WASF3 (WASP family member 3) - Rat Genome Database

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Gene: WASF3 (WASP family member 3) Sus scrofa
Analyze
Symbol: WASF3
Name: WASP family member 3
RGD ID: 14002148
Description: ENCODES a protein that exhibits actin binding (inferred); Arp2/3 complex binding (inferred); protein kinase A regulatory subunit binding (inferred); INVOLVED IN lamellipodium assembly (ortholog); oligodendrocyte development (ortholog); positive regulation of myelination (ortholog); ASSOCIATED WITH juvenile rheumatoid arthritis (ortholog); Prostatic Neoplasms (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: WAS protein family member 3; wiskott-Aldrich syndrome protein family member 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl114,261,177 - 4,366,253 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1114,261,121 - 4,366,258 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2113,736,220 - 3,791,727 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
WASF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl114,261,177 - 4,366,253 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1114,261,121 - 4,366,258 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2113,736,220 - 3,791,727 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WASF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381326,539,139 - 26,688,948 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1326,557,683 - 26,688,948 (+)EnsemblGRCh38hg38GRCh38
GRCh371327,131,820 - 27,263,085 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361326,029,840 - 26,161,082 (+)NCBINCBI36Build 36hg18NCBI36
Build 341326,029,886 - 26,161,063NCBI
Celera138,256,077 - 8,332,052 (+)NCBICelera
Cytogenetic Map13q12.13NCBI
HuRef137,955,351 - 8,086,464 (+)NCBIHuRef
CHM1_11327,099,816 - 27,231,081 (+)NCBICHM1_1
T2T-CHM13v2.01325,753,035 - 25,902,898 (+)NCBIT2T-CHM13v2.0
Wasf3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395146,317,411 - 146,410,425 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5146,321,795 - 146,410,425 (+)EnsemblGRCm39 Ensembl
GRCm385146,385,006 - 146,473,615 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5146,384,985 - 146,473,615 (+)EnsemblGRCm38mm10GRCm38
MGSCv375147,196,582 - 147,282,701 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365146,689,240 - 146,774,650 (+)NCBIMGSCv36mm8
Celera5144,372,570 - 144,458,483 (+)NCBICelera
Cytogenetic Map5G3NCBI
cM Map585.23NCBI
Wasf3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81213,675,642 - 13,774,648 (-)NCBIGRCr8
mRatBN7.2128,563,805 - 8,660,799 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl128,562,062 - 8,660,751 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01210,297,896 - 10,391,014 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1210,298,555 - 10,391,270 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01212,401,989 - 12,493,810 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1210,379,274 - 10,474,931 (-)NCBICelera
Cytogenetic Map12p11NCBI
Wasf3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554976,102,909 - 6,190,770 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554976,100,633 - 6,190,639 (+)NCBIChiLan1.0ChiLan1.0
WASF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21426,156,139 - 26,287,412 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11317,264,980 - 17,396,221 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0137,849,687 - 7,980,979 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11326,250,171 - 26,328,553 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1326,250,171 - 26,328,553 (+)Ensemblpanpan1.1panPan2
WASF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12512,804,485 - 12,881,988 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2512,805,431 - 12,877,770 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2512,875,143 - 13,008,318 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02512,944,371 - 13,077,673 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2512,944,371 - 13,077,678 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12512,830,485 - 12,963,635 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02512,822,254 - 12,955,911 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02512,873,760 - 13,006,959 (-)NCBIUU_Cfam_GSD_1.0
Wasf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945115,180,691 - 115,300,651 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936948345,899 - 465,930 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936948345,942 - 465,323 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WASF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.135,805,115 - 5,934,764 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl35,889,263 - 5,931,662 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605738,489,195 - 38,621,738 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wasf3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477611,864,652 - 11,904,295 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477611,863,880 - 11,985,087 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in WASF3
6019 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 13
Low 9 4 2 5 2 10 2 3 1
Below cutoff 1

