Stt3b (STT3 oligosaccharyltransferase complex catalytic subunit B) - Rat Genome Database

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Gene: Stt3b (STT3 oligosaccharyltransferase complex catalytic subunit B) Ictidomys tridecemlineatus
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Symbol: Stt3b
Name: STT3 oligosaccharyltransferase complex catalytic subunit B
RGD ID: 12693948
Description: ENCODES a protein that exhibits dolichyl-diphosphooligosaccharide-protein glycotransferase activity (inferred); glycosyltransferase activity (inferred); metal ion binding (inferred); INVOLVED IN co-translational protein modification (inferred); ERAD pathway (inferred); glycoprotein catabolic process (inferred); ASSOCIATED WITH congenital disorder of glycosylation Ix (ortholog); FOUND IN oligosaccharyltransferase complex (ortholog); oligosaccharyltransferase I complex (ortholog); oligosaccharyltransferase II complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B; STT3B, catalytic subunit of the oligosaccharyltransferase complex; STT3B, catalytic subunit of the oligosaccharyltransferase complex, transcript variant X1; STT3B, catalytic subunit of the oligosaccharyltransferase complex, transcript variant X2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118189,059,062 - 189,150,368 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647322,197,321 - 22,288,941 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647322,197,625 - 22,288,941 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Stt3b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118189,059,062 - 189,150,368 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647322,197,321 - 22,288,941 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647322,197,625 - 22,288,941 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STT3B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38331,532,925 - 31,637,616 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl331,532,638 - 31,637,616 (+)EnsemblGRCh38hg38GRCh38
GRCh37331,574,417 - 31,679,108 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36331,549,495 - 31,652,560 (+)NCBINCBI36Build 36hg18NCBI36
Celera331,512,441 - 31,615,151 (+)NCBICelera
Cytogenetic Map3p23NCBI
HuRef331,516,641 - 31,619,695 (+)NCBIHuRef
CHM1_1331,524,549 - 31,627,598 (+)NCBICHM1_1
T2T-CHM13v2.0331,535,391 - 31,640,070 (+)NCBIT2T-CHM13v2.0
Stt3b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399115,071,538 - 115,139,536 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9115,071,649 - 115,139,489 (-)EnsemblGRCm39 Ensembl
GRCm389115,242,470 - 115,310,468 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9115,242,581 - 115,310,421 (-)EnsemblGRCm38mm10GRCm38
MGSCv379115,151,699 - 115,219,539 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369115,091,279 - 115,159,119 (-)NCBIMGSCv36mm8
Celera9115,715,885 - 115,785,239 (-)NCBICelera
Cytogenetic Map9F3NCBI
cM Map967.71NCBI
Stt3b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88123,806,836 - 123,872,179 (-)NCBIGRCr8
mRatBN7.28114,928,678 - 114,994,027 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8114,917,824 - 114,994,028 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8120,542,918 - 120,608,216 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08118,741,936 - 118,807,243 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08116,585,033 - 116,650,343 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08123,303,910 - 123,370,729 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8123,293,057 - 123,371,257 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08122,604,518 - 122,668,754 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48119,680,704 - 119,747,784 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18119,690,013 - 119,767,827 (-)NCBI
Celera8114,167,159 - 114,232,088 (-)NCBICelera
Cytogenetic Map8q32NCBI
Stt3b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543022,986,762 - 23,069,383 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543022,986,673 - 23,070,923 (+)NCBIChiLan1.0ChiLan1.0
STT3B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2231,507,762 - 31,616,657 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1331,512,526 - 31,621,423 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0331,454,297 - 31,557,189 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1331,771,271 - 31,873,389 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl331,771,265 - 31,873,381 (+)Ensemblpanpan1.1panPan2
STT3B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12313,036,301 - 13,143,629 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2313,037,722 - 13,143,743 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2313,010,181 - 13,116,925 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02313,327,482 - 13,434,395 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2313,327,493 - 13,434,763 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12313,127,716 - 13,234,421 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02313,271,517 - 13,378,344 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02313,283,996 - 13,390,719 (-)NCBIUU_Cfam_GSD_1.0
STT3B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1317,534,171 - 17,635,035 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11317,532,341 - 17,635,039 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21319,678,088 - 19,778,904 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STT3B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11576,060,670 - 76,165,415 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1576,060,406 - 76,165,468 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604149,405,224 - 49,509,806 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stt3b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247889,615,658 - 9,725,240 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247889,614,932 - 9,726,773 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000013619   ⟹   ENSSTOP00000012203
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647322,197,321 - 22,288,941 (+)Ensembl
RefSeq Acc Id: XM_005317313   ⟹   XP_005317370
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118189,059,065 - 189,150,368 (+)NCBI
SpeTri2.0NW_00493647322,197,625 - 22,288,941 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021731808   ⟹   XP_021587483
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118189,059,744 - 189,150,368 (+)NCBI
SpeTri2.0NW_00493647322,198,228 - 22,288,933 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040289908   ⟹   XP_040145842
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118189,059,063 - 189,150,368 (+)NCBI
RefSeq Acc Id: XM_040289909   ⟹   XP_040145843
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118189,059,062 - 189,150,368 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005317370 (Get FASTA)   NCBI Sequence Viewer  
  XP_021587483 (Get FASTA)   NCBI Sequence Viewer  
  XP_040145842 (Get FASTA)   NCBI Sequence Viewer  
  XP_040145843 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000012203.3
GenBank Protein KAG3279548 (Get FASTA)   NCBI Sequence Viewer  
  KAG3279549 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005317370   ⟸   XM_005317313
- Peptide Label: isoform X1
- UniProtKB: I3MLC5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021587483   ⟸   XM_021731808
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_040145843   ⟸   XM_040289909
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040145842   ⟸   XM_040289908
- Peptide Label: isoform X2
RefSeq Acc Id: ENSSTOP00000012203   ⟸   ENSSTOT00000013619
Protein Domains
Oligosaccharyl transferase STT3 N-terminal   STT3/PglB/AglB core


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000013598 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000013619.3 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.12610 UniProtKB/TrEMBL
InterPro Oligo_trans_STT3 UniProtKB/TrEMBL
  STT3-PglB_core UniProtKB/TrEMBL
  STT3_N UniProtKB/TrEMBL
NCBI Gene Stt3b ENTREZGENE
PANTHER DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT STT3B UniProtKB/TrEMBL
  PTHR13872 UniProtKB/TrEMBL
Pfam STT3 UniProtKB/TrEMBL
  STT3-PglB_core UniProtKB/TrEMBL
UniProt I3MLC5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-29 Stt3b  STT3 oligosaccharyltransferase complex catalytic subunit B    STT3B, catalytic subunit of the oligosaccharyltransferase complex  Symbol and/or name change 5135510 APPROVED