LPAR1 (lysophosphatidic acid receptor 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: LPAR1 (lysophosphatidic acid receptor 1) Sus scrofa
Analyze
Symbol: LPAR1
Name: lysophosphatidic acid receptor 1
RGD ID: 14052850
Description: ENCODES a protein that exhibits G-protein alpha-subunit binding (ortholog); lysophosphatidic acid binding (ortholog); PDZ domain binding (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); bleb assembly (ortholog); calmodulin dependent kinase signaling pathway (ortholog); PARTICIPATES IN G protein mediated signaling pathway via Galphaq family; ASSOCIATED WITH acute myeloid leukemia (ortholog); Breast Neoplasms (ortholog); Colorectal Neoplasms (ortholog); FOUND IN dendritic shaft (ortholog); dendritic spine (ortholog); endocytic vesicle (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1251,811,584 - 251,979,159 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11251,811,583 - 251,979,828 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21282,512,052 - 282,513,164 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.21282,656,365 - 282,809,534 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LPAR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1251,811,584 - 251,979,159 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11251,811,583 - 251,979,828 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21282,512,052 - 282,513,164 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.21282,656,365 - 282,809,534 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LPAR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389110,873,263 - 111,038,998 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9110,873,263 - 111,038,470 (-)EnsemblGRCh38hg38GRCh38
GRCh379113,635,543 - 113,801,278 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369112,675,875 - 112,840,186 (-)NCBINCBI36Build 36hg18NCBI36
Build 349110,715,610 - 110,879,920NCBI
Celera984,135,330 - 84,299,600 (-)NCBICelera
Cytogenetic Map9q31.3NCBI
HuRef983,234,370 - 83,398,725 (-)NCBIHuRef
CHM1_19113,782,492 - 113,946,810 (-)NCBICHM1_1
T2T-CHM13v2.09123,044,905 - 123,210,649 (-)NCBIT2T-CHM13v2.0
Lpar1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39458,435,252 - 58,554,601 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl458,435,255 - 58,553,898 (-)EnsemblGRCm39 Ensembl
GRCm38458,435,252 - 58,554,027 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl458,435,255 - 58,553,898 (-)EnsemblGRCm38mm10GRCm38
MGSCv37458,448,124 - 58,566,363 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36458,529,038 - 58,647,573 (-)NCBIMGSCv36mm8
Celera458,350,845 - 58,469,154 (-)NCBICelera
Cytogenetic Map4B3NCBI
cM Map432.2NCBI
Lpar1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8578,024,139 - 78,147,071 (-)NCBIGRCr8
mRatBN7.2573,229,047 - 73,347,874 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl573,229,625 - 73,369,895 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx575,113,517 - 75,231,865 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0576,935,105 - 77,053,463 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0576,907,241 - 77,025,601 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0575,557,038 - 75,678,067 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl575,557,042 - 75,676,584 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0579,707,131 - 79,825,313 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4576,449,470 - 76,571,458 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1576,454,582 - 76,576,571 (-)NCBI
Celera572,053,065 - 72,170,436 (-)NCBICelera
Cytogenetic Map5q24NCBI
Lpar1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541916,191,244 - 16,325,602 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541916,190,109 - 16,324,702 (+)NCBIChiLan1.0ChiLan1.0
LPAR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21128,381,731 - 28,547,212 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1928,384,283 - 28,549,576 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0982,013,960 - 82,179,227 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19110,179,600 - 110,344,103 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9110,179,600 - 110,279,038 (-)Ensemblpanpan1.1panPan2
LPAR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11165,690,806 - 65,822,166 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1165,692,973 - 65,822,312 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1164,093,455 - 64,225,618 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01166,821,266 - 66,953,345 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1166,821,279 - 66,953,395 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11165,340,113 - 65,471,961 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01165,362,357 - 65,494,286 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01166,052,210 - 66,184,225 (-)NCBIUU_Cfam_GSD_1.0
Lpar1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947180,933,634 - 181,079,775 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365592,259,420 - 2,332,806 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365592,187,791 - 2,331,587 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LPAR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11228,502,717 - 28,669,581 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1228,503,354 - 28,669,795 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603514,094,822 - 14,262,752 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lpar1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624758519,249 - 669,471 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624758518,070 - 668,915 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in LPAR1
7344 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 2 4 13 3
Low 9 2 3 1 2 10 2 1
Below cutoff 1

