STT3B (STT3 oligosaccharyltransferase complex catalytic subunit B) - Rat Genome Database

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Gene: STT3B (STT3 oligosaccharyltransferase complex catalytic subunit B) Sus scrofa
Analyze
Symbol: STT3B
Name: STT3 oligosaccharyltransferase complex catalytic subunit B
RGD ID: 14084465
Description: ENCODES a protein that exhibits dolichyl-diphosphooligosaccharide-protein glycotransferase activity (ortholog); INVOLVED IN protein N-linked glycosylation via asparagine (ortholog); ASSOCIATED WITH congenital disorder of glycosylation Ix (ortholog); FOUND IN oligosaccharyltransferase complex (ortholog); oligosaccharyltransferase I complex (ortholog); oligosaccharyltransferase II complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B; STT3, subunit of the oligosaccharyltransferase complex, homolog B; STT3B, catalytic subunit of the oligosaccharyltransferase complex
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1317,534,171 - 17,635,035 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11317,532,341 - 17,635,039 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21319,678,088 - 19,778,904 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
STT3B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1317,534,171 - 17,635,035 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11317,532,341 - 17,635,039 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21319,678,088 - 19,778,904 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STT3B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38331,532,925 - 31,637,616 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl331,532,638 - 31,637,616 (+)EnsemblGRCh38hg38GRCh38
GRCh37331,574,417 - 31,679,108 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36331,549,495 - 31,652,560 (+)NCBINCBI36Build 36hg18NCBI36
Celera331,512,441 - 31,615,151 (+)NCBICelera
Cytogenetic Map3p23NCBI
HuRef331,516,641 - 31,619,695 (+)NCBIHuRef
CHM1_1331,524,549 - 31,627,598 (+)NCBICHM1_1
T2T-CHM13v2.0331,535,391 - 31,640,070 (+)NCBIT2T-CHM13v2.0
Stt3b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399115,071,538 - 115,139,536 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9115,071,649 - 115,139,489 (-)EnsemblGRCm39 Ensembl
GRCm389115,242,470 - 115,310,468 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9115,242,581 - 115,310,421 (-)EnsemblGRCm38mm10GRCm38
MGSCv379115,151,699 - 115,219,539 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369115,091,279 - 115,159,119 (-)NCBIMGSCv36mm8
Celera9115,715,885 - 115,785,239 (-)NCBICelera
Cytogenetic Map9F3NCBI
cM Map967.71NCBI
Stt3b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88123,806,836 - 123,872,179 (-)NCBIGRCr8
mRatBN7.28114,928,678 - 114,994,027 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8114,917,824 - 114,994,028 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8120,542,918 - 120,608,216 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08118,741,936 - 118,807,243 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08116,585,033 - 116,650,343 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08123,303,910 - 123,370,729 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8123,293,057 - 123,371,257 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08122,604,518 - 122,668,754 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48119,680,704 - 119,747,784 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18119,690,013 - 119,767,827 (-)NCBI
Celera8114,167,159 - 114,232,088 (-)NCBICelera
Cytogenetic Map8q32NCBI
Stt3b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543022,986,762 - 23,069,383 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543022,986,673 - 23,070,923 (+)NCBIChiLan1.0ChiLan1.0
STT3B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2231,507,762 - 31,616,657 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1331,512,526 - 31,621,423 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0331,454,297 - 31,557,189 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1331,771,271 - 31,873,389 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl331,771,265 - 31,873,381 (+)Ensemblpanpan1.1panPan2
STT3B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12313,036,301 - 13,143,629 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2313,037,722 - 13,143,743 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2313,010,181 - 13,116,925 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02313,327,482 - 13,434,395 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2313,327,493 - 13,434,763 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12313,127,716 - 13,234,421 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02313,271,517 - 13,378,344 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02313,283,996 - 13,390,719 (-)NCBIUU_Cfam_GSD_1.0
