PAX6 (paired box 6) - Rat Genome Database

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Gene: PAX6 (paired box 6) Sus scrofa
Analyze
Symbol: PAX6
Name: paired box 6
RGD ID: 13907463
Description: ENCODES a protein that exhibits double-stranded DNA binding (ortholog); minor groove of adenine-thymine-rich DNA binding (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); astrocyte differentiation (ortholog); axon guidance (ortholog); ASSOCIATED WITH aniridia (ortholog); aniridia 1 (ortholog); Anophthalmia (ortholog); FOUND IN chromatin (inferred); cytoplasm (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: paired box protein Pax-6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl228,978,287 - 29,001,200 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1228,971,565 - 29,001,149 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2231,478,545 - 31,510,656 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
anterior/posterior pattern specification  (IEA,ISO)
astrocyte differentiation  (IEA,ISO)
axon guidance  (IEA,ISO)
axonogenesis  (IEA,ISO)
blood vessel development  (IEA)
brain development  (IEA,ISO)
camera-type eye development  (IEA,ISO)
cell differentiation  (IEA,ISO)
cell fate commitment  (IEA,ISO)
cell fate determination  (IEA,ISO)
cell population proliferation  (IEA,ISO)
cellular response to fibroblast growth factor stimulus  (ISO)
cellular response to glucose stimulus  (ISO)
cellular response to insulin stimulus  (ISO)
cellular response to leukemia inhibitory factor  (IEA,ISO)
cellular response to prostaglandin E stimulus  (ISO)
cellular response to xenobiotic stimulus  (ISO)
cerebellum development  (ISO)
cerebral cortex development  (IEA)
cerebral cortex regionalization  (IEA,ISO)
chromatin remodeling  (IEA)
commitment of neuronal cell to specific neuron type in forebrain  (IEA,ISO)
cornea development in camera-type eye  (IEA)
dorsal/ventral axis specification  (IEA,ISO)
dorsal/ventral pattern formation  (IEA,ISO)
embryonic camera-type eye morphogenesis  (IEA,ISO)
epithelial cell development  (ISO)
establishment of mitotic spindle orientation  (IEA,ISO)
eye photoreceptor cell development  (IEA,ISO)
forebrain development  (IEA,ISO)
forebrain dorsal/ventral pattern formation  (IEA,ISO)
forebrain-midbrain boundary formation  (IEA,ISO)
gene expression  (IEA,ISO)
glandular epithelial cell differentiation  (IEA,ISO)
glucose homeostasis  (IEA)
habenula development  (IEA,ISO)
hindbrain development  (ISO)
insulin metabolic process  (ISO)
interkinetic nuclear migration  (ISO)
iris morphogenesis  (IEA)
keratinocyte differentiation  (IEA,ISO)
lacrimal gland development  (IEA,ISO)
learned vocalization behavior or vocal learning  (ISO)
lens development in camera-type eye  (IEA,ISO)
negative regulation of epithelial cell proliferation  (IEA,ISO)
negative regulation of neural precursor cell proliferation  (IEA,ISO)
negative regulation of neuroblast proliferation  (IEA,ISO)
negative regulation of neuron differentiation  (IEA,ISO)
negative regulation of protein phosphorylation  (IEA,ISO)
negative regulation of transcription by RNA polymerase II  (IEA)
nervous system development  (IEA)
neural crest cell migration  (ISO)
neural precursor cell proliferation  (IEA,ISO)
neuroblast proliferation  (IEA,ISO)
neuron differentiation  (IEA,ISO)
neuron migration  (IEA,ISO)
obsolete DNA demethylation  (IEA)
olfactory bulb development  (ISO)
olfactory bulb mitral cell layer development  (ISO)
oligodendrocyte cell fate specification  (IEA,ISO)
pallium development  (IEA,ISO)
pancreatic A cell development  (IEA)
pancreatic A cell differentiation  (ISO)
pituitary gland development  (IEA,ISO)
positive regulation of cell fate specification  (ISO)
positive regulation of DNA-templated transcription  (IEA)
positive regulation of epithelial cell differentiation  (IEA,ISO)
positive regulation of gene expression  (IEA,ISO)
positive regulation of glutamatergic neuron differentiation  (ISO)
