AASS (aminoadipate-semialdehyde synthase) - Rat Genome Database

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Gene: AASS (aminoadipate-semialdehyde synthase) Sus scrofa
Analyze
Symbol: AASS
Name: aminoadipate-semialdehyde synthase
RGD ID: 14285650
Description: ENCODES a protein that exhibits oxidoreductase activity (inferred); saccharopine dehydrogenase (NAD+, L-glutamate-forming) activity (inferred); saccharopine dehydrogenase (NADP+, L-lysine-forming) activity (inferred); INVOLVED IN L-lysine catabolic process (ortholog); PARTICIPATES IN 2-aminoadipic 2-oxoadipic aciduria pathway; glutaric aciduria type I pathway; hyperlysinemia pathway; ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); genetic disease (ortholog); hyperlysinemia (ortholog); FOUND IN cytoplasm (inferred); intracellular membrane-bounded organelle (inferred); mitochondrion (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: alpha-aminoadipic semialdehyde synthase, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1824,974,754 - 25,039,195 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11824,938,366 - 25,039,197 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21826,579,353 - 26,641,402 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
AASS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1824,974,754 - 25,039,195 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11824,938,366 - 25,039,197 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21826,579,353 - 26,641,402 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AASS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387122,073,549 - 122,144,249 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7122,064,583 - 122,144,308 (-)EnsemblGRCh38hg38GRCh38
GRCh377121,713,603 - 121,784,303 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367121,503,423 - 121,561,112 (-)NCBINCBI36Build 36hg18NCBI36
Build 347121,310,137 - 121,367,827NCBI
Celera7116,522,826 - 116,593,571 (-)NCBICelera
Cytogenetic Map7q31.32NCBI
HuRef7116,077,048 - 116,147,810 (-)NCBIHuRef
CHM1_17121,646,898 - 121,717,645 (-)NCBICHM1_1
T2T-CHM13v2.07123,389,454 - 123,460,169 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27121,108,272 - 121,179,018 (-)NCBI
Aass
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39623,072,172 - 23,132,985 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl623,072,172 - 23,132,985 (-)EnsemblGRCm39 Ensembl
GRCm38623,072,173 - 23,132,986 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl623,072,173 - 23,132,986 (-)EnsemblGRCm38mm10GRCm38
MGSCv37623,022,173 - 23,082,986 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36623,022,171 - 23,082,975 (-)NCBIMGSCv36mm8
Celera623,117,896 - 23,183,403 (-)NCBICelera
Cytogenetic Map6A3.1NCBI
cM Map610.27NCBI
Aass
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8452,572,146 - 52,628,811 (-)NCBIGRCr8
mRatBN7.2451,606,461 - 51,663,136 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl451,606,462 - 51,663,136 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx456,573,037 - 56,636,497 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0452,494,066 - 52,557,519 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0450,935,584 - 50,999,363 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0450,152,005 - 50,208,935 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl450,152,452 - 50,200,328 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0449,938,569 - 49,993,864 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4449,479,938 - 49,539,782 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1449,710,958 - 49,806,368 (-)NCBI
Celera446,798,734 - 46,861,408 (-)NCBICelera
Cytogenetic Map4q22NCBI
Aass
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554793,742,757 - 3,814,338 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554793,746,003 - 3,805,835 (-)NCBIChiLan1.0ChiLan1.0