Sequence


RefSeq Acc Id: ENSSSCT00000047223   ⟹   ENSSSCP00000042464
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1251,813,315 - 251,977,847 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000047545   ⟹   ENSSSCP00000048127
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1251,811,584 - 251,979,159 (-)Ensembl
RefSeq Acc Id: NM_001244357   ⟹   NP_001231286
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11251,812,850 - 251,978,185 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021069049   ⟹   XP_020924708
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11251,811,583 - 251,978,116 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021069121   ⟹   XP_020924780
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11251,811,583 - 251,979,828 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021069191   ⟹   XP_020924850
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11251,811,587 - 251,978,764 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021069240   ⟹   XP_020924899
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11251,811,583 - 251,933,857 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021069292   ⟹   XP_020924951
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11251,811,583 - 251,979,648 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020924780   ⟸   XM_021069121
- Peptide Label: isoform X1
- UniProtKB: F1SNC8 (UniProtKB/TrEMBL),   A0A8D1EY78 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020924951   ⟸   XM_021069292
- Peptide Label: isoform X1
- UniProtKB: F1SNC8 (UniProtKB/TrEMBL),   A0A8D1EY78 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020924708   ⟸   XM_021069049
- Peptide Label: isoform X1
- UniProtKB: F1SNC8 (UniProtKB/TrEMBL),   A0A8D1EY78 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020924899   ⟸   XM_021069240
- Peptide Label: isoform X1
- UniProtKB: F1SNC8 (UniProtKB/TrEMBL),   A0A8D1EY78 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020924850   ⟸   XM_021069191
- Peptide Label: isoform X1
- UniProtKB: F1SNC8 (UniProtKB/TrEMBL),   A0A8D1EY78 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001231286   ⟸   NM_001244357
- UniProtKB: A0A8D1EY78 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000042464   ⟸   ENSSSCT00000047223
RefSeq Acc Id: ENSSSCP00000048127   ⟸   ENSSSCT00000047545

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000005457 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005015740 UniProtKB/TrEMBL
  ENSSSCG00030011730 UniProtKB/TrEMBL
  ENSSSCG00040049249 UniProtKB/TrEMBL
  ENSSSCG00045019569 UniProtKB/TrEMBL
  ENSSSCG00060042368 UniProtKB/TrEMBL
  ENSSSCG00070022609 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000047545 ENTREZGENE
  ENSSSCT00000047545.2 UniProtKB/TrEMBL
  ENSSSCT00005024708.1 UniProtKB/TrEMBL
  ENSSSCT00005024721.1 UniProtKB/TrEMBL
  ENSSSCT00005024727.1 UniProtKB/TrEMBL
  ENSSSCT00005024738.1 UniProtKB/TrEMBL
  ENSSSCT00030016087.1 UniProtKB/TrEMBL
  ENSSSCT00040066462.1 UniProtKB/TrEMBL
  ENSSSCT00045033365.1 UniProtKB/TrEMBL
  ENSSSCT00060057447.1 UniProtKB/TrEMBL
  ENSSSCT00070044942.1 UniProtKB/TrEMBL
  ENSSSCT00070044952.1 UniProtKB/TrEMBL
  ENSSSCT00070044956.1 UniProtKB/TrEMBL
  ENSSSCT00070044962.1 UniProtKB/TrEMBL
  ENSSSCT00070044967.1 UniProtKB/TrEMBL
  ENSSSCT00070044970.1 UniProtKB/TrEMBL
  ENSSSCT00070044975.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  LPA_rcpt UniProtKB/TrEMBL
  LPA_rcpt_EDG2 UniProtKB/TrEMBL
NCBI Gene LPAR1 ENTREZGENE
PANTHER G-PROTEIN COUPLED RECEPTOR UniProtKB/TrEMBL
  LYSOPHOSPHATIDIC ACID RECEPTOR 1 UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
PRINTS EDG2RECEPTOR UniProtKB/TrEMBL
  GPCRRHODOPSN UniProtKB/TrEMBL
  LPARECEPTOR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A480SNZ7_PIG UniProtKB/TrEMBL
  A0A4X1V9C6_PIG UniProtKB/TrEMBL
  A0A8D1EY78 ENTREZGENE, UniProtKB/TrEMBL
  F1SNC8 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1VAP1 UniProtKB/TrEMBL
VGNC ID VGNC:103117 ENTREZGENE