KCNA5 (potassium voltage-gated channel subfamily A member 5) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: KCNA5 (potassium voltage-gated channel subfamily A member 5) Sus scrofa
Analyze
Symbol: KCNA5
Name: potassium voltage-gated channel subfamily A member 5
RGD ID: 14170724
Description: ENCODES a protein that exhibits outward rectifier potassium channel activity (ortholog); signaling receptor binding (ortholog); INVOLVED IN negative regulation of cytosolic calcium ion concentration (ortholog); Notch signaling pathway (ortholog); positive regulation of G1/S transition of mitotic cell cycle (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH atrial fibrillation (ortholog); Brugada syndrome 1 (ortholog); Cardiac Arrhythmias (ortholog); FOUND IN intercalated disc (ortholog); intracellular canaliculus (ortholog); perinuclear region of cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Kv1.5 potassium channel; potassium voltage-gated channel, shaker-related subfamily, member 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl565,439,336 - 65,442,207 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1565,439,336 - 65,442,207 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2567,652,617 - 67,655,142 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
acebutolol pharmacodynamics pathway   (ISO)
adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway  (ISO)
amiodarone pharmacodynamics pathway  (ISO)
amlodipine pharmacodynamics pathway  (ISO)
atenolol pharmacodynamics pathway  (ISO)
betaxolol pharmacodynamics pathway  (ISO)
bisoprolol pharmacodynamics pathway  (ISO)
bupranolol drug pathway  (ISO)
bupranolol pharmacodynamics pathway  (ISO)
carvedilol pharmacodynamics pathway  (ISO)
diltiazem pharmacodynamics pathway  (ISO)
disopyramide pharmacodynamics pathway  (ISO)
dobutamine pharmacodynamics pathway  (ISO)
esmolol pharmacodynamics pathway  (ISO)
flecainde pharmacodynamics pathway  (ISO)
fosphenytoin pharmacodynamics pathway  (ISO)
ibutilide pharmacodynamics pathway  (ISO)
isoprenaline pharmacodynamics pathway  (ISO)
isradipine pharmacodynamics pathway  (ISO)
levobunolol pharmacodynamics pathway  (ISO)
lidocaine pharmacodynamics pathway  (ISO)
metoprolol pharmacodynamics pathway  (ISO)
mexiletine pharmacodynamics pathway  (ISO)
nadolol pharmacodynamics pathway  (ISO)
nebivolol pharmacodynamics pathway  (ISO)
nifedipine pharmacodynamics pathway  (ISO)
nimodipine pharmacodynamics pathway  (ISO)
nisoldipine pharmacodynamics pathway  (ISO)
nitrendipine pharmacodynamics pathway  (ISO)
penbutolol pharmacodynamics pathway  (ISO)
phenytoin pharmacodynamics pathway  (ISO)
pindolol pharmacodynamics pathway  (ISO)
procainamide pharmacodynamics pathway  (ISO)
propranolol pharmacodynamics pathway  (ISO)
quinidine pharmacodynamics pathway  (ISO)
sotalol pharmacodynamics pathway  (ISO)
timolol pharmacodynamics pathway  (ISO)
verapamil pharmacodynamics pathway  (ISO)

References
Additional References at PubMed
PMID:15340774   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
KCNA5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl565,439,336 - 65,442,207 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1565,439,336 - 65,442,207 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2567,652,617 - 67,655,142 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KCNA5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38125,043,879 - 5,046,788 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl125,043,879 - 5,046,788 (+)EnsemblGRCh38hg38GRCh38
GRCh37125,153,045 - 5,155,954 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36125,023,346 - 5,026,210 (+)NCBINCBI36Build 36hg18NCBI36
Build 34125,023,345 - 5,026,210NCBI
Celera126,774,165 - 6,777,029 (+)NCBICelera
Cytogenetic Map12p13.32NCBI
HuRef125,009,439 - 5,012,308 (+)NCBIHuRef
CHM1_1125,152,272 - 5,155,141 (+)NCBICHM1_1
T2T-CHM13v2.0125,050,280 - 5,053,156 (+)NCBIT2T-CHM13v2.0
Kcna5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396126,509,514 - 126,512,518 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6126,509,514 - 126,512,375 (-)EnsemblGRCm39 Ensembl
GRCm386126,532,551 - 126,535,555 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6126,532,551 - 126,535,412 (-)EnsemblGRCm38mm10GRCm38
MGSCv376126,482,569 - 126,485,573 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366126,498,172 - 126,501,031 (-)NCBIMGSCv36mm8
Celera6128,202,194 - 128,205,198 (-)NCBICelera
Cytogenetic Map6F3NCBI
cM Map661.35NCBI
Kcna5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84161,040,853 - 161,044,311 (-)NCBIGRCr8
mRatBN7.24159,354,689 - 159,358,173 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4159,350,097 - 159,357,697 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4165,584,496 - 165,587,452 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04161,367,410 - 161,370,366 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04160,001,429 - 160,004,385 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04159,077,195 - 159,079,003 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4159,077,195 - 159,079,003 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04226,075,051 - 226,076,859 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44162,896,283 - 162,898,091 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14163,141,218 - 163,143,027 (-)NCBI
Celera4148,072,289 - 148,074,097 (-)NCBICelera
RH 3.4 Map41009.3RGD
Cytogenetic Map4q42NCBI
Kcna5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554132,836,146 - 2,837,966 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554132,835,730 - 2,838,761 (+)NCBIChiLan1.0ChiLan1.0
KCNA5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21010,595,714 - 10,598,602 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11210,592,469 - 10,595,360 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0125,165,057 - 5,168,307 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1125,083,877 - 5,086,739 (+)NCBIpanpan1.1PanPan1.1panPan2
KCNA5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12739,808,987 - 39,810,789 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2739,756,363 - 39,811,035 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha276,870,413 - 6,872,215 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02740,165,046 - 40,166,848 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12740,035,731 - 40,037,533 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02740,079,166 - 40,080,968 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0276,281,461 - 6,283,263 (+)NCBIUU_Cfam_GSD_1.0
KCNA5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1115,085,221 - 5,088,135 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl115,085,518 - 5,087,335 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660633,158,446 - 3,161,477 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kcna5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248602,039,771 - 2,045,867 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248602,042,325 - 2,045,953 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in KCNA5
58 total Variants