AASS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26158,945,704 - 159,016,545 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1710,955,958 - 11,026,799 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07114,084,792 - 114,155,558 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17126,769,655 - 126,840,346 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7126,769,655 - 126,840,346 (-)Ensemblpanpan1.1panPan2
AASS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11459,950,123 - 59,993,457 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1459,951,216 - 60,000,212 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1459,366,730 - 59,419,159 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01459,984,503 - 60,037,014 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1459,986,237 - 60,035,749 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11460,076,161 - 60,128,175 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01459,703,783 - 59,756,172 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01460,081,118 - 60,133,517 (-)NCBIUU_Cfam_GSD_1.0
Aass
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511849,012,960 - 49,067,984 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366053,136,018 - 3,190,948 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366053,135,977 - 3,190,956 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AASS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12190,891,781 - 90,959,351 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2190,892,023 - 90,959,343 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604212,584,431 - 12,655,125 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Aass
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478313,831,150 - 13,902,082 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478313,831,220 - 13,904,806 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in AASS
4307 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 1
Low 4 4 3 5 2 23 2 1
Below cutoff 6

Sequence


RefSeq Acc Id: ENSSSCT00000018087   ⟹   ENSSSCP00000017598
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1824,974,844 - 25,039,116 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000047587   ⟹   ENSSSCP00000053239
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1824,974,816 - 25,039,195 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000056868   ⟹   ENSSSCP00000052487
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1824,974,827 - 25,039,194 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000092537   ⟹   ENSSSCP00000079609
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1824,974,754 - 25,039,188 (+)Ensembl
RefSeq Acc Id: NM_001244900   ⟹   NP_001231829
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11824,974,851 - 25,036,699 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005673204   ⟹   XP_005673261
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11824,982,772 - 25,039,197 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013985639   ⟹   XP_013841093
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11824,975,016 - 25,039,197 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013985640   ⟹   XP_013841094
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11824,974,765 - 25,039,197 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021078482   ⟹   XP_020934141
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11824,938,366 - 25,039,197 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021078483   ⟹   XP_020934142
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11824,938,366 - 25,039,197 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020934141   ⟸   XM_021078482
- Peptide Label: isoform X1
- UniProtKB: A0A8W4FJV3 (UniProtKB/TrEMBL),   A0A8D1QHI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020934142   ⟸   XM_021078483
- Peptide Label: isoform X1
- UniProtKB: A0A8W4FJV3 (UniProtKB/TrEMBL),   A0A8D1QHI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013841094   ⟸   XM_013985640
- Peptide Label: isoform X2
- UniProtKB: F1SLX5 (UniProtKB/TrEMBL),   A0A8D1QBB6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001231829   ⟸   NM_001244900