positive regulation of miRNA transcription  (IEA)
positive regulation of neuroblast proliferation  (IEA,ISO)
positive regulation of neuron migration  (ISO)
positive regulation of response to biotic stimulus  (ISO)
positive regulation of transcription by RNA polymerase II  (IEA,ISO)
protein localization to organelle  (IEA,ISO)
regionalization  (IEA,ISO)
regulation of asymmetric cell division  (IEA,ISO)
regulation of cell migration  (IEA,ISO)
regulation of DNA-templated transcription  (IEA)
regulation of gene expression  (IEA,ISO)
regulation of neurogenesis  (IEA,ISO)
regulation of neuron differentiation  (IEA,ISO)
regulation of neuron projection development  (ISO)
regulation of timing of cell differentiation  (IEA,ISO)
regulation of transcription by RNA polymerase II  (IEA,ISO)
response to ethanol  (ISO)
response to wounding  (IEA)
retina development in camera-type eye  (IEA,ISO)
rhombomere morphogenesis  (ISO)
salivary gland morphogenesis  (IEA,ISO)
sensory neuron migration  (ISO)
signal transduction involved in regulation of gene expression  (IEA,ISO)
smoothened signaling pathway  (IEA,ISO)
spinal cord development  (ISO)
telencephalon regionalization  (IEA,ISO)
transcription by RNA polymerase II  (IEA,ISO)
type B pancreatic cell differentiation  (IEA,ISO)
ventral spinal cord development  (IEA)

Cellular Component
chromatin  (IEA)
cytoplasm  (IEA)
cytosol  (IEA)
membrane  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:17407547   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PAX6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl228,978,287 - 29,001,200 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1228,971,565 - 29,001,149 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2231,478,545 - 31,510,656 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PAX6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381131,789,026 - 31,817,961 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1131,784,779 - 31,817,961 (-)EnsemblGRCh38hg38GRCh38
GRCh371131,810,574 - 31,839,509 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361131,767,034 - 31,789,455 (-)NCBINCBI36Build 36hg18NCBI36
Build 341131,768,057 - 31,789,341NCBI
Celera1131,953,799 - 31,986,960 (-)NCBICelera
Cytogenetic Map11p13NCBI
HuRef1131,501,758 - 31,535,259 (-)NCBIHuRef
CHM1_11131,805,847 - 31,839,030 (-)NCBICHM1_1
T2T-CHM13v2.01131,924,847 - 31,953,767 (-)NCBIT2T-CHM13v2.0
Pax6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392105,499,241 - 105,528,755 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2105,499,245 - 105,527,709 (+)EnsemblGRCm39 Ensembl
GRCm382105,668,896 - 105,698,410 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2105,668,900 - 105,697,364 (+)EnsemblGRCm38mm10GRCm38
MGSCv372105,516,602 - 105,537,226 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362105,477,284 - 105,497,908 (+)NCBIMGSCv36mm8
Celera2106,897,827 - 106,918,452 (+)NCBICelera
Cytogenetic Map2E3NCBI
cM Map255.31NCBI
Pax6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83112,590,034 - 112,611,771 (+)NCBIGRCr8
mRatBN7.2392,128,772 - 92,157,022 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl392,135,637 - 92,157,014 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx395,631,693 - 95,652,650 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03104,230,622 - 104,251,579 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03102,058,594 - 102,079,600 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0395,700,241 - 95,728,682 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl395,707,386 - 95,728,624 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03102,320,059 - 102,348,223 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4391,127,605 - 91,149,178 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1391,023,827 - 91,045,776 (+)NCBI
Celera391,190,477 - 91,211,449 (+)NCBICelera
RH 3.4 Map3722.9RGD
Cytogenetic Map3q33NCBI
