SF1 (splicing factor 1) - Rat Genome Database

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Gene: SF1 (splicing factor 1) Homo sapiens
Analyze
Symbol: SF1
Name: splicing factor 1
RGD ID: 1346504
HGNC Page HGNC:12950
Description: Enables identical protein binding activity. Predicted to be involved in regulation of mRNA splicing, via spliceosome. Predicted to act upstream of or within several processes, including Leydig cell differentiation; male sex determination; and nuclear body organization. Located in U2AF complex and nucleoplasm. Part of spliceosomal complex.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: BBP; D11S636; mammalian branch point-binding protein; MBBP; transcription factor ZFM1; ZCCHC25; ZFM1; zinc finger gene in MEN1 locus; zinc finger protein 162; ZNF162
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
NCBI Annotation Information: Note: SF1 (Gene ID: 7536) and NR5A1 (Gene ID: 2516) share the SF1 symbol/alias in common. SF1 is a widely used alternative name for nuclear receptor subfamily 5 group A member 1 (NR5A1), which can be confused with the official symbol for SF1 (splicing factor 1). [01 Jun 2018]
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381164,764,606 - 64,778,542 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1164,764,606 - 64,778,786 (-)EnsemblGRCh38hg38GRCh38
GRCh371164,532,078 - 64,546,014 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361164,288,654 - 64,302,817 (-)NCBINCBI36Build 36hg18NCBI36
Build 341164,288,653 - 64,302,817NCBI
Celera1161,858,574 - 61,872,815 (-)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1160,858,921 - 60,873,339 (-)NCBIHuRef
CHM1_11164,415,846 - 64,430,091 (-)NCBICHM1_1
T2T-CHM13v2.01164,757,911 - 64,771,848 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (EXP)
(+)-schisandrin B  (ISO)
(-)-epigallocatechin 3-gallate  (EXP)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,2-dimethylhydrazine  (ISO)
14-Deoxy-11,12-didehydroandrographolide  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP)
17beta-hydroxy-5alpha-androstan-3-one  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
2-methylcholine  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-amino-2,6-dinitrotoluene  (ISO)
8-Br-cAMP  (EXP)
acrolein  (EXP)
alpha-pinene  (EXP)
ammonium chloride  (ISO)
benzatropine  (EXP)
benzo[a]pyrene  (EXP)
bis(2-chloroethyl) sulfide  (EXP)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
caffeine  (EXP)
carmustine  (EXP)
cerium trichloride  (ISO)
chromium(6+)  (ISO)
cisplatin  (EXP)
copper(II) sulfate  (EXP)
cortisol  (EXP)
coumestrol  (EXP)
cypermethrin  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (EXP)
dicrotophos  (EXP)
dieldrin  (ISO)
dihydroartemisinin  (EXP)
doxorubicin  (EXP)
elemental selenium  (EXP)
Enterolactone  (EXP)
enzyme inhibitor  (EXP)
epoxiconazole  (ISO)
ethanol  (ISO)
flutamide  (ISO)
FR900359  (EXP)
hydralazine  (EXP)
hydrogen peroxide  (EXP)
hydroxyflutamide  (EXP)
indometacin  (EXP)
inulin  (ISO)
ivermectin  (EXP)
methylparaben  (EXP)
mifepristone  (EXP)
Monobutylphthalate  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
ozone  (EXP)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
potassium chromate  (EXP)
selenium atom  (EXP)
silicon dioxide  (EXP)
Soman  (ISO)
temozolomide  (EXP)
tert-butyl hydroperoxide  (EXP)
tetrachloromethane  (ISO)
thioacetamide  (ISO)
triadimefon  (EXP)
trichloroethene  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
vitamin E  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nuclear body  (IEA)
nucleoplasm  (IDA,TAS)
nucleus  (IBA,IEA,NAS)
ribosome  (NAS)
spliceosomal complex  (IDA,IEA,IPI)
U2AF complex  (IPI)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. The spliceosome: design principles of a dynamic RNP machine. Wahl MC, etal., Cell. 2009 Feb 20;136(4):701-18. doi: 10.1016/j.cell.2009.02.009.
