SIRT5 (sirtuin 5) - Rat Genome Database

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Gene: SIRT5 (sirtuin 5) Sus scrofa
Analyze
Symbol: SIRT5
Name: sirtuin 5
RGD ID: 13892792
Description: ENCODES a protein that exhibits metal ion binding (inferred); NAD+ binding (inferred); NAD-dependent histone deacetylase activity (inferred); INVOLVED IN negative regulation of cardiac muscle cell apoptotic process (ortholog); regulation of ketone biosynthetic process (ortholog); response to ischemia (ortholog); PARTICIPATES IN histone modification pathway; Sirtuin mediated pathway; FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: NAD-dependent protein deacylase sirtuin-5, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl79,951,030 - 9,968,448 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.179,951,024 - 9,968,004 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2710,327,724 - 10,330,511 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:19389481   PMID:22301074  


Genomics

Comparative Map Data
SIRT5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl79,951,030 - 9,968,448 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.179,951,024 - 9,968,004 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2710,327,724 - 10,330,511 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SIRT5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38613,574,274 - 13,615,158 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl613,574,227 - 13,615,158 (+)EnsemblGRCh38hg38GRCh38
GRCh37613,574,506 - 13,615,390 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36613,682,812 - 13,720,500 (+)NCBINCBI36Build 36hg18NCBI36
Build 34613,682,811 - 13,713,947NCBI
Celera614,814,287 - 14,854,285 (+)NCBICelera
Cytogenetic Map6p23NCBI
HuRef613,519,134 - 13,559,766 (+)NCBIHuRef
CHM1_1613,577,139 - 13,617,757 (+)NCBICHM1_1
T2T-CHM13v2.0613,447,831 - 13,488,715 (+)NCBIT2T-CHM13v2.0
Sirt5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391343,518,849 - 43,549,073 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1343,518,972 - 43,548,679 (+)EnsemblGRCm39 Ensembl
GRCm381343,365,389 - 43,395,203 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1343,365,496 - 43,395,203 (+)EnsemblGRCm38mm10GRCm38
MGSCv371343,460,904 - 43,490,572 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361343,376,507 - 43,406,175 (+)NCBIMGSCv36mm8
Celera1344,444,248 - 44,473,768 (+)NCBICelera
Cytogenetic Map13A4NCBI
cM Map1321.6NCBI
Sirt5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81721,515,982 - 21,543,529 (-)NCBIGRCr8
mRatBN7.21721,310,028 - 21,337,137 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1721,310,028 - 21,337,101 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1721,198,845 - 21,226,111 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01722,802,514 - 22,829,782 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01721,125,948 - 21,153,215 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01723,986,710 - 24,013,854 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1723,986,758 - 24,013,881 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01725,936,391 - 25,963,434 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41727,135,610 - 27,162,715 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11727,138,453 - 27,165,556 (-)NCBI
Celera1721,007,452 - 21,034,513 (-)NCBICelera
Cytogenetic Map17p14NCBI
Sirt5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554651,129,217 - 1,167,604 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554651,129,217 - 1,167,604 (-)NCBIChiLan1.0ChiLan1.0
SIRT5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2528,228,262 - 28,266,098 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1624,218,286 - 24,256,255 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0613,419,242 - 13,457,200 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1613,790,576 - 13,828,464 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl613,791,112 - 13,828,464 (+)Ensemblpanpan1.1panPan2
SIRT5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13513,017,397 - 13,055,655 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3513,017,397 - 13,063,022 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3512,966,806 - 13,004,993 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03513,115,780 - 13,154,165 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3513,115,780 - 13,179,805 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13512,941,308 - 12,979,591 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03512,994,546 - 13,031,107 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03514,317,852 - 14,356,107 (+)NCBIUU_Cfam_GSD_1.0
Sirt5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494611,516,904 - 11,539,107 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936552192,226 - 214,030 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936552192,182 - 214,037 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SIRT5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11758,535,645 - 58,573,769 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1758,532,650 - 58,563,818 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604413,624,450 - 13,664,862 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sirt5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475612,678,877 - 12,706,604 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475612,678,866 - 12,705,862 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SIRT5
