GOT2 (glutamic-oxaloacetic transaminase 2) - Rat Genome Database

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Gene: GOT2 (glutamic-oxaloacetic transaminase 2) Sus scrofa
Analyze
Symbol: GOT2
Name: glutamic-oxaloacetic transaminase 2
RGD ID: 14088010
Description: ENCODES a protein that exhibits amino acid binding (ortholog); carboxylic acid binding (ortholog); enzyme binding (ortholog); INVOLVED IN 2-oxoglutarate metabolic process (ortholog); amino acid metabolic process (ortholog); aspartate biosynthetic process (ortholog); PARTICIPATES IN 2-hydroxyglutaric aciduria pathway; argininosuccinic aciduria pathway; carbamoyl phosphate synthetase I deficiency pathway; ASSOCIATED WITH acute kidney failure (ortholog); Bardet-Biedl syndrome (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN cell surface (ortholog); mitochondrial inner membrane (ortholog); mitochondrial matrix (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: aspartate aminotransferase, mitochondrial; FABP-1; FABPpm; fatty acid-binding protein; glutamate oxaloacetate transaminase 2; glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2); kynurenine aminotransferase 4; kynurenine aminotransferase IV; kynurenine--oxoglutarate transaminase 4; kynurenine--oxoglutarate transaminase IV; mAspAT; plasma membrane-associated fatty acid-binding protein; transaminase A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl620,407,200 - 20,432,067 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1620,407,203 - 20,431,849 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2618,502,171 - 18,527,683 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:121997   PMID:3862118   PMID:7391012   PMID:7408859   PMID:8672129   PMID:14681463   PMID:17145712   PMID:19172260   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GOT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl620,407,200 - 20,432,067 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1620,407,203 - 20,431,849 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2618,502,171 - 18,527,683 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GOT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381658,707,131 - 58,734,316 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1658,707,131 - 58,734,342 (-)EnsemblGRCh38hg38GRCh38
GRCh371658,741,035 - 58,768,220 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361657,298,536 - 57,325,747 (-)NCBINCBI36Build 36hg18NCBI36
Build 341657,298,537 - 57,325,641NCBI
Celera1643,241,839 - 43,268,969 (-)NCBICelera
Cytogenetic Map16q21NCBI
HuRef1644,606,528 - 44,633,785 (-)NCBIHuRef
CHM1_11660,147,934 - 60,175,160 (-)NCBICHM1_1
T2T-CHM13v2.01664,499,639 - 64,526,824 (-)NCBIT2T-CHM13v2.0
Got2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39896,590,761 - 96,615,029 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl896,590,762 - 96,615,175 (-)EnsemblGRCm39 Ensembl
GRCm38895,864,133 - 95,888,401 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl895,864,134 - 95,888,547 (-)EnsemblGRCm38mm10GRCm38
MGSCv37898,388,037 - 98,412,265 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36898,753,266 - 98,777,494 (-)NCBIMGSCv36mm8
Celera8100,174,831 - 100,199,164 (-)NCBICelera
Cytogenetic Map8D1NCBI
cM Map847.79NCBI
Got2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8199,180,428 - 9,206,113 (+)NCBIGRCr8
mRatBN7.2199,174,304 - 9,199,995 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl199,174,311 - 9,199,994 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx199,143,186 - 9,168,707 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0199,910,004 - 9,935,525 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0199,196,308 - 9,221,830 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0199,587,637 - 9,613,323 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl199,587,653 - 9,613,340 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0199,572,757 - 9,598,443 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4199,629,687 - 9,655,336 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1199,634,512 - 9,660,162 (+)NCBI
Celera199,072,871 - 9,098,515 (+)NCBICelera
RH 3.4 Map1972.43RGD
Cytogenetic Map19p13NCBI
Got2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543316,122,824 - 16,145,113 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543316,121,795 - 16,145,129 (-)NCBIChiLan1.0ChiLan1.0
