KLKB1 (kallikrein B1) - Rat Genome Database

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Gene: KLKB1 (kallikrein B1) Sus scrofa
Analyze
Symbol: KLKB1
Name: kallikrein B1
RGD ID: 13951073
Description: ENCODES a protein that exhibits serine-type endopeptidase activity (inferred); serine-type peptidase activity (inferred); INVOLVED IN liver regeneration (ortholog); PARTICIPATES IN acenocoumarol pharmacodynamics pathway; alteplase pharmacodynamics pathway; aminocaproic acid pharmacodynamics pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); Bietti crystalline corneoretinal dystrophy (ortholog); FOUND IN extracellular space (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: KLK3; plasma kallikrein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1547,071,556 - 47,103,622 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11547,071,581 - 47,100,272 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21553,912,808 - 53,941,527 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10954859   PMID:14681463   PMID:22301074  


Genomics

Comparative Map Data
KLKB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1547,071,556 - 47,103,622 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11547,071,581 - 47,100,272 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21553,912,808 - 53,941,527 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KLKB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384186,210,853 - 186,258,471 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4186,226,438 - 186,258,471 (+)EnsemblGRCh38hg38GRCh38
GRCh374187,148,661 - 187,179,625 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364187,385,666 - 187,416,619 (+)NCBINCBI36Build 36hg18NCBI36
Build 344187,523,820 - 187,554,773NCBI
Celera4184,471,184 - 184,503,982 (+)NCBICelera
Cytogenetic Map4q35.2NCBI
HuRef4182,900,717 - 182,930,974 (+)NCBIHuRef
CHM1_14187,125,087 - 187,156,065 (+)NCBICHM1_1
T2T-CHM13v2.04189,554,481 - 189,598,453 (+)NCBIT2T-CHM13v2.0
Klkb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39845,719,725 - 45,747,872 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl845,719,726 - 45,747,896 (-)EnsemblGRCm39 Ensembl
GRCm38845,266,688 - 45,294,835 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl845,266,689 - 45,294,859 (-)EnsemblGRCm38mm10GRCm38
MGSCv37846,354,796 - 46,380,189 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36846,768,488 - 46,807,283 (-)NCBIMGSCv36mm8
Celera847,956,504 - 47,981,825 (-)NCBICelera
Cytogenetic Map8B1.1NCBI
cM Map825.17NCBI
Klkb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81653,690,180 - 53,714,570 (+)NCBIGRCr8
mRatBN7.21646,958,634 - 46,982,054 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1646,958,707 - 46,982,053 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1652,351,649 - 52,374,892 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01655,728,965 - 55,752,309 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01650,991,039 - 51,014,284 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01650,151,127 - 50,175,407 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1650,152,008 - 50,175,458 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01649,874,943 - 49,898,364 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41650,248,935 - 50,272,279 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11650,248,906 - 50,272,347 (+)NCBI
Celera1644,949,240 - 44,972,564 (+)NCBICelera
Cytogenetic Map16q11NCBI
Klkb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540322,833,982 - 22,856,389 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540322,835,544 - 22,856,355 (-)NCBIChiLan1.0ChiLan1.0
KLKB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23183,957,685 - 184,001,315 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14184,307,425 - 184,350,153 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04178,398,359 - 178,429,448 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14190,604,901 - 190,636,300 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4190,604,901 - 190,636,300 (+)Ensemblpanpan1.1panPan2
KLKB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11644,492,735 - 44,517,854 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1644,469,632 - 44,540,292 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1644,979,694 - 45,003,202 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01646,683,089 - 46,736,876 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1646,706,236 - 46,730,702 (-)EnsemblROS_Cfam_1.0 Ensembl
ROS_Cfam_1.0 Ensembl1646,683,106 - 46,700,880 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11644,675,226 - 44,698,533 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01645,288,025 - 45,311,430 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01645,418,960 - 45,442,647 (-)NCBIUU_Cfam_GSD_1.0
Klkb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494334,872,449 - 34,882,567 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365543,228,735 - 3,256,710 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365543,227,395 - 3,256,710 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KLKB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17132,143,514 - 132,173,189 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7132,144,420 - 132,173,187 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037112,465,874 - 112,497,290 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Klkb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476917,067,342 - 17,087,408 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476917,066,055 - 17,088,587 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in KLKB1
353 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system hemolymphoid system nervous system
High
Medium
Low 1
Below cutoff 1 2 2