- UniProtKB: A0A8D0I6D8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013841093   ⟸   XM_013985639
- Peptide Label: isoform X1
- UniProtKB: A0A8W4FJV3 (UniProtKB/TrEMBL),   A0A8D1QHI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005673261   ⟸   XM_005673204
- Peptide Label: isoform X1
- UniProtKB: A0A8W4FJV3 (UniProtKB/TrEMBL),   A0A8D1QHI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000052487   ⟸   ENSSSCT00000056868
RefSeq Acc Id: ENSSSCP00000053239   ⟸   ENSSSCT00000047587
RefSeq Acc Id: ENSSSCP00000017598   ⟸   ENSSSCT00000018087
RefSeq Acc Id: ENSSSCP00000079609   ⟸   ENSSSCT00000092537

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000016613 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005006037 UniProtKB/TrEMBL
  ENSSSCG00025065405 UniProtKB/TrEMBL
  ENSSSCG00035016814 UniProtKB/TrEMBL
  ENSSSCG00040060906 UniProtKB/TrEMBL
  ENSSSCG00045038995 UniProtKB/TrEMBL
  ENSSSCG00055011009 UniProtKB/TrEMBL
  ENSSSCG00065063327 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000018087 ENTREZGENE
  ENSSSCT00000018087.5 UniProtKB/TrEMBL
  ENSSSCT00000047587 ENTREZGENE
  ENSSSCT00000047587.3 UniProtKB/TrEMBL
  ENSSSCT00000056868.2 UniProtKB/TrEMBL
  ENSSSCT00000092537 ENTREZGENE
  ENSSSCT00000092537.1 UniProtKB/TrEMBL
  ENSSSCT00005009270.1 UniProtKB/TrEMBL
  ENSSSCT00005009301.1 UniProtKB/TrEMBL
  ENSSSCT00005009332.1 UniProtKB/TrEMBL
  ENSSSCT00005009356.1 UniProtKB/TrEMBL
  ENSSSCT00005009391.1 UniProtKB/TrEMBL
  ENSSSCT00025089799.1 UniProtKB/TrEMBL
  ENSSSCT00025090186.1 UniProtKB/TrEMBL
  ENSSSCT00025090503.1 UniProtKB/TrEMBL
  ENSSSCT00035021550.1 UniProtKB/TrEMBL
  ENSSSCT00035021561.1 UniProtKB/TrEMBL
  ENSSSCT00035021567.1 UniProtKB/TrEMBL
  ENSSSCT00035021581.1 UniProtKB/TrEMBL
  ENSSSCT00040082975.1 UniProtKB/TrEMBL
  ENSSSCT00040083233.1 UniProtKB/TrEMBL
  ENSSSCT00040083444.1 UniProtKB/TrEMBL
  ENSSSCT00040083740.1 UniProtKB/TrEMBL
  ENSSSCT00040084000.1 UniProtKB/TrEMBL
  ENSSSCT00045067800.1 UniProtKB/TrEMBL
  ENSSSCT00045067819.1 UniProtKB/TrEMBL
  ENSSSCT00045067829.1 UniProtKB/TrEMBL
  ENSSSCT00055021633.1 UniProtKB/TrEMBL
  ENSSSCT00055021693.1 UniProtKB/TrEMBL
  ENSSSCT00055021750.1 UniProtKB/TrEMBL
  ENSSSCT00055021802.1 UniProtKB/TrEMBL
  ENSSSCT00065086866.1 UniProtKB/TrEMBL
  ENSSSCT00065086880.1 UniProtKB/TrEMBL
  ENSSSCT00065086887.1 UniProtKB/TrEMBL
Gene3D-CATH Domain 3, Saccharopine reductase UniProtKB/TrEMBL
  NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
InterPro AlaDH/PNT_N UniProtKB/TrEMBL
  AlaDH/PNT_NAD(H)-bd UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
  Sacchrp_dh_C UniProtKB/TrEMBL
  Sacchrp_dh_NADP UniProtKB/TrEMBL
NCBI Gene AASS ENTREZGENE
PANTHER ALPHA-AMINOADIPIC SEMIALDEHYDE SYNTHASE, MITOCHONDRIAL UniProtKB/TrEMBL
  SACCHAROPINE DEHYDROGENASE UniProtKB/TrEMBL
Pfam AlaDh_PNT_N UniProtKB/TrEMBL
  Sacchrp_dh_C UniProtKB/TrEMBL
  Sacchrp_dh_NADP UniProtKB/TrEMBL
SMART AlaDh_PNT_C UniProtKB/TrEMBL
  AlaDh_PNT_N UniProtKB/TrEMBL
Superfamily-SCOP Formate/glycerate dehydrogenase catalytic domain-like UniProtKB/TrEMBL
  Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain UniProtKB/TrEMBL
  SSF51735 UniProtKB/TrEMBL
UniProt A0A287B8T1_PIG UniProtKB/TrEMBL
  A0A287BAZ8_PIG UniProtKB/TrEMBL
  A0A8D0I2Q1_PIG UniProtKB/TrEMBL
  A0A8D0I6D8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0I7Q6_PIG UniProtKB/TrEMBL
  A0A8D0IA01_PIG UniProtKB/TrEMBL
  A0A8D0YT00_PIG UniProtKB/TrEMBL
  A0A8D0YUY5_PIG UniProtKB/TrEMBL
  A0A8D0YW87_PIG UniProtKB/TrEMBL
  A0A8D1FDQ6_PIG UniProtKB/TrEMBL
  A0A8D1FER8_PIG UniProtKB/TrEMBL
  A0A8D1FKY3_PIG UniProtKB/TrEMBL
  A0A8D1JS67_PIG UniProtKB/TrEMBL
  A0A8D1KHS1_PIG UniProtKB/TrEMBL
  A0A8D1KHU0_PIG UniProtKB/TrEMBL
  A0A8D1LBA3_PIG UniProtKB/TrEMBL
  A0A8D1Q7V8_PIG UniProtKB/TrEMBL
  A0A8D1QBB6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1QHI7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FJV3 ENTREZGENE, UniProtKB/TrEMBL
  F1SLX5 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:84944 ENTREZGENE