789 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 2 2 1 2 13 2
Low 8 2 1 4 10 3 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000039420   ⟹   ENSSSCP00000042575
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl79,951,030 - 9,968,448 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000070505   ⟹   ENSSSCP00000073575
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl79,951,030 - 9,968,448 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000104892   ⟹   ENSSSCP00000075685
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl79,951,030 - 9,968,446 (+)Ensembl
RefSeq Acc Id: NM_001105308   ⟹   NP_001098778
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.179,951,024 - 9,968,004 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001098778   ⟸   NM_001105308
- UniProtKB: A7XXV9 (UniProtKB/TrEMBL),   A0A4X1VJI2 (UniProtKB/TrEMBL),   B0FWP7 (UniProtKB/TrEMBL),   A0A8D1I6P1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000042575   ⟸   ENSSSCT00000039420
RefSeq Acc Id: ENSSSCP00000073575   ⟸   ENSSSCT00000070505
RefSeq Acc Id: ENSSSCP00000075685   ⟸   ENSSSCT00000104892
Protein Domains
Deacetylase sirtuin-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000031129 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005003449 UniProtKB/TrEMBL
  ENSSSCG00005031195 UniProtKB/TrEMBL
  ENSSSCG00015042376 UniProtKB/TrEMBL
  ENSSSCG00025051121 UniProtKB/TrEMBL
  ENSSSCG00030016010 UniProtKB/TrEMBL
  ENSSSCG00035048674 UniProtKB/TrEMBL
  ENSSSCG00040017259 UniProtKB/TrEMBL
  ENSSSCG00045025131 UniProtKB/TrEMBL
  ENSSSCG00050012911 UniProtKB/TrEMBL
  ENSSSCG00055016307 UniProtKB/TrEMBL
  ENSSSCG00060005508 UniProtKB/TrEMBL
  ENSSSCG00065030217 UniProtKB/TrEMBL
  ENSSSCG00070025817 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000039420 ENTREZGENE
  ENSSSCT00000039420.2 UniProtKB/TrEMBL
  ENSSSCT00000070505.1 UniProtKB/TrEMBL
  ENSSSCT00000104892.1 UniProtKB/TrEMBL
  ENSSSCT00005005086.1 UniProtKB/TrEMBL
  ENSSSCT00005049750.1 UniProtKB/TrEMBL
  ENSSSCT00005049778.1 UniProtKB/TrEMBL
  ENSSSCT00005049788.1 UniProtKB/TrEMBL
  ENSSSCT00005049796.1 UniProtKB/TrEMBL
  ENSSSCT00005049897.1 UniProtKB/TrEMBL
  ENSSSCT00015056466.1 UniProtKB/TrEMBL
  ENSSSCT00015056728.1 UniProtKB/TrEMBL
  ENSSSCT00015057004.1 UniProtKB/TrEMBL
  ENSSSCT00025069861.1 UniProtKB/TrEMBL
  ENSSSCT00025070004.1 UniProtKB/TrEMBL
  ENSSSCT00030022196.1 UniProtKB/TrEMBL
  ENSSSCT00030022210.1 UniProtKB/TrEMBL
  ENSSSCT00035064848.1 UniProtKB/TrEMBL
  ENSSSCT00035064857.1 UniProtKB/TrEMBL
  ENSSSCT00040023253.1 UniProtKB/TrEMBL
  ENSSSCT00040023272.1 UniProtKB/TrEMBL
  ENSSSCT00045042829.1 UniProtKB/TrEMBL
  ENSSSCT00045042946.1 UniProtKB/TrEMBL
  ENSSSCT00050017420.1 UniProtKB/TrEMBL
  ENSSSCT00050017426.1 UniProtKB/TrEMBL
  ENSSSCT00050017434.1 UniProtKB/TrEMBL
  ENSSSCT00050017437.1 UniProtKB/TrEMBL
  ENSSSCT00050017446.1 UniProtKB/TrEMBL
  ENSSSCT00055032161.1 UniProtKB/TrEMBL
  ENSSSCT00055032264.1 UniProtKB/TrEMBL
  ENSSSCT00060006945.1 UniProtKB/TrEMBL
  ENSSSCT00060006947.1 UniProtKB/TrEMBL
  ENSSSCT00065040782.1 UniProtKB/TrEMBL
  ENSSSCT00065040794.1 UniProtKB/TrEMBL
  ENSSSCT00070051601.1 UniProtKB/TrEMBL
  ENSSSCT00070051608.1 UniProtKB/TrEMBL
  ENSSSCT00070051624.1 UniProtKB/TrEMBL
  ENSSSCT00070051629.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1600.10 UniProtKB/TrEMBL
  TPP-binding domain UniProtKB/TrEMBL
InterPro DHS-like_NAD/FAD-binding_dom UniProtKB/TrEMBL
  Sirtuin UniProtKB/TrEMBL
  Sirtuin_cat_small_dom_sf UniProtKB/TrEMBL
  Sirtuin_class_III UniProtKB/TrEMBL
  Ssirtuin_cat_dom UniProtKB/TrEMBL
KEGG Report ssc:100125966 UniProtKB/TrEMBL
NCBI Gene SIRT5 ENTREZGENE
PANTHER NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL UniProtKB/TrEMBL
  NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED UniProtKB/TrEMBL
Pfam SIR2 UniProtKB/TrEMBL
PROSITE SIRTUIN UniProtKB/TrEMBL
Superfamily-SCOP SSF52467 UniProtKB/TrEMBL
UniProt A0A287AF07_PIG UniProtKB/TrEMBL
  A0A480MQ13_PIG UniProtKB/TrEMBL
  A0A4X1VJI2 ENTREZGENE
  A0A4X1VJJ7_PIG UniProtKB/TrEMBL
  A0A4X1VJK2_PIG UniProtKB/TrEMBL
  A0A5G2RB79_PIG UniProtKB/TrEMBL
  A0A8D0I0F6_PIG UniProtKB/TrEMBL
  A0A8D0NVT8_PIG UniProtKB/TrEMBL
  A0A8D1AB22_PIG UniProtKB/TrEMBL
  A0A8D1C148_PIG UniProtKB/TrEMBL
  A0A8D1CWG5_PIG UniProtKB/TrEMBL
  A0A8D1I6P1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1K297_PIG UniProtKB/TrEMBL
  A0A8D1K5F6_PIG UniProtKB/TrEMBL
  A0A8D1LE60_PIG UniProtKB/TrEMBL
  A0A8D1LEN0_PIG UniProtKB/TrEMBL
  A0A8D1LEN2_PIG UniProtKB/TrEMBL
  A0A8D1SFF9_PIG UniProtKB/TrEMBL
  A0A8D1SXL0_PIG UniProtKB/TrEMBL
  A0A8D1Y7B2_PIG UniProtKB/TrEMBL
  A0A8D1Y9L2_PIG UniProtKB/TrEMBL
  A0A8W4F8P2_PIG UniProtKB/TrEMBL
  A7XXV9 ENTREZGENE, UniProtKB/TrEMBL
  B0FWP7 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1VJI2 UniProtKB/TrEMBL
VGNC ID VGNC:92888 ENTREZGENE