TRPM4 (transient receptor potential cation channel subfamily M member 4) - Rat Genome Database

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Gene: TRPM4 (transient receptor potential cation channel subfamily M member 4) Sus scrofa
Analyze
Symbol: TRPM4
Name: transient receptor potential cation channel subfamily M member 4
RGD ID: 13983784
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN calcium ion transport (ortholog); long-term memory (ortholog); negative regulation of bone mineralization (ortholog); ASSOCIATED WITH arrhythmogenic right ventricular cardiomyopathy (ortholog); atrioventricular block (ortholog); Bradycardia (ortholog); FOUND IN neuronal cell body (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl654,342,784 - 54,377,155 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1654,342,774 - 54,377,557 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2649,975,735 - 49,985,615 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
calcium ion transmembrane transport  (IBA,IEA)
calcium ion transport  (IEA,ISO)
calcium-mediated signaling  (IEA)
cellular response to ATP  (IEA)
dendritic cell chemotaxis  (IEA)
inorganic cation transmembrane transport  (IEA)
long-term memory  (ISO)
membrane depolarization during AV node cell action potential  (IEA)
membrane depolarization during bundle of His cell action potential  (IEA)
membrane depolarization during Purkinje myocyte cell action potential  (IEA)
monoatomic ion transmembrane transport  (IEA)
monoatomic ion transport  (IEA)
negative regulation of bone mineralization  (ISO)
negative regulation of osteoblast differentiation  (ISO)
positive regulation of adipose tissue development  (ISO)
positive regulation of atrial cardiac muscle cell action potential  (ISO)
positive regulation of canonical Wnt signaling pathway  (IEA)
positive regulation of cell population proliferation  (IEA)
positive regulation of cytosolic calcium ion concentration  (ISO)
positive regulation of fat cell differentiation  (ISO)
positive regulation of heart rate  (ISO)
positive regulation of insulin secretion involved in cellular response to glucose stimulus  (ISO)
positive regulation of regulation of vascular associated smooth muscle cell membrane depolarization  (ISO)
positive regulation of vasoconstriction  (ISO)
protein homotetramerization  (IEA)
protein sumoylation  (IEA)
regulation of heart rate by cardiac conduction  (IEA)
regulation of T cell cytokine production  (IEA)
regulation of ventricular cardiac muscle cell action potential  (IEA)
sodium ion import across plasma membrane  (IEA)
transmembrane transport  (IEA)

Cellular Component

References
Additional References at PubMed
PMID:14681463   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TRPM4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl654,342,784 - 54,377,155 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1654,342,774 - 54,377,557 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2649,975,735 - 49,985,615 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRPM4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381949,157,792 - 49,211,836 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1949,157,741 - 49,211,836 (+)EnsemblGRCh38hg38GRCh38
GRCh371949,661,049 - 49,715,093 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361954,352,864 - 54,406,905 (+)NCBINCBI36Build 36hg18NCBI36
Build 341954,352,863 - 54,406,903NCBI
Celera1946,527,963 - 46,581,978 (+)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1946,037,071 - 46,092,109 (+)NCBIHuRef
CHM1_11949,662,673 - 49,716,555 (+)NCBICHM1_1
T2T-CHM13v2.01952,152,347 - 52,209,191 (+)NCBIT2T-CHM13v2.0
Trpm4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,952,579 - 44,983,495 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,952,056 - 44,983,204 (-)EnsemblGRCm39 Ensembl
GRCm38745,303,155 - 45,334,071 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,302,632 - 45,333,780 (-)EnsemblGRCm38mm10GRCm38
MGSCv37752,558,525 - 52,589,150 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36745,170,674 - 45,201,784 (-)NCBIMGSCv36mm8
Celera740,759,067 - 40,790,038 (-)NCBICelera
Cytogenetic Map7B3NCBI
cM Map729.24NCBI
Trpm4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81104,918,462 - 104,949,453 (-)NCBIGRCr8