Additional References at PubMed
PMID:1406644   PMID:7912130   PMID:8752089   PMID:9150140   PMID:9192847   PMID:9506990   PMID:9512519   PMID:9573336   PMID:9660765   PMID:9731529   PMID:9765201   PMID:10449420  
PMID:11467860   PMID:11604498   PMID:11691992   PMID:12176931   PMID:12477932   PMID:12718882   PMID:12917325   PMID:15105431   PMID:15302935   PMID:15456888   PMID:15489334   PMID:15647371  
PMID:16002533   PMID:16055720   PMID:16189514   PMID:16964243   PMID:17024186   PMID:17081983   PMID:17332742   PMID:17383426   PMID:17589525   PMID:18029348   PMID:18285458   PMID:18305892  
PMID:18974054   PMID:19738201   PMID:20133449   PMID:21062807   PMID:21145461   PMID:21146534   PMID:21360626   PMID:21505248   PMID:21768215   PMID:21873635   PMID:22365833   PMID:22412018  
PMID:22623428   PMID:22658674   PMID:22681889   PMID:22863883   PMID:22906951   PMID:22939629   PMID:23151878   PMID:23273425   PMID:23275563   PMID:23349634   PMID:23403292   PMID:23414517  
PMID:23891004   PMID:24457600   PMID:24711643   PMID:24981860   PMID:25043850   PMID:25145264   PMID:25192599   PMID:25416956   PMID:25505242   PMID:25605964   PMID:25921289   PMID:25959826  
PMID:26186194   PMID:26344197   PMID:26420826   PMID:26496610   PMID:26641092   PMID:26816005   PMID:27545878   PMID:27684187   PMID:27926873   PMID:28002734   PMID:28225217   PMID:28302793  
PMID:28378594   PMID:28431233   PMID:28514442   PMID:28515276   PMID:28533407   PMID:28712289   PMID:29180619   PMID:29298432   PMID:29395067   PMID:29676528   PMID:29845934   PMID:29961565  
PMID:30009671   PMID:30110629   PMID:30209976   PMID:30463901   PMID:30585729   PMID:30737378   PMID:30804502   PMID:30833792   PMID:30890647   PMID:30940648   PMID:30948266   PMID:31010829  
PMID:31046837   PMID:31059266   PMID:31091453   PMID:31110137   PMID:31280863   PMID:31324722   PMID:31332168   PMID:31343991   PMID:31478661   PMID:31515488   PMID:31586073   PMID:31992135  
PMID:32041737   PMID:32203420   PMID:32296183   PMID:32416067   PMID:32538781   PMID:32665550   PMID:32687490   PMID:32780723   PMID:32807901   PMID:32850835   PMID:32877691   PMID:32963011  
PMID:32994395   PMID:33397691   PMID:33916271   PMID:33961781   PMID:34079125   PMID:34133714   PMID:34373451   PMID:34650049   PMID:34795231   PMID:35013218   PMID:35013556   PMID:35031058  
PMID:35032548   PMID:35198878   PMID:35256949   PMID:35271311   PMID:35439318   PMID:35446349   PMID:35509820   PMID:35545047   PMID:35563538   PMID:35652658   PMID:35831314   PMID:35850772  
PMID:35914814   PMID:35944360   PMID:35987950   PMID:36095012   PMID:36173164   PMID:36215168   PMID:36232890   PMID:36244648   PMID:36373674   PMID:36424410   PMID:36517590   PMID:36526897  
PMID:36527092   PMID:37268858   PMID:37689310   PMID:37827155   PMID:37892191   PMID:38228887   PMID:38360978  


Genomics

Comparative Map Data
SF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381164,764,606 - 64,778,542 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1164,764,606 - 64,778,786 (-)EnsemblGRCh38hg38GRCh38
GRCh371164,532,078 - 64,546,014 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361164,288,654 - 64,302,817 (-)NCBINCBI36Build 36hg18NCBI36
Build 341164,288,653 - 64,302,817NCBI
Celera1161,858,574 - 61,872,815 (-)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1160,858,921 - 60,873,339 (-)NCBIHuRef
CHM1_11164,415,846 - 64,430,091 (-)NCBICHM1_1
T2T-CHM13v2.01164,757,911 - 64,771,848 (-)NCBIT2T-CHM13v2.0
Sf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39196,413,952 - 6,428,060 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl196,413,720 - 6,428,060 (+)EnsemblGRCm39 Ensembl
