTGGTTCAGTGTCTGCAGCGGGCCTCTCCGGAGCAGCGCCAAATCCTGC
AGGAGAACTATGGGCAGAAGGATGCTGAGAAGGTGGCCCGGGTGAAGGCGCTGTATGAGGAGAT
GAATCTGCAGGCAGTGTTCCTGCAGTACGAGGAAGACAGTTACAGCCACCTGATGGGTCTCATC
GAGCAGTATGCTGCGCCCCTGCCCCCGGCCATCTTCCTGGAGCTGGCACACAAGATCTACAAGA
GAAGAAAGTAGCCCAGAGACTGAAGGTGGGAGGGGGGGCTCTCAATAAATTACTATCTAACCTC
C

hide sequence

Protein Sequences


Protein RefSeqs	NP_001172060	(Get FASTA)	NCBI Sequence Viewer
	XP_005663367	(Get FASTA)	NCBI Sequence Viewer
	XP_020944215	(Get FASTA)	NCBI Sequence Viewer
	XP_020944216	(Get FASTA)	NCBI Sequence Viewer
	XP_020944218	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAI47708	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000006940
	ENSSSCP00000006940.2
	ENSSSCP00000048368
	ENSSSCP00000048368.2
	ENSSSCP00000067990.1
	ENSSSCP00005016685.1
	ENSSSCP00005016737.1
	ENSSSCP00015037719.1
	ENSSSCP00015037821.1
	ENSSSCP00025022550.1
	ENSSSCP00025022568.1
	ENSSSCP00030009795.1
	ENSSSCP00030009804.1
	ENSSSCP00035025930.1
	ENSSSCP00035025936.1
	ENSSSCP00040039180.1
	ENSSSCP00040039273.1
	ENSSSCP00045025743.1
	ENSSSCP00045025834.1
	ENSSSCP00050019262.1
	ENSSSCP00050019270.1
	ENSSSCP00055024446.1
	ENSSSCP00055024520.1
	ENSSSCP00060026507.1
	ENSSSCP00060026522.1
	ENSSSCP00065005364.1
	ENSSSCP00070047472.1

RefSeq Acc Id:	XP_005663367 ⟸ XM_005663310
- Peptide Label:	isoform X4
- UniProtKB:	A0A287AWX3 (UniProtKB/TrEMBL), A0A5G2QST4 (UniProtKB/TrEMBL), A0A8D1M6M7 (UniProtKB/TrEMBL), A0A8D0ZYT5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNGDQKLDAYARERQDFIQHFSQIVKVLTEEDIGHPEIGDAVARLKEVLEYNVVGGKYNRGITV LVVFRELVEPRKQDADSLQRALTVGWCIELLQAFFLVADDIEDSSLTRRGQTCWYRKPGIGLDA INDAFLLEACIYRLLKFYCREQPYYLNLIELFLQTSYNTEIGQTLDLIAGPQGNVDLSRFTEKR YKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKILMEMGEFFQIQDDYLDLFGDPSVTG KIGTDIQDNKCSWLVVQCLQRASPEQRQILQENYGQKDAEKVARVKALYEEMNLQAVFLQYEED SYSHLMGLIEQYAAPLPPAIFLELAHKIYKRRK hide sequence

RefSeq Acc Id:	XP_020944216 ⟸ XM_021088557
- Peptide Label:	isoform X2
- UniProtKB:	A0A4X1VZX0 (UniProtKB/TrEMBL), D0G6X4 (UniProtKB/TrEMBL), A0A481DNJ7 (UniProtKB/TrEMBL), A0A8D0UAX3 (UniProtKB/TrEMBL), A0A8D1M691 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLPLSRWLRSVGLFLLPAPCWVPRERWLGPLRRPSLVHGCPVLGAWHSARCWCQAWTEEPRAFY SSLRMNGDQKLDAYARERQDFIQHFSQIVKVLTEEDIGHPEIGDAVARLKEVLEYNVVGGKYNR GITVLVVFRELVEPRKQDADSLQRALTVGWCIELLQAFFLVADDIEDSSLTRRGQTCWYRKPGI GLDAINDAFLLEACIYRLLKFYCREQPYYLNLIELFLQTSYNTEIGQTLDLIAGPQGNVDLSRF TEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKILMEMGEFFQIQDDYLDLFGDP SVTGKIGTDIQDNKCSWLVVQCLQRASPEQRQILQENYGQKDAEKVARVKALYEEMNLQAVFLQ YEEDSYSHLMGLIEQYAAPLPPAIFLELAHKIYKRRK hide sequence