Pax6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547610,058,961 - 10,074,162 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547610,058,979 - 10,074,668 (-)NCBIChiLan1.0ChiLan1.0
PAX6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2933,999,843 - 34,029,009 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11134,004,314 - 34,033,443 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01131,753,190 - 31,782,225 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11131,641,813 - 31,671,071 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1131,641,813 - 31,664,474 (-)Ensemblpanpan1.1panPan2
PAX6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1835,260,520 - 35,281,796 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01836,247,894 - 36,277,423 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1836,247,935 - 36,276,689 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11835,828,719 - 35,849,973 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01835,410,013 - 35,431,263 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01836,045,041 - 36,066,313 (+)NCBIUU_Cfam_GSD_1.0
Pax6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494732,827,732 - 32,856,209 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365335,957,971 - 5,982,075 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365335,952,529 - 5,980,889 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PAX6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1133,386,165 - 33,414,605 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl133,392,970 - 33,414,587 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038130,542,963 - 130,572,341 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pax6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476620,536,233 - 20,554,759 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476620,536,581 - 20,554,589 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PAX6
621 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system nervous system reproductive system respiratory system
High
Medium 3
Low 1 1 3 2 20 1 1
Below cutoff 4 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001244172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001244173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001244178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005661038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005661039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005661041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005661042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013994446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013994447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013994448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013994449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013994451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021078632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021078639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021078679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021078696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK348044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU463938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EW086931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EW184385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EW535144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EW537323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FS640118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FS646227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSSCT00000014546   ⟹   ENSSSCP00000014151
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl228,978,287 - 29,001,198 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000054342   ⟹   ENSSSCP00000040787
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl228,978,421 - 29,001,200 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000055747   ⟹   ENSSSCP00000033621