mRatBN7.2195,781,805 - 95,812,095 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl195,782,000 - 95,812,532 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1101,167,413 - 101,197,191 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01109,640,086 - 109,669,864 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01102,930,482 - 102,960,268 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01101,293,300 - 101,323,484 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,293,409 - 101,323,960 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01102,357,043 - 102,387,010 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4195,773,485 - 95,803,542 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1195,851,812 - 95,863,602 (-)NCBI
Celera190,039,848 - 90,063,911 (-)NCBICelera
Cytogenetic Map1q22NCBI
Trpm4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555591,546,365 - 1,581,712 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555591,539,036 - 1,581,800 (-)NCBIChiLan1.0ChiLan1.0
TRPM4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22055,272,183 - 55,328,155 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11957,191,713 - 57,248,153 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01946,168,301 - 46,224,726 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11955,095,029 - 55,150,464 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1955,095,029 - 55,150,464 (+)Ensemblpanpan1.1panPan2
TRPM4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11107,261,760 - 107,304,157 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1107,261,756 - 107,303,346 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1106,849,462 - 106,891,183 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01107,786,342 - 107,828,325 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1107,678,345 - 107,828,249 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11107,454,730 - 107,496,450 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01107,100,989 - 107,142,706 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01107,938,110 - 107,978,274 (-)NCBIUU_Cfam_GSD_1.0
Trpm4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934921,474,889 - 21,506,283 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366643,093,367 - 3,124,117 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366643,093,258 - 3,124,473 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRPM4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1642,379,534 - 42,424,721 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl642,379,659 - 42,424,146 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607322,272,664 - 22,341,345 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trpm4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248324,902,659 - 4,936,926 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248324,902,335 - 4,937,806 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TRPM4
243 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 7 1
Low 3 4 3 5 2 23 2 2 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000022953   ⟹   ENSSSCP00000021079
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl654,342,784 - 54,377,155 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000065905   ⟹   ENSSSCP00000047568
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl654,342,784 - 54,377,155 (+)Ensembl
RefSeq Acc Id: XM_021094710   ⟹   XP_020950369
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1654,342,774 - 54,377,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021094711   ⟹   XP_020950370
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1654,342,811 - 54,377,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021094712   ⟹   XP_020950371
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1654,342,774 - 54,377,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021094713   ⟹   XP_020950372
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1654,342,843 - 54,377,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021094714   ⟹   XP_020950373
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1654,342,784 - 54,377,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021094716   ⟹   XP_020950375
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1654,342,827 - 54,377,557 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021094717   ⟹   XP_020950376
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1654,342,811 - 54,377,557 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020950369   ⟸   XM_021094710
- Peptide Label: isoform X1