GOT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21868,190,297 - 68,217,343 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11674,113,908 - 74,140,940 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01638,995,770 - 39,022,750 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11658,120,781 - 58,147,378 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1658,120,781 - 58,147,378 (-)Ensemblpanpan1.1panPan2
GOT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1257,968,833 - 57,994,219 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl257,968,833 - 57,994,218 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha254,600,250 - 54,625,432 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0258,509,907 - 58,535,139 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl258,509,974 - 58,535,138 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1255,357,609 - 55,362,222 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0256,341,620 - 56,366,972 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0257,239,528 - 57,264,732 (+)NCBIUU_Cfam_GSD_1.0
GOT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1544,645,721 - 44,670,917 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl544,645,602 - 44,670,918 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604731,493,979 - 31,519,503 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Got2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474627,558,005 - 27,586,257 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474627,557,994 - 27,586,257 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GOT2
989 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 23 2 3 3
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000041306   ⟹   ENSSSCP00000037719
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl620,407,201 - 20,431,928 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000045967   ⟹   ENSSSCP00000055842
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl620,407,202 - 20,431,567 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000062696   ⟹   ENSSSCP00000037314
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl620,407,202 - 20,431,927 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000075513   ⟹   ENSSSCP00000060129
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl620,407,200 - 20,432,067 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000086581   ⟹   ENSSSCP00000068372
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl620,407,202 - 20,431,927 (-)Ensembl
RefSeq Acc Id: NM_213928   ⟹   NP_999093
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1620,407,203 - 20,431,849 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_999093 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA30999 (Get FASTA)   NCBI Sequence Viewer  
  CBF96249 (Get FASTA)   NCBI Sequence Viewer  
  CBV09769 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000037719
  ENSSSCP00000037719.3
  ENSSSCP00000055842.2
  ENSSSCP00000060129.1
  ENSSSCP00005023175.1
  ENSSSCP00005023195.1
  ENSSSCP00025012968.1
  ENSSSCP00025012995.1
  ENSSSCP00025013012.1
  ENSSSCP00025013016.1
  ENSSSCP00030037375.1
  ENSSSCP00030037409.1
  ENSSSCP00030037433.1
  ENSSSCP00030037446.1
  ENSSSCP00035048309.1
  ENSSSCP00035048314.1
  ENSSSCP00035048321.1
  ENSSSCP00035048324.1
  ENSSSCP00040018588.1
  ENSSSCP00040018628.1
  ENSSSCP00040018648.1
  ENSSSCP00040018668.1
  ENSSSCP00040018700.1
  ENSSSCP00040018741.1
  ENSSSCP00040018778.1
  ENSSSCP00045004961.1
  ENSSSCP00045004967.1
  ENSSSCP00045004968.1
  ENSSSCP00045004972.1
  ENSSSCP00045004973.1
  ENSSSCP00050016823.1
  ENSSSCP00050016825.1
  ENSSSCP00050016827.1
  ENSSSCP00050016831.1
  ENSSSCP00055004358.1
  ENSSSCP00055004374.1
  ENSSSCP00055004387.1
  ENSSSCP00055004398.1
  ENSSSCP00060000123.1
  ENSSSCP00060000124.1
  ENSSSCP00060000125.1
  ENSSSCP00060000127.1
  ENSSSCP00065040666.1
  ENSSSCP00065040672.1
  ENSSSCP00065040677.1
  ENSSSCP00065040679.1
  ENSSSCP00070032592.1
  ENSSSCP00070032605.1
  ENSSSCP00070032615.1
  ENSSSCP00070032622.1
GenBank Protein P00506 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_999093   ⟸   NM_213928
- Peptide Label: precursor
- UniProtKB: Q29230 (UniProtKB/Swiss-Prot),   P00506 (UniProtKB/Swiss-Prot),   A0A480XZ96 (UniProtKB/TrEMBL),   A0A4X1UV54 (UniProtKB/TrEMBL),   A0A5S6HCM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000037719   ⟸   ENSSSCT00000041306
RefSeq Acc Id: ENSSSCP00000060129   ⟸   ENSSSCT00000075513
RefSeq Acc Id: ENSSSCP00000055842   ⟸   ENSSSCT00000045967
RefSeq Acc Id: ENSSSCP00000068372   ⟸   ENSSSCT00000086581