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl228,985,261 - 29,000,225 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000087357   ⟹   ENSSSCP00000074359
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl228,971,567 - 28,996,260 (+)Ensembl
RefSeq Acc Id: NM_001244172   ⟹   NP_001231101
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1228,971,580 - 29,001,136 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001244173   ⟹   NP_001231102
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1228,978,114 - 29,001,136 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001244178   ⟹   NP_001231107
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1228,978,167 - 29,001,136 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005661038   ⟹   XP_005661095
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1228,977,353 - 29,001,149 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005661039   ⟹   XP_005661096
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1228,971,565 - 29,001,149 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005661041   ⟹   XP_005661098
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1228,977,668 - 29,001,149 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005661042   ⟹   XP_005661099
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1228,979,154 - 29,001,149 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013994446   ⟹   XP_013849900
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1228,977,353 - 29,001,149 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013994447   ⟹   XP_013849901
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1228,975,481 - 29,001,149 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013994448   ⟹   XP_013849902
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1228,973,572 - 29,001,149 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013994449   ⟹   XP_013849903
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1228,975,481 - 29,001,149 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013994451   ⟹   XP_013849905
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1228,977,641 - 29,001,149 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021078632   ⟹   XP_020934291
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1228,984,431 - 29,001,149 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021078639   ⟹   XP_020934298
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1228,984,617 - 29,001,149 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021078679   ⟹   XP_020934338
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1228,984,647 - 29,001,149 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021078696   ⟹   XP_020934355
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1228,984,647 - 29,001,149 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001231101 (Get FASTA)   NCBI Sequence Viewer  
  NP_001231102 (Get FASTA)   NCBI Sequence Viewer  
  NP_001231107 (Get FASTA)   NCBI Sequence Viewer  
  XP_005661095 (Get FASTA)   NCBI Sequence Viewer  
  XP_005661096 (Get FASTA)   NCBI Sequence Viewer  
  XP_005661098 (Get FASTA)   NCBI Sequence Viewer  
  XP_005661099 (Get FASTA)   NCBI Sequence Viewer  
  XP_013849900 (Get FASTA)   NCBI Sequence Viewer  
  XP_013849901 (Get FASTA)   NCBI Sequence Viewer  
  XP_013849902 (Get FASTA)   NCBI Sequence Viewer  
  XP_013849903 (Get FASTA)   NCBI Sequence Viewer  
  XP_013849905 (Get FASTA)   NCBI Sequence Viewer  
  XP_020934291 (Get FASTA)   NCBI Sequence Viewer  
  XP_020934298 (Get FASTA)   NCBI Sequence Viewer  
  XP_020934338 (Get FASTA)   NCBI Sequence Viewer  
  XP_020934355 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000014151
  ENSSSCP00000014151.3
  ENSSSCP00000033621
  ENSSSCP00000033621.2
  ENSSSCP00000040787
  ENSSSCP00000040787.1
  ENSSSCP00005027311.1
  ENSSSCP00005027401.1
  ENSSSCP00005027452.1
  ENSSSCP00005027461.1
  ENSSSCP00005027472.1
  ENSSSCP00015001725.1
  ENSSSCP00015001734.1