Stt3b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118189,059,062 - 189,150,368 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647322,197,321 - 22,288,941 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647322,197,625 - 22,288,941 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STT3B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11576,060,670 - 76,165,415 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1576,060,406 - 76,165,468 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604149,405,224 - 49,509,806 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stt3b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247889,615,658 - 9,725,240 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247889,614,932 - 9,726,773 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in STT3B
2534 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 23 2 3 3
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000012296   ⟹   ENSSSCP00000011978
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1317,534,171 - 17,635,035 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000044659   ⟹   ENSSSCP00000050037
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1317,534,577 - 17,634,932 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000068490   ⟹   ENSSSCP00000073085
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1317,534,182 - 17,630,614 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000087643   ⟹   ENSSSCP00000074217
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1317,534,171 - 17,635,035 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000091259   ⟹   ENSSSCP00000068868
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1317,582,875 - 17,635,021 (+)Ensembl
RefSeq Acc Id: XM_003132088   ⟹   XP_003132136
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11317,533,733 - 17,635,039 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002338187
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11317,532,341 - 17,635,039 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_003132136   ⟸   XM_003132088
- UniProtKB: F1RRF2 (UniProtKB/TrEMBL),   A0A4X1UDA4 (UniProtKB/TrEMBL),   A0A4X1UFV3 (UniProtKB/TrEMBL),   A0A5G2RB33 (UniProtKB/TrEMBL),   A0A8D2C607 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000073085   ⟸   ENSSSCT00000068490
RefSeq Acc Id: ENSSSCP00000050037   ⟸   ENSSSCT00000044659
RefSeq Acc Id: ENSSSCP00000011978   ⟸   ENSSSCT00000012296
RefSeq Acc Id: ENSSSCP00000068868   ⟸   ENSSSCT00000091259
RefSeq Acc Id: ENSSSCP00000074217   ⟸   ENSSSCT00000087643
Protein Domains
Oligosaccharyl transferase STT3 N-terminal   STT3/PglB/AglB core


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000011229 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005034043 UniProtKB/TrEMBL
  ENSSSCG00015031525 UniProtKB/TrEMBL
  ENSSSCG00025022913 UniProtKB/TrEMBL
  ENSSSCG00030016612 UniProtKB/TrEMBL
  ENSSSCG00035066325 UniProtKB/TrEMBL
  ENSSSCG00040001951 UniProtKB/TrEMBL
  ENSSSCG00045007429 UniProtKB/TrEMBL
  ENSSSCG00050057486 UniProtKB/TrEMBL
  ENSSSCG00055022578 UniProtKB/TrEMBL
  ENSSSCG00060051483 UniProtKB/TrEMBL
  ENSSSCG00065036006 UniProtKB/TrEMBL
  ENSSSCG00070016403 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000012296 ENTREZGENE
  ENSSSCT00000012296.4 UniProtKB/TrEMBL
  ENSSSCT00000044659.2 UniProtKB/TrEMBL
  ENSSSCT00000068490.2 UniProtKB/TrEMBL
  ENSSSCT00000087643.1 UniProtKB/TrEMBL
  ENSSSCT00000091259.1 UniProtKB/TrEMBL
  ENSSSCT00005055162.1 UniProtKB/TrEMBL
  ENSSSCT00015041831.1 UniProtKB/TrEMBL
  ENSSSCT00015042078.1 UniProtKB/TrEMBL
  ENSSSCT00015042183.1 UniProtKB/TrEMBL
  ENSSSCT00025031126.1 UniProtKB/TrEMBL
  ENSSSCT00025031153.1 UniProtKB/TrEMBL
  ENSSSCT00030022997.1 UniProtKB/TrEMBL
  ENSSSCT00030023010.1 UniProtKB/TrEMBL
  ENSSSCT00035089340.1 UniProtKB/TrEMBL
  ENSSSCT00035089375.1 UniProtKB/TrEMBL
  ENSSSCT00040002361.1 UniProtKB/TrEMBL
  ENSSSCT00045012357.1 UniProtKB/TrEMBL
  ENSSSCT00045012401.1 UniProtKB/TrEMBL
  ENSSSCT00050078389.1 UniProtKB/TrEMBL
  ENSSSCT00050078398.1 UniProtKB/TrEMBL
  ENSSSCT00050078410.1 UniProtKB/TrEMBL
  ENSSSCT00055044363.1 UniProtKB/TrEMBL
  ENSSSCT00055044529.1 UniProtKB/TrEMBL
  ENSSSCT00060070078.1 UniProtKB/TrEMBL
  ENSSSCT00065049080.1 UniProtKB/TrEMBL
  ENSSSCT00065049088.1 UniProtKB/TrEMBL
  ENSSSCT00065049092.1 UniProtKB/TrEMBL
  ENSSSCT00070032374.1 UniProtKB/TrEMBL
  ENSSSCT00070032383.1 UniProtKB/TrEMBL
  ENSSSCT00070032391.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.12610 UniProtKB/TrEMBL
InterPro Oligo_trans_STT3 UniProtKB/TrEMBL
  STT3-PglB_core UniProtKB/TrEMBL
  STT3_N UniProtKB/TrEMBL
KEGG Report ssc:100526009 UniProtKB/TrEMBL
NCBI Gene STT3B ENTREZGENE
PANTHER DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT STT3B UniProtKB/TrEMBL
  PTHR13872 UniProtKB/TrEMBL
Pfam STT3 UniProtKB/TrEMBL
  STT3-PglB_core UniProtKB/TrEMBL
UniProt A0A287B1D4_PIG UniProtKB/TrEMBL
  A0A4X1UDA4 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UFV3 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2R7N8_PIG UniProtKB/TrEMBL
  A0A5G2RB33 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0K6A6_PIG UniProtKB/TrEMBL
  A0A8D1VVT8_PIG UniProtKB/TrEMBL
  A0A8D2C607 ENTREZGENE, UniProtKB/TrEMBL
  F1RRF2 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A5G2QVI8 UniProtKB/TrEMBL
VGNC ID VGNC:93582 ENTREZGENE