RefSeq Acc Id: ENSSSCP00000037314   ⟸   ENSSSCT00000062696

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000032985 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005023696 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00025022578 UniProtKB/TrEMBL
  ENSSSCG00030058392 UniProtKB/TrEMBL
  ENSSSCG00035080663 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00040032679 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00045004323 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00050030308 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00055002927 UniProtKB/TrEMBL
  ENSSSCG00060000528 UniProtKB/TrEMBL
  ENSSSCG00065067696 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00070019669 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000041306 ENTREZGENE
  ENSSSCT00000041306.3 UniProtKB/TrEMBL
  ENSSSCT00000045967.3 UniProtKB/TrEMBL
  ENSSSCT00000075513.2 UniProtKB/TrEMBL
  ENSSSCT00005037831.1 UniProtKB/Swiss-Prot
  ENSSSCT00005037860.1 UniProtKB/TrEMBL
  ENSSSCT00025030687.1 UniProtKB/TrEMBL
  ENSSSCT00025030800.1 UniProtKB/TrEMBL
  ENSSSCT00025030837.1 UniProtKB/TrEMBL
  ENSSSCT00025030841.1 UniProtKB/TrEMBL
  ENSSSCT00030081468.1 UniProtKB/TrEMBL
  ENSSSCT00030081521.1 UniProtKB/TrEMBL
  ENSSSCT00030081565.1 UniProtKB/TrEMBL
  ENSSSCT00030081586.1 UniProtKB/TrEMBL
  ENSSSCT00035110635.1 UniProtKB/TrEMBL
  ENSSSCT00035110645.1 UniProtKB/TrEMBL
  ENSSSCT00035110654.1 UniProtKB/TrEMBL
  ENSSSCT00035110663.1 UniProtKB/Swiss-Prot
  ENSSSCT00040044232.1 UniProtKB/TrEMBL
  ENSSSCT00040044315.1 UniProtKB/TrEMBL
  ENSSSCT00040044357.1 UniProtKB/Swiss-Prot
  ENSSSCT00040044396.1 UniProtKB/TrEMBL
  ENSSSCT00040044476.1 UniProtKB/Swiss-Prot
  ENSSSCT00040044574.1 UniProtKB/TrEMBL
  ENSSSCT00040044672.1 UniProtKB/TrEMBL
  ENSSSCT00045007223.1 UniProtKB/TrEMBL
  ENSSSCT00045007230.1 UniProtKB/TrEMBL
  ENSSSCT00045007231.1 UniProtKB/TrEMBL
  ENSSSCT00045007235.1 UniProtKB/Swiss-Prot
  ENSSSCT00045007236.1 UniProtKB/TrEMBL
  ENSSSCT00050040739.1 UniProtKB/TrEMBL
  ENSSSCT00050040748.1 UniProtKB/TrEMBL
  ENSSSCT00050040756.1 UniProtKB/TrEMBL
  ENSSSCT00050040765.1 UniProtKB/Swiss-Prot
  ENSSSCT00055005617.1 UniProtKB/TrEMBL
  ENSSSCT00055005635.1 UniProtKB/TrEMBL
  ENSSSCT00055005654.1 UniProtKB/TrEMBL
  ENSSSCT00055005665.1 UniProtKB/TrEMBL
  ENSSSCT00060000600.1 UniProtKB/TrEMBL
  ENSSSCT00060000603.1 UniProtKB/TrEMBL
  ENSSSCT00060000607.1 UniProtKB/TrEMBL
  ENSSSCT00060000609.1 UniProtKB/TrEMBL
  ENSSSCT00065092933.1 UniProtKB/TrEMBL
  ENSSSCT00065092949.1 UniProtKB/TrEMBL
  ENSSSCT00065092962.1 UniProtKB/Swiss-Prot
  ENSSSCT00065092965.1 UniProtKB/TrEMBL
  ENSSSCT00070038926.1 UniProtKB/TrEMBL
  ENSSSCT00070038939.1 UniProtKB/TrEMBL
  ENSSSCT00070038950.1 UniProtKB/TrEMBL
  ENSSSCT00070038957.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.640.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.90.1150.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Aminotransferase_I/II UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Asp_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NHTrfase_class1_PyrdxlP-BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_dom1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_major UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:396968 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene GOT2 ENTREZGENE
PANTHER ASPARTATE AMINOTRANSFERASE, MITOCHONDRIAL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11879 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Aminotran_1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS TRANSAMINASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE AA_TRANSFER_CLASS_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53383 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A480XZ96 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1URE8_PIG UniProtKB/TrEMBL
  A0A4X1UV54 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2Q7P6_PIG UniProtKB/TrEMBL
  A0A5S6HCM2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0J4E2_PIG UniProtKB/TrEMBL
  A0A8D0JEI6_PIG UniProtKB/TrEMBL
  A0A8D0R7K0_PIG UniProtKB/TrEMBL
  A0A8D1BMB0_PIG UniProtKB/TrEMBL
  A0A8D1BT83_PIG UniProtKB/TrEMBL
  A0A8D1K9C2_PIG UniProtKB/TrEMBL
  A0A8D1M3C9_PIG UniProtKB/TrEMBL
  A0A8D1M3L0_PIG UniProtKB/TrEMBL
  A0A8D1SIL3_PIG UniProtKB/TrEMBL
  AATM_PIG UniProtKB/Swiss-Prot, ENTREZGENE
  Q29230 ENTREZGENE
UniProt Secondary A0A287BH33 UniProtKB/TrEMBL
  Q29230 UniProtKB/Swiss-Prot
VGNC ID VGNC:88562 ENTREZGENE