  ENSSSCP00015001737.1
  ENSSSCP00015001759.1
  ENSSSCP00025007546.1
  ENSSSCP00025007590.1
  ENSSSCP00025007632.1
  ENSSSCP00030002221.1
  ENSSSCP00030002236.1
  ENSSSCP00030002253.1
  ENSSSCP00035039713.1
  ENSSSCP00035039740.1
  ENSSSCP00035039771.1
  ENSSSCP00040030076.1
  ENSSSCP00040030156.1
  ENSSSCP00040030377.1
  ENSSSCP00045044288.1
  ENSSSCP00045044332.1
  ENSSSCP00045044416.1
  ENSSSCP00050007606.1
  ENSSSCP00050007620.1
  ENSSSCP00050007643.1
  ENSSSCP00055010674.1
  ENSSSCP00055010704.1
  ENSSSCP00055010746.1
  ENSSSCP00060029648.1
  ENSSSCP00060029654.1
  ENSSSCP00060029664.1
  ENSSSCP00065022460.1
  ENSSSCP00065022463.1
  ENSSSCP00065022471.1
  ENSSSCP00070006735.1
  ENSSSCP00070006792.1
  ENSSSCP00070006793.1
  ENSSSCP00070006812.1
  ENSSSCP00070006815.1
  ENSSSCP00070006820.1
  ENSSSCP00070006825.1
RefSeq Acc Id: XP_005661096   ⟸   XM_005661039
- Peptide Label: isoform X3
- UniProtKB: F2Z5M7 (UniProtKB/TrEMBL),   A0A4X1SV95 (UniProtKB/TrEMBL),   A0A8D1VSX8 (UniProtKB/TrEMBL),   A0A8D0V8R2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001231101   ⟸   NM_001244172
- Peptide Label: isoform 1
- UniProtKB: A0A287AAF3 (UniProtKB/TrEMBL),   A0A4X1SWS9 (UniProtKB/TrEMBL),   A0A8D1VSX8 (UniProtKB/TrEMBL),   A0A8D1F5F2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013849902   ⟸   XM_013994448
- Peptide Label: isoform X3
- UniProtKB: F2Z5M7 (UniProtKB/TrEMBL),   A0A4X1SV95 (UniProtKB/TrEMBL),   A0A8D1VSX8 (UniProtKB/TrEMBL),   A0A8D0V8R2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013849901   ⟸   XM_013994447
- Peptide Label: isoform X3
- UniProtKB: F2Z5M7 (UniProtKB/TrEMBL),   A0A4X1SV95 (UniProtKB/TrEMBL),   A0A8D1VSX8 (UniProtKB/TrEMBL),   A0A8D0V8R2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013849903   ⟸   XM_013994449
- Peptide Label: isoform X3
- UniProtKB: F2Z5M7 (UniProtKB/TrEMBL),   A0A4X1SV95 (UniProtKB/TrEMBL),   A0A8D1VSX8 (UniProtKB/TrEMBL),   A0A8D0V8R2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005661095   ⟸   XM_005661038
- Peptide Label: isoform X3
- UniProtKB: F2Z5M7 (UniProtKB/TrEMBL),   A0A4X1SV95 (UniProtKB/TrEMBL),   A0A8D1VSX8 (UniProtKB/TrEMBL),   A0A8D0V8R2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013849900   ⟸   XM_013994446
- Peptide Label: isoform X3
- UniProtKB: F2Z5M7 (UniProtKB/TrEMBL),   A0A4X1SV95 (UniProtKB/TrEMBL),   A0A8D1VSX8 (UniProtKB/TrEMBL),   A0A8D0V8R2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013849905   ⟸   XM_013994451
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_005661098   ⟸   XM_005661041
- Peptide Label: isoform X5
- UniProtKB: A0A287AAF3 (UniProtKB/TrEMBL),   A0A4X1SWS9 (UniProtKB/TrEMBL),   A0A8D1VSX8 (UniProtKB/TrEMBL),   A0A8D1F5F2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001231102   ⟸   NM_001244173
- Peptide Label: isoform 1
- UniProtKB: A0A287AAF3 (UniProtKB/TrEMBL),   A0A4X1SWS9 (UniProtKB/TrEMBL),   A0A8D1VSX8 (UniProtKB/TrEMBL),   A0A8D1F5F2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001231107   ⟸   NM_001244178
- Peptide Label: isoform 2
- Sequence:
RefSeq Acc Id: XP_005661099   ⟸   XM_005661042
- Peptide Label: isoform X5
- UniProtKB: A0A287AAF3 (UniProtKB/TrEMBL),   A0A4X1SWS9 (UniProtKB/TrEMBL),   A0A8D1VSX8 (UniProtKB/TrEMBL),   A0A8D1F5F2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020934291   ⟸   XM_021078632
- Peptide Label: isoform X1
- UniProtKB: A0A4X1SWT7 (UniProtKB/TrEMBL),   A0A8D1VSX8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020934298   ⟸   XM_021078639
- Peptide Label: isoform X2
- UniProtKB: A0A8D1VSX8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020934338   ⟸   XM_021078679
- Peptide Label: isoform X4
- UniProtKB: A0A8D1VSX8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020934355   ⟸   XM_021078696
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: ENSSSCP00000040787   ⟸   ENSSSCT00000054342
RefSeq Acc Id: ENSSSCP00000033621   ⟸   ENSSSCT00000055747
RefSeq Acc Id: ENSSSCP00000074359   ⟸   ENSSSCT00000087357