GRCm38196,363,673 - 6,378,038 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl196,363,690 - 6,378,030 (+)EnsemblGRCm38mm10GRCm38
MGSCv37196,363,690 - 6,378,038 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36196,364,088 - 6,376,425 (+)NCBIMGSCv36mm8
Celera196,236,708 - 6,251,056 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.48NCBI
Sf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81213,090,256 - 213,112,688 (+)NCBIGRCr8
mRatBN7.21203,670,016 - 203,683,432 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1203,670,018 - 203,684,330 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1212,018,848 - 212,032,153 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01219,115,356 - 219,128,639 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01211,806,411 - 211,819,694 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01221,735,512 - 221,749,216 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1221,735,517 - 221,749,086 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01228,723,282 - 228,737,009 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41209,146,177 - 209,159,459 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11209,312,189 - 209,313,441 (+)NCBI
Celera1201,203,443 - 201,216,725 (+)NCBICelera
Cytogenetic Map1q43NCBI
Sf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542220,391,722 - 20,551,870 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542220,391,340 - 20,406,555 (+)NCBIChiLan1.0ChiLan1.0
SF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2965,990,503 - 66,006,673 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11167,033,499 - 67,048,030 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01160,120,126 - 60,134,279 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11163,461,318 - 63,473,350 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1163,461,318 - 63,473,355 (-)Ensemblpanpan1.1panPan2
SF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11852,380,058 - 52,393,833 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1852,380,211 - 52,393,048 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1850,987,426 - 51,001,160 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01853,421,292 - 53,435,068 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1853,421,043 - 53,435,063 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11852,516,258 - 52,529,989 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01852,102,165 - 52,115,924 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01852,886,303 - 52,900,036 (+)NCBIUU_Cfam_GSD_1.0
Sf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049478,091,417 - 8,104,506 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365994,533,795 - 4,546,853 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365994,533,664 - 4,546,857 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl27,391,383 - 7,404,948 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.127,391,295 - 7,404,693 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.226,522,689 - 6,537,534 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.119,456,524 - 9,470,920 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl19,456,971 - 9,472,396 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038106,845,714 - 106,860,060 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476721,606,065 - 21,621,830 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476721,606,059 - 21,621,831 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SF1
