SLC7A3 (solute carrier family 7 member 3) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: SLC7A3 (solute carrier family 7 member 3) Sus scrofa
Analyze
Symbol: SLC7A3
Name: solute carrier family 7 member 3
RGD ID: 14268408
Description: ENCODES a protein that exhibits basic amino acid transmembrane transporter activity (ortholog); L-arginine transmembrane transporter activity (ortholog); L-lysine transmembrane transporter activity (ortholog); INVOLVED IN basic amino acid transmembrane transport (ortholog); L-arginine transmembrane transport (ortholog); lysine transport (ortholog); ASSOCIATED WITH autistic disorder (ortholog); FG Syndrome 1 (ortholog); intellectual disability (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: cationic amino acid transporter 3; solute carrier family 7 (cationic amino acid transporter, y+ system), member 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX56,937,086 - 56,942,357 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X56,937,081 - 56,942,331 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X64,467,441 - 64,473,169 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC7A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX56,937,086 - 56,942,357 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X56,937,081 - 56,942,331 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X64,467,441 - 64,473,169 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC7A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X70,925,579 - 70,931,096 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX70,925,579 - 70,931,125 (-)EnsemblGRCh38hg38GRCh38
GRCh37X70,145,429 - 70,150,946 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X70,062,154 - 70,067,684 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X69,928,452 - 69,933,951NCBI
CeleraX70,499,018 - 70,504,564 (-)NCBICelera
Cytogenetic MapXq13.1NCBI
HuRefX63,965,473 - 63,969,918 (-)NCBIHuRef
CHM1_1X70,036,878 - 70,042,423 (-)NCBICHM1_1
T2T-CHM13v2.0X69,359,629 - 69,365,145 (-)NCBIT2T-CHM13v2.0
Slc7a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X100,122,752 - 100,134,058 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX100,122,816 - 100,129,626 (-)EnsemblGRCm39 Ensembl
GRCm38X101,079,146 - 101,090,452 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX101,079,210 - 101,086,020 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X98,274,560 - 98,280,691 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X97,281,940 - 97,288,071 (-)NCBIMGSCv36mm8
CeleraX87,997,561 - 88,004,049 (-)NCBICelera
Cytogenetic MapXC3- DNCBI
cM MapX43.72NCBI
Slc7a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X70,250,089 - 70,256,610 (-)NCBIGRCr8
mRatBN7.2X66,210,071 - 66,216,482 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX66,210,081 - 66,215,708 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX67,693,428 - 67,698,141 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X71,193,823 - 71,198,536 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X68,754,728 - 68,759,443 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X70,972,767 - 70,979,466 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX70,972,765 - 70,978,952 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X71,824,798 - 71,831,477 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X89,159,603 - 89,164,314 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X89,233,045 - 89,237,747 (-)NCBI
CeleraX66,566,815 - 66,571,524 (-)NCBICelera
Cytogenetic MapXq22NCBI
Slc7a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547510,457,787 - 10,464,514 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547510,457,859 - 10,463,828 (-)NCBIChiLan1.0ChiLan1.0
SLC7A3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X70,603,135 - 70,608,707 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X70,606,738 - 70,612,310 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X60,193,997 - 60,199,564 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X70,253,432 - 70,258,991 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX70,253,441 - 70,258,991 (-)Ensemblpanpan1.1panPan2
SLC7A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X55,282,474 - 55,289,513 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX46,109,853 - 46,233,444 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X56,251,502 - 56,375,048 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X54,219,879 - 54,343,367 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X55,551,479 - 55,674,950 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X55,478,334 - 55,601,870 (-)NCBIUU_Cfam_GSD_1.0
Slc7a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X46,899,348 - 46,905,103 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936762661,491 - 667,298 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936762661,532 - 667,277 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC7A3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X60,714,846 - 60,721,813 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX60,714,896 - 60,719,594 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660652,576,649 - 2,582,634 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc7a3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249031,100,424 - 1,107,087 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249031,100,518 - 1,106,993 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC7A3
47 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system hemolymphoid system nervous system reproductive system respiratory system
High
Medium
Low 9 1
Below cutoff 1 1 8 1