Expression


Sequence


RefSeq Acc Id: ENSSSCT00000099650   ⟹   ENSSSCP00000075688
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl565,439,336 - 65,442,207 (-)Ensembl
RefSeq Acc Id: NM_001006593   ⟹   NP_001006593
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1565,439,336 - 65,442,207 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001006593 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAV31098 (Get FASTA)   NCBI Sequence Viewer  
  AAY67750 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000075688
  ENSSSCP00000075688.1
  ENSSSCP00015029232.1
  ENSSSCP00025031085.1
  ENSSSCP00065014640.1
  ENSSSCP00070031148.1
RefSeq Acc Id: NP_001006593   ⟸   NM_001006593
- UniProtKB: Q5USC2 (UniProtKB/TrEMBL),   I3LQB5 (UniProtKB/TrEMBL),   A0A4X1UM58 (UniProtKB/TrEMBL),   A0A8D0P514 (UniProtKB/TrEMBL),   A0A8D0SER8 (UniProtKB/TrEMBL),   A0A8D1Y584 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000075688   ⟸   ENSSSCT00000099650
Protein Domains
BTB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000056277 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015054737 UniProtKB/TrEMBL
  ENSSSCG00025052477 UniProtKB/TrEMBL
  ENSSSCG00065026128 UniProtKB/TrEMBL
  ENSSSCG00070018904 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000099650 ENTREZGENE
  ENSSSCT00000099650.1 UniProtKB/TrEMBL
  ENSSSCT00015072883.1 UniProtKB/TrEMBL
  ENSSSCT00025071758.1 UniProtKB/TrEMBL
  ENSSSCT00065035082.1 UniProtKB/TrEMBL
  ENSSSCT00070037266.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
  1.20.120.350 UniProtKB/TrEMBL
InterPro BTB/POZ_dom UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/TrEMBL
  K_chnl_volt-dep_Kv UniProtKB/TrEMBL
  K_chnl_volt-dep_Kv1 UniProtKB/TrEMBL
  K_chnl_volt-dep_Kv1.5 UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
  T1-type_BTB UniProtKB/TrEMBL
  Volt_channel_dom_sf UniProtKB/TrEMBL
KEGG Report ssc:474166 UniProtKB/TrEMBL
NCBI Gene KCNA5 ENTREZGENE
PANTHER POTASSIUM VOLTAGE-GATED CHANNEL SUBFAMILY A MEMBER 5 UniProtKB/TrEMBL
  PTHR11537 UniProtKB/TrEMBL
Pfam BTB_2 UniProtKB/TrEMBL
  Ion_trans UniProtKB/TrEMBL
PRINTS KCHANNEL UniProtKB/TrEMBL
  KV15CHANNEL UniProtKB/TrEMBL
  KVCHANNEL UniProtKB/TrEMBL
  SHAKERCHANEL UniProtKB/TrEMBL
SMART BTB UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/TrEMBL
  Voltage-gated potassium channels UniProtKB/TrEMBL
UniProt A0A4X1UM58 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0P514 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0SER8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1Y584 ENTREZGENE, UniProtKB/TrEMBL
  I3LQB5 ENTREZGENE
  Q5USC2 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary I3LQB5 UniProtKB/TrEMBL
VGNC ID VGNC:111811 ENTREZGENE