RefSeq Acc Id: ENSSSCP00000014151   ⟸   ENSSSCT00000014546
Protein Domains
Homeobox   Paired


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000013320 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005028162 UniProtKB/TrEMBL
  ENSSSCG00015003498 UniProtKB/TrEMBL
  ENSSSCG00025013797 UniProtKB/TrEMBL
  ENSSSCG00030004099 UniProtKB/TrEMBL
  ENSSSCG00035069847 UniProtKB/TrEMBL
  ENSSSCG00040051743 UniProtKB/TrEMBL
  ENSSSCG00045036476 UniProtKB/TrEMBL
  ENSSSCG00050013608 UniProtKB/TrEMBL
  ENSSSCG00055006960 UniProtKB/TrEMBL
  ENSSSCG00060050663 UniProtKB/TrEMBL
  ENSSSCG00065037804 UniProtKB/TrEMBL
  ENSSSCG00070004263 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000014546 ENTREZGENE
  ENSSSCT00000014546.4 UniProtKB/TrEMBL
  ENSSSCT00000054342 ENTREZGENE
  ENSSSCT00000054342.3 UniProtKB/TrEMBL
  ENSSSCT00000055747 ENTREZGENE
  ENSSSCT00000055747.3 UniProtKB/TrEMBL
  ENSSSCT00005044642.1 UniProtKB/TrEMBL
  ENSSSCT00005044771.1 UniProtKB/TrEMBL
  ENSSSCT00005044843.1 UniProtKB/TrEMBL
  ENSSSCT00005044857.1 UniProtKB/TrEMBL
  ENSSSCT00005044870.1 UniProtKB/TrEMBL
  ENSSSCT00015004638.1 UniProtKB/TrEMBL
  ENSSSCT00015004652.1 UniProtKB/TrEMBL
  ENSSSCT00015004657.1 UniProtKB/TrEMBL
  ENSSSCT00015004706.1 UniProtKB/TrEMBL
  ENSSSCT00025018685.1 UniProtKB/TrEMBL
  ENSSSCT00025018785.1 UniProtKB/TrEMBL
  ENSSSCT00025018887.1 UniProtKB/TrEMBL
  ENSSSCT00030005446.1 UniProtKB/TrEMBL
  ENSSSCT00030005469.1 UniProtKB/TrEMBL
  ENSSSCT00030005495.1 UniProtKB/TrEMBL
  ENSSSCT00035094563.1 UniProtKB/TrEMBL
  ENSSSCT00035094608.1 UniProtKB/TrEMBL
  ENSSSCT00035094673.1 UniProtKB/TrEMBL
  ENSSSCT00040070604.1 UniProtKB/TrEMBL
  ENSSSCT00040070784.1 UniProtKB/TrEMBL
  ENSSSCT00040071216.1 UniProtKB/TrEMBL
  ENSSSCT00045062846.1 UniProtKB/TrEMBL
  ENSSSCT00045062906.1 UniProtKB/TrEMBL
  ENSSSCT00045063025.1 UniProtKB/TrEMBL
  ENSSSCT00050018448.1 UniProtKB/TrEMBL
  ENSSSCT00050018477.1 UniProtKB/TrEMBL
  ENSSSCT00050018520.1 UniProtKB/TrEMBL
  ENSSSCT00055013561.1 UniProtKB/TrEMBL
  ENSSSCT00055013593.1 UniProtKB/TrEMBL
  ENSSSCT00055013645.1 UniProtKB/TrEMBL
  ENSSSCT00060068944.1 UniProtKB/TrEMBL
  ENSSSCT00060068953.1 UniProtKB/TrEMBL
  ENSSSCT00060068969.1 UniProtKB/TrEMBL
  ENSSSCT00065051683.1 UniProtKB/TrEMBL
  ENSSSCT00065051690.1 UniProtKB/TrEMBL
  ENSSSCT00065051703.1 UniProtKB/TrEMBL
  ENSSSCT00070008191.1 UniProtKB/TrEMBL
  ENSSSCT00070008262.1 UniProtKB/TrEMBL
  ENSSSCT00070008264.1 UniProtKB/TrEMBL
  ENSSSCT00070008283.1 UniProtKB/TrEMBL
  ENSSSCT00070008287.1 UniProtKB/TrEMBL
  ENSSSCT00070008293.1 UniProtKB/TrEMBL
  ENSSSCT00070008300.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  PAIRED_DNA_bd_dom UniProtKB/TrEMBL
  Paired_dom UniProtKB/TrEMBL
  PAX_fam UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
KEGG Report ssc:100514152 UniProtKB/TrEMBL
NCBI Gene PAX6 ENTREZGENE
PANTHER PAIRED BOX PROTEIN PAX-6 UniProtKB/TrEMBL
  PAIRED BOX PROTEIN PAX-6 UniProtKB/TrEMBL
  PTHR45636 UniProtKB/TrEMBL
Pfam Homeodomain UniProtKB/TrEMBL
  PAX UniProtKB/TrEMBL
PRINTS PAIREDBOX UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
  PAIRED_1 UniProtKB/TrEMBL
  PAIRED_2 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
  PAX UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0A287AAF3 ENTREZGENE
  A0A4X1SV95 ENTREZGENE
  A0A4X1SWS9 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SWT7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SWX7_PIG UniProtKB/TrEMBL
  A0A8D0MDN8_PIG UniProtKB/TrEMBL
  A0A8D0V8R2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0V8S9_PIG UniProtKB/TrEMBL
  A0A8D1F5F2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1KEW6_PIG UniProtKB/TrEMBL
  A0A8D1VSX8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D2C6L2_PIG UniProtKB/TrEMBL
  F2Z5M7 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A286ZPU0 UniProtKB/TrEMBL
  A0A287AAF3 UniProtKB/TrEMBL
  A0A4X1SV95 UniProtKB/TrEMBL
VGNC ID VGNC:91195 ENTREZGENE