RefSeq Acc Id:	XP_020944215 ⟸ XM_021088556
- Peptide Label:	isoform X1
- UniProtKB:	A0A481DNJ7 (UniProtKB/TrEMBL), A0A8D0UAX3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLPLSRWLRSVGLFLLPAPCWVPRERWLGPLRRPSLVHGCPVLGAWHSARCWCQAWTEEPRAFY SSLRMNGDQKLDAYARERQDFIQHFSQIVKVLTEEDIGHPEIGDAVARLKEVLEYNVVGGKYNR GITVLVVFRELVEPRKQDADSLQRALTVGWCIELLQAFFLVADDIEDSSLTRRGQTCWYRKPGI GLDAINDAFLLEACIYRLLKFYCREQPYYLNLIELFLQTSYNTEIGQTLDLIAGPQGNVDLSRF TEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKILMEMGEFFQIQVGRREAPAAN RLRLFFLSRRLFIPPLSSPHPPQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRASPEQR QILQENYGQKDAEKVARVKALYEEMNLQAVFLQYEEDSYSHLMGLIEQYAAPLPPAIFLELAHK IYKRRK hide sequence

RefSeq Acc Id:	XP_020944218 ⟸ XM_021088559
- Peptide Label:	isoform X3
- UniProtKB:	A0A5G2QST4 (UniProtKB/TrEMBL), A0A8D1M6M7 (UniProtKB/TrEMBL), A0A8D0ZYT5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNGDQKLDAYARERQDFIQHFSQIVKVLTEEDIGHPEIGDAVARLKEVLEYNVVGGKYNRGITV LVVFRELVEPRKQDADSLQRALTVGWCIELLQAFFLVADDIEDSSLTRRGQTCWYRKPGIGLDA INDAFLLEACIYRLLKFYCREQPYYLNLIELFLQTSYNTEIGQTLDLIAGPQGNVDLSRFTEKR YKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKILMEMGEFFQIQVGRREAPAANRLRL FFLSRRLFIPPLSSPHPPQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRASPEQRQILQ ENYGQKDAEKVARVKALYEEMNLQAVFLQYEEDSYSHLMGLIEQYAAPLPPAIFLELAHKIYKR RK hide sequence

RefSeq Acc Id:	NP_001172060 ⟸ NM_001185131
- Peptide Label:	precursor
- UniProtKB:	D0G6X4 (UniProtKB/TrEMBL), A0A4X1VZX0 (UniProtKB/TrEMBL), A0A481DNJ7 (UniProtKB/TrEMBL), A0A8D0UAX3 (UniProtKB/TrEMBL), A0A8D1M691 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLPLSRWLRSVGLFLLPAPCWVPRERWLGPLRRPSLVHGCPVLGAWHSARCWCQAWTEEPRAFY SSLRMNGDQKLDAYARERQDFIQHFSQIVKVLTEEDIGHPEIGDAVARLKEVLEYNVVGGKYNR GITVLVVFRELVEPRKQDADSLQRALTVGWCIELLQAFFLVADDIEDSSLTRRGQTCWYRKPGI GLDAINDAFLLEACIYRLLKFYCREQPYYLNLIELFLQTSYNTEIGQTLDLIAGPQGNVDLSRF TEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKILMEMGEFFQIQDDYLDLFGDP SVTGKIGTDIQDNKCSWLVVQCLQRASPEQRQILQENYGQKDAEKVARVKALYEEMNLQAVFLQ YEEDSYSHLMGLIEQYAAPLPPAIFLELAHKIYKRRK hide sequence

RefSeq Acc Id:

ENSSSCP00000067990 ⟸ ENSSSCT00000090341

RefSeq Acc Id:

ENSSSCP00000006940 ⟸ ENSSSCT00000007132

RefSeq Acc Id:

ENSSSCP00000048368 ⟸ ENSSSCT00000065093

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000006512	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00005017272	UniProtKB/TrEMBL
	ENSSSCG00015068809	UniProtKB/TrEMBL
	ENSSSCG00025038906	UniProtKB/TrEMBL
	ENSSSCG00030015627	UniProtKB/TrEMBL
	ENSSSCG00035048092	UniProtKB/TrEMBL
	ENSSSCG00040065199	UniProtKB/TrEMBL
	ENSSSCG00045021635	UniProtKB/TrEMBL
	ENSSSCG00050034607	UniProtKB/TrEMBL
	ENSSSCG00055015477	UniProtKB/TrEMBL
	ENSSSCG00060045566	UniProtKB/TrEMBL
	ENSSSCG00065009888	UniProtKB/TrEMBL
	ENSSSCG00070027853	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000007132	ENTREZGENE
	ENSSSCT00000007132.5	UniProtKB/TrEMBL
	ENSSSCT00000065093	ENTREZGENE
	ENSSSCT00000065093.3	UniProtKB/TrEMBL
	ENSSSCT00000090341.1	UniProtKB/TrEMBL
	ENSSSCT00005027441.1	UniProtKB/TrEMBL
	ENSSSCT00005027496.1	UniProtKB/TrEMBL
	ENSSSCT00015092215.1	UniProtKB/TrEMBL
	ENSSSCT00015092476.1	UniProtKB/TrEMBL
	ENSSSCT00025052905.1	UniProtKB/TrEMBL
	ENSSSCT00025052956.1	UniProtKB/TrEMBL
	ENSSSCT00030021665.1	UniProtKB/TrEMBL
	ENSSSCT00030021677.1	UniProtKB/TrEMBL
	ENSSSCT00035064053.1	UniProtKB/TrEMBL
	ENSSSCT00035064064.1	UniProtKB/TrEMBL
	ENSSSCT00040089139.1	UniProtKB/TrEMBL
	ENSSSCT00040089323.1	UniProtKB/TrEMBL
	ENSSSCT00045037000.1	UniProtKB/TrEMBL
	ENSSSCT00045037133.1	UniProtKB/TrEMBL
	ENSSSCT00050046533.1	UniProtKB/TrEMBL
	ENSSSCT00050046546.1	UniProtKB/TrEMBL
	ENSSSCT00055030708.1	UniProtKB/TrEMBL
	ENSSSCT00055030797.1	UniProtKB/TrEMBL
	ENSSSCT00060061885.1	UniProtKB/TrEMBL
	ENSSSCT00060061909.1	UniProtKB/TrEMBL
	ENSSSCT00065013148.1	UniProtKB/TrEMBL
	ENSSSCT00070055881.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.600.10	UniProtKB/TrEMBL
InterPro	FPS1-like	UniProtKB/TrEMBL
	Isoprenoid_synthase_dom_sf	UniProtKB/TrEMBL
	Polyprenyl_synt	UniProtKB/TrEMBL
	Polyprenyl_synt_CS	UniProtKB/TrEMBL
KEGG Report	ssc:100153932	UniProtKB/TrEMBL
NCBI Gene	FDPS	ENTREZGENE
PANTHER	FARNESYL PYROPHOSPHATE SYNTHASE	UniProtKB/TrEMBL
	FARNESYL-PYROPHOSPHATE SYNTHETASE	UniProtKB/TrEMBL
Pfam	polyprenyl_synt	UniProtKB/TrEMBL
PROSITE	POLYPRENYL_SYNTHASE_1	UniProtKB/TrEMBL
	POLYPRENYL_SYNTHASE_2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48576	UniProtKB/TrEMBL
UniProt	A0A287AWX3	ENTREZGENE, UniProtKB/TrEMBL
	A0A481DNJ7	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1VZX0	ENTREZGENE
	A0A5G2QST4	ENTREZGENE
	A0A8D0UAX3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0VSM6_PIG	UniProtKB/TrEMBL
	A0A8D0ZYT5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1M691	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1M6M7	ENTREZGENE, UniProtKB/TrEMBL
	D0G6X4	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	A0A4X1VZX0	UniProtKB/TrEMBL
	A0A5G2QST4	UniProtKB/TrEMBL
VGNC ID	VGNC:88077	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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