Sequence


RefSeq Acc Id: ENSSSCT00000010188   ⟹   ENSSSCP00000009922
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl114,261,177 - 4,366,253 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000085283   ⟹   ENSSSCP00000067667
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl114,261,177 - 4,366,253 (+)Ensembl
RefSeq Acc Id: XM_021065503   ⟹   XP_020921162
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1114,284,561 - 4,363,618 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021065504   ⟹   XP_020921163
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1114,261,136 - 4,363,618 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021065505   ⟹   XP_020921164
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1114,261,136 - 4,363,618 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021065506   ⟹   XP_020921165
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1114,299,212 - 4,363,618 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021065507   ⟹   XP_020921166
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1114,261,148 - 4,366,258 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021065508   ⟹   XP_020921167
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1114,284,561 - 4,363,618 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021065509   ⟹   XP_020921168
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1114,261,130 - 4,363,618 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021065510   ⟹   XP_020921169
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1114,261,148 - 4,366,258 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021065511   ⟹   XP_020921170
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1114,261,121 - 4,366,258 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020921170   ⟸   XM_021065511
- Peptide Label: isoform X3
- UniProtKB: A0A8D1AVR4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020921168   ⟸   XM_021065509
- Peptide Label: isoform X1
- UniProtKB: A0A8D1D8C3 (UniProtKB/TrEMBL),   F1RTK2 (UniProtKB/TrEMBL),   A0A8D1AVR4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020921163   ⟸   XM_021065504
- Peptide Label: isoform X1
- UniProtKB: A0A8D1D8C3 (UniProtKB/TrEMBL),   F1RTK2 (UniProtKB/TrEMBL),   A0A8D1AVR4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020921164   ⟸   XM_021065505
- Peptide Label: isoform X1
- UniProtKB: A0A8D1D8C3 (UniProtKB/TrEMBL),   F1RTK2 (UniProtKB/TrEMBL),   A0A8D1AVR4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020921166   ⟸   XM_021065507
- Peptide Label: isoform X1
- UniProtKB: A0A8D1D8C3 (UniProtKB/TrEMBL),   F1RTK2 (UniProtKB/TrEMBL),   A0A8D1AVR4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020921169   ⟸   XM_021065510
- Peptide Label: isoform X2
- UniProtKB: A0A480KT11 (UniProtKB/TrEMBL),   A0A8D1RPI3 (UniProtKB/TrEMBL),   A0A8D1AQZ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020921162   ⟸   XM_021065503
- Peptide Label: isoform X1
- UniProtKB: A0A8D1D8C3 (UniProtKB/TrEMBL),   F1RTK2 (UniProtKB/TrEMBL),   A0A8D1AVR4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020921167   ⟸   XM_021065508
- Peptide Label: isoform X1
- UniProtKB: A0A8D1D8C3 (UniProtKB/TrEMBL),   F1RTK2 (UniProtKB/TrEMBL),   A0A8D1AVR4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020921165   ⟸   XM_021065506
- Peptide Label: isoform X1
- UniProtKB: A0A8D1D8C3 (UniProtKB/TrEMBL),   F1RTK2 (UniProtKB/TrEMBL),   A0A8D1AVR4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000009922   ⟸   ENSSSCT00000010188
RefSeq Acc Id: ENSSSCP00000067667   ⟸   ENSSSCT00000085283
Protein Domains
WH2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009300 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025049582 UniProtKB/TrEMBL
  ENSSSCG00035067578 UniProtKB/TrEMBL
  ENSSSCG00040004786 UniProtKB/TrEMBL
  ENSSSCG00045016567 UniProtKB/TrEMBL
  ENSSSCG00050014193 UniProtKB/TrEMBL
  ENSSSCG00055023538 UniProtKB/TrEMBL
  ENSSSCG00060030833 UniProtKB/TrEMBL
  ENSSSCG00065061680 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010188 ENTREZGENE
  ENSSSCT00000010188.5 UniProtKB/TrEMBL
  ENSSSCT00000085283 ENTREZGENE
  ENSSSCT00000085283.2 UniProtKB/TrEMBL
  ENSSSCT00025067596.1 UniProtKB/TrEMBL
  ENSSSCT00025067702.1 UniProtKB/TrEMBL
  ENSSSCT00035091202.1 UniProtKB/TrEMBL
  ENSSSCT00035091234.1 UniProtKB/TrEMBL
  ENSSSCT00040006374.1 UniProtKB/TrEMBL
  ENSSSCT00040006378.1 UniProtKB/TrEMBL
  ENSSSCT00045028178.1 UniProtKB/TrEMBL
  ENSSSCT00045028238.1 UniProtKB/TrEMBL
  ENSSSCT00050019178.1 UniProtKB/TrEMBL
  ENSSSCT00050019191.1 UniProtKB/TrEMBL
  ENSSSCT00055046369.1 UniProtKB/TrEMBL
  ENSSSCT00055046477.1 UniProtKB/TrEMBL
  ENSSSCT00060041671.1 UniProtKB/TrEMBL
  ENSSSCT00060041678.1 UniProtKB/TrEMBL
  ENSSSCT00065084574.1 UniProtKB/TrEMBL
  ENSSSCT00065084583.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.340 UniProtKB/TrEMBL
  6.10.280.150 UniProtKB/TrEMBL
InterPro SCAR/WAVE_fam UniProtKB/TrEMBL
  WH2_dom UniProtKB/TrEMBL
NCBI Gene WASF3 ENTREZGENE
PANTHER PTHR12902 UniProtKB/TrEMBL
  WISKOTT-ALDRICH SYNDROME PROTEIN FAMILY MEMBER 3 UniProtKB/TrEMBL
Pfam WH2 UniProtKB/TrEMBL
PROSITE WH2 UniProtKB/TrEMBL
SMART WH2 UniProtKB/TrEMBL
UniProt A0A480KT11 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1AQZ8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1AVR4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1D8C3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1RPI3 ENTREZGENE, UniProtKB/TrEMBL
  F1RTK2 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:94894 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-02-19 WASF3  WASP family member 3    WAS protein family member 3  Symbol and/or name change 5135510 APPROVED