Sequence


RefSeq Acc Id: ENSSSCT00000017203   ⟹   ENSSSCP00000016742
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1547,071,556 - 47,103,622 (+)Ensembl
RefSeq Acc Id: NM_214074   ⟹   NP_999239
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11547,071,581 - 47,100,272 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_999239 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD42695 (Get FASTA)   NCBI Sequence Viewer  
  BAA37147 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000016742
  ENSSSCP00000016742.3
  ENSSSCP00005037031.1
  ENSSSCP00025039179.1
  ENSSSCP00045025721.1
  ENSSSCP00065008386.1
  ENSSSCP00070046149.1
RefSeq Acc Id: NP_999239   ⟸   NM_214074
- UniProtKB: O97506 (UniProtKB/TrEMBL),   A0A4X1VWY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000016742   ⟸   ENSSSCT00000017203
Protein Domains
Apple   Peptidase S1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000015799 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005037241 UniProtKB/TrEMBL
  ENSSSCG00025065223 UniProtKB/TrEMBL
  ENSSSCG00045021579 UniProtKB/TrEMBL
  ENSSSCG00065015614 UniProtKB/TrEMBL
  ENSSSCG00070027139 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000017203 ENTREZGENE
  ENSSSCT00000017203.5 UniProtKB/TrEMBL
  ENSSSCT00005059997.1 UniProtKB/TrEMBL
  ENSSSCT00025089522.1 UniProtKB/TrEMBL
  ENSSSCT00045036971.1 UniProtKB/TrEMBL
  ENSSSCT00065020712.1 UniProtKB/TrEMBL
  ENSSSCT00070054414.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.10.10 UniProtKB/TrEMBL
  Hepatocyte Growth Factor UniProtKB/TrEMBL
InterPro Apple UniProtKB/TrEMBL
  Pan_app UniProtKB/TrEMBL
  Peptidase_S1_PA UniProtKB/TrEMBL
  Peptidase_S1_PA_chymotrypsin UniProtKB/TrEMBL
  Peptidase_S1A UniProtKB/TrEMBL
  Trypsin_dom UniProtKB/TrEMBL
  TRYPSIN_HIS UniProtKB/TrEMBL
  TRYPSIN_SER UniProtKB/TrEMBL
KEGG Report ssc:397144 UniProtKB/TrEMBL
NCBI Gene KLKB1 ENTREZGENE
PANTHER ACROSIN-RELATED UniProtKB/TrEMBL
  HYALIN UniProtKB/TrEMBL
Pfam PAN_1 UniProtKB/TrEMBL
  Trypsin UniProtKB/TrEMBL
PRINTS APPLEDOMAIN UniProtKB/TrEMBL
  CHYMOTRYPSIN UniProtKB/TrEMBL
PROSITE APPLE UniProtKB/TrEMBL
  PAN UniProtKB/TrEMBL
  TRYPSIN_DOM UniProtKB/TrEMBL
  TRYPSIN_HIS UniProtKB/TrEMBL
  TRYPSIN_SER UniProtKB/TrEMBL
SMART APPLE UniProtKB/TrEMBL
  Tryp_SPc UniProtKB/TrEMBL
Superfamily-SCOP SSF50494 UniProtKB/TrEMBL
UniProt A0A4X1VWY2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1M4K5_PIG UniProtKB/TrEMBL
  O97506 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F1RZN7 UniProtKB/TrEMBL
VGNC ID VGNC:96397 ENTREZGENE