Sequence


RefSeq Acc Id: ENSSSCT00000024763   ⟹   ENSSSCP00000025547
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX56,937,086 - 56,942,357 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000062683   ⟹   ENSSSCP00000051109
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX56,937,086 - 56,942,357 (-)Ensembl
RefSeq Acc Id: NM_001130973   ⟹   NP_001124445
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X56,937,081 - 56,942,331 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001124445   ⟸   NM_001130973
- UniProtKB: B3VN79 (UniProtKB/TrEMBL),   A0A480MHE7 (UniProtKB/TrEMBL),   A0A4X1W106 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000025547   ⟸   ENSSSCT00000024763
RefSeq Acc Id: ENSSSCP00000051109   ⟸   ENSSSCT00000062683

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000024346 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005025370 UniProtKB/TrEMBL
  ENSSSCG00015019281 UniProtKB/TrEMBL
  ENSSSCG00025037965 UniProtKB/TrEMBL
  ENSSSCG00030003202 UniProtKB/TrEMBL
  ENSSSCG00035013948 UniProtKB/TrEMBL
  ENSSSCG00040031813 UniProtKB/TrEMBL
  ENSSSCG00045022679 UniProtKB/TrEMBL
  ENSSSCG00050008626 UniProtKB/TrEMBL
  ENSSSCG00055008657 UniProtKB/TrEMBL
  ENSSSCG00060023233 UniProtKB/TrEMBL
  ENSSSCG00065058579 UniProtKB/TrEMBL
  ENSSSCG00070027674 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000024763.4 UniProtKB/TrEMBL
  ENSSSCT00000062683 ENTREZGENE
  ENSSSCT00000062683.3 UniProtKB/TrEMBL
  ENSSSCT00005040563.1 UniProtKB/TrEMBL
  ENSSSCT00015025532.1 UniProtKB/TrEMBL
  ENSSSCT00015025578.1 UniProtKB/TrEMBL
  ENSSSCT00025051670.1 UniProtKB/TrEMBL
  ENSSSCT00025051706.1 UniProtKB/TrEMBL
  ENSSSCT00030004169.1 UniProtKB/TrEMBL
  ENSSSCT00030004180.1 UniProtKB/TrEMBL
  ENSSSCT00035017665.1 UniProtKB/TrEMBL
  ENSSSCT00035017677.1 UniProtKB/TrEMBL
  ENSSSCT00040042845.1 UniProtKB/TrEMBL
  ENSSSCT00040042889.1 UniProtKB/TrEMBL
  ENSSSCT00045038720.1 UniProtKB/TrEMBL
  ENSSSCT00045038818.1 UniProtKB/TrEMBL
  ENSSSCT00050011714.1 UniProtKB/TrEMBL
  ENSSSCT00050011735.1 UniProtKB/TrEMBL
  ENSSSCT00055016953.1 UniProtKB/TrEMBL
  ENSSSCT00055017031.1 UniProtKB/TrEMBL
  ENSSSCT00060031523.1 UniProtKB/TrEMBL
  ENSSSCT00065080167.1 UniProtKB/TrEMBL
  ENSSSCT00065080174.1 UniProtKB/TrEMBL
  ENSSSCT00070055568.1 UniProtKB/TrEMBL
  ENSSSCT00070055577.1 UniProtKB/TrEMBL
  ENSSSCT00070055583.1 UniProtKB/TrEMBL
Gene3D-CATH Amino acid/polyamine transporter I UniProtKB/TrEMBL
InterPro AA/rel_permease1 UniProtKB/TrEMBL
  Cat_AA_permease UniProtKB/TrEMBL
  CAT_C UniProtKB/TrEMBL
KEGG Report ssc:100171387 UniProtKB/TrEMBL
NCBI Gene SLC7A3 ENTREZGENE
PANTHER INNER MEMBRANE TRANSPORTER YGJI-RELATED UniProtKB/TrEMBL
  PTHR43243:SF20 UniProtKB/TrEMBL
Pfam AA_permease_2 UniProtKB/TrEMBL
  AA_permease_C UniProtKB/TrEMBL
PIRSF AA_transporter UniProtKB/TrEMBL
UniProt A0A480MHE7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W106 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W121_PIG UniProtKB/TrEMBL
  A0A8D0LQ05_PIG UniProtKB/TrEMBL
  A0A8D0MX96_PIG UniProtKB/TrEMBL
  A0A8D1E6M7_PIG UniProtKB/TrEMBL
  A0A8D1E6V2_PIG UniProtKB/TrEMBL
  B3VN79 ENTREZGENE, UniProtKB/TrEMBL
  I3LN75_PIG UniProtKB/TrEMBL
VGNC ID VGNC:98327 ENTREZGENE