- UniProtKB: A0A8D1HIM1 (UniProtKB/TrEMBL),   A0A480K0W2 (UniProtKB/TrEMBL),   A0A480JZY5 (UniProtKB/TrEMBL),   A0A480MY42 (UniProtKB/TrEMBL),   A0A4X1W0Z4 (UniProtKB/TrEMBL),   A0A8D1BMI1 (UniProtKB/TrEMBL),   A0A8D1MKE8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020950371   ⟸   XM_021094712
- Peptide Label: isoform X3
- UniProtKB: A0A480JZY5 (UniProtKB/TrEMBL),   A0A480MY42 (UniProtKB/TrEMBL),   A0A4X1W0Z4 (UniProtKB/TrEMBL),   A0A8D1BMI1 (UniProtKB/TrEMBL),   A0A8D1MKE8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020950373   ⟸   XM_021094714
- Peptide Label: isoform X5
- UniProtKB: A0A481CVA8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020950370   ⟸   XM_021094711
- Peptide Label: isoform X2
- UniProtKB: A0A8D0T028 (UniProtKB/TrEMBL),   A0A8D0MQK6 (UniProtKB/TrEMBL),   A0A8D1BD94 (UniProtKB/TrEMBL),   A0A8D1MKN7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020950376   ⟸   XM_021094717
- Peptide Label: isoform X7
- UniProtKB: A0A481CVA8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020950375   ⟸   XM_021094716
- Peptide Label: isoform X6
- UniProtKB: A0A481D3G9 (UniProtKB/TrEMBL),   A0A481CVA8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020950372   ⟸   XM_021094713
- Peptide Label: isoform X4
- UniProtKB: A0A8D0MQK6 (UniProtKB/TrEMBL),   A0A8D1BD94 (UniProtKB/TrEMBL),   A0A8D1MKN7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000047568   ⟸   ENSSSCT00000065905
RefSeq Acc Id: ENSSSCP00000021079   ⟸   ENSSSCT00000022953
Protein Domains
Ion transport   TRPM SLOG


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000022672 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015013511 UniProtKB/TrEMBL
  ENSSSCG00025065096 UniProtKB/TrEMBL
  ENSSSCG00030063914 UniProtKB/TrEMBL
  ENSSSCG00035080809 UniProtKB/TrEMBL
  ENSSSCG00040015324 UniProtKB/TrEMBL
  ENSSSCG00045013281 UniProtKB/TrEMBL
  ENSSSCG00050041728 UniProtKB/TrEMBL
  ENSSSCG00055007452 UniProtKB/TrEMBL
  ENSSSCG00070027699 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000022953.4 UniProtKB/TrEMBL
  ENSSSCT00000065905 ENTREZGENE
  ENSSSCT00000065905.3 UniProtKB/TrEMBL
  ENSSSCT00015018235.1 UniProtKB/TrEMBL
  ENSSSCT00015018388.1 UniProtKB/TrEMBL
  ENSSSCT00015018532.1 UniProtKB/TrEMBL
  ENSSSCT00025089716.1 UniProtKB/TrEMBL
  ENSSSCT00025089996.1 UniProtKB/TrEMBL
  ENSSSCT00025090300.1 UniProtKB/TrEMBL
  ENSSSCT00030089412.1 UniProtKB/TrEMBL
  ENSSSCT00030089441.1 UniProtKB/TrEMBL
  ENSSSCT00030089473.1 UniProtKB/TrEMBL
  ENSSSCT00035110841.1 UniProtKB/TrEMBL
  ENSSSCT00035110847.1 UniProtKB/TrEMBL
  ENSSSCT00035110851.1 UniProtKB/TrEMBL
  ENSSSCT00040020651.1 UniProtKB/TrEMBL
  ENSSSCT00040020674.1 UniProtKB/TrEMBL
  ENSSSCT00040020700.1 UniProtKB/TrEMBL
  ENSSSCT00040020728.1 UniProtKB/TrEMBL
  ENSSSCT00045022633.1 UniProtKB/TrEMBL
  ENSSSCT00045022698.1 UniProtKB/TrEMBL
  ENSSSCT00045022730.1 UniProtKB/TrEMBL
  ENSSSCT00045022777.1 UniProtKB/TrEMBL
  ENSSSCT00050056643.1 UniProtKB/TrEMBL
  ENSSSCT00050056647.1 UniProtKB/TrEMBL
  ENSSSCT00055014486.1 UniProtKB/TrEMBL
  ENSSSCT00055014580.1 UniProtKB/TrEMBL
  ENSSSCT00055014648.1 UniProtKB/TrEMBL
  ENSSSCT00070055558.1 UniProtKB/TrEMBL
InterPro Ion_trans_dom UniProtKB/TrEMBL
  TRPM_SLOG UniProtKB/TrEMBL
NCBI Gene TRPM4 ENTREZGENE
PANTHER PTHR13800:SF6 UniProtKB/TrEMBL
  TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 UniProtKB/TrEMBL
Pfam Ion_trans UniProtKB/TrEMBL
  LSDAT_euk UniProtKB/TrEMBL
Superfamily-SCOP Pseudo ankyrin repeat-like UniProtKB/TrEMBL
UniProt A0A287AUN9_PIG UniProtKB/TrEMBL
  A0A480JZY5 ENTREZGENE, UniProtKB/TrEMBL
  A0A480K0W2 ENTREZGENE, UniProtKB/TrEMBL
  A0A480MY42 ENTREZGENE, UniProtKB/TrEMBL
  A0A481CVA8 ENTREZGENE, UniProtKB/TrEMBL
  A0A481D3G9 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W0Z4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0MQK6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0T028 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0T0A6_PIG UniProtKB/TrEMBL
  A0A8D1BD94 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1BMI1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1BPZ5_PIG UniProtKB/TrEMBL
  A0A8D1DLP9_PIG UniProtKB/TrEMBL
  A0A8D1HFG4_PIG UniProtKB/TrEMBL
  A0A8D1HIM1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1MKE8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1MKN7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1PTM3_PIG UniProtKB/TrEMBL
  I3LAL1_PIG UniProtKB/TrEMBL
VGNC ID VGNC:94468 ENTREZGENE