29 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh37/hg19 11q13.1(chr11:64485197-64691737)x3 copy number gain See cases [RCV000203413] Chr11:64485197..64691737 [GRCh37]
Chr11:11q13.1
uncertain significance
GRCh37/hg19 11p15.5-q25(chr11:230616-134938470) copy number gain See cases [RCV000511729] Chr11:230616..134938470 [GRCh37]
Chr11:11p15.5-q25
pathogenic
GRCh37/hg19 11q13.1-13.2(chr11:64501919-67129258)x3 copy number gain See cases [RCV000511632] Chr11:64501919..67129258 [GRCh37]
Chr11:11q13.1-13.2
likely pathogenic
GRCh37/hg19 11p15.5-q25(chr11:230616-134938470)x3 copy number gain See cases [RCV000510881] Chr11:230616..134938470 [GRCh37]
Chr11:11p15.5-q25
pathogenic
NM_004630.4(SF1):c.1336C>G (p.Pro446Ala) single nucleotide variant Inborn genetic diseases [RCV003300049] Chr11:64767577 [GRCh38]
Chr11:64535049 [GRCh37]
Chr11:11q13.1
uncertain significance
NM_004630.4(SF1):c.31+349A>G single nucleotide variant Inborn genetic diseases [RCV003300168] Chr11:64778013 [GRCh38]
Chr11:64545485 [GRCh37]
Chr11:11q13.1
uncertain significance
GRCh37/hg19 11p15.5-q25(chr11:198510-134934063)x3 copy number gain not provided [RCV000737348] Chr11:198510..134934063 [GRCh37]
Chr11:11p15.5-q25
pathogenic
GRCh37/hg19 11p15.5-q25(chr11:70864-134938470)x3 copy number gain not provided [RCV000749874] Chr11:70864..134938470 [GRCh37]
Chr11:11p15.5-q25
pathogenic
GRCh37/hg19 11q13.1(chr11:64544135-64622868)x3 copy number gain not provided [RCV000750078] Chr11:64544135..64622868 [GRCh37]
Chr11:11q13.1
benign
GRCh37/hg19 11q13.1(chr11:64396501-64883447)x3 copy number gain not provided [RCV000848683] Chr11:64396501..64883447 [GRCh37]
Chr11:11q13.1
uncertain significance
dup(11)(q13.1q13.1) duplication Ependymoma [RCV000785872] Chr11:63533279..65429676 [GRCh37]
Chr11:11q13.1
likely pathogenic
GRCh37/hg19 11q13.1(chr11:64474135-64611928)x3 copy number gain not provided [RCV000848374] Chr11:64474135..64611928 [GRCh37]
Chr11:11q13.1
uncertain significance
Single allele deletion Intellectual disability [RCV001293382] Chr11:118359328..118372573 [GRCh37]
Chr11:11p15.3-q23.3
pathogenic
NC_000011.9:g.(?_59596957)_(68707199_?)dup duplication Familial temporal lobe epilepsy 8 [RCV001372442] Chr11:59596957..68707199 [GRCh37]
Chr11:11q12.1-13.3
uncertain significance
NM_004630.4(SF1):c.221del (p.Pro74fs) deletion Neurodevelopmental disorder [RCV001780022] Chr11:64773445 [GRCh38]
Chr11:64540917 [GRCh37]
Chr11:11q13.1
likely pathogenic
NC_000011.9:g.(?_64522783)_(66283694_?)del deletion Bardet-Biedl syndrome [RCV002014493]|Glycogen storage disease, type V [RCV002004587] Chr11:64522783..66283694 [GRCh37]
Chr11:11q13.1-13.2
pathogenic
NC_000011.9:g.(?_58916346)_(64972349_?)dup duplication Leukocyte adhesion deficiency 3 [RCV003113394]|not provided [RCV003113393] Chr11:58916346..64972349 [GRCh37]
Chr11:11q12.1-13.1
uncertain significance|no classifications from unflagged records
GRCh37/hg19 11p13-q25(chr11:32799481-134938470)x3 copy number gain MISSED ABORTION [RCV002282973] Chr11:32799481..134938470 [GRCh37]
Chr11:11p13-q25
pathogenic
NM_004630.4(SF1):c.1364C>T (p.Pro455Leu) single nucleotide variant Inborn genetic diseases [RCV002841261] Chr11:64767230 [GRCh38]
Chr11:64534702 [GRCh37]
Chr11:11q13.1
uncertain significance
NM_004630.4(SF1):c.1045C>T (p.Pro349Ser) single nucleotide variant Inborn genetic diseases [RCV002839959] Chr11:64768129 [GRCh38]
Chr11:64535601 [GRCh37]
Chr11:11q13.1
uncertain significance
NM_004630.4(SF1):c.1115G>T (p.Gly372Val) single nucleotide variant Inborn genetic diseases [RCV002779057] Chr11:64767798 [GRCh38]
Chr11:64535270 [GRCh37]
Chr11:11q13.1
uncertain significance
NM_004630.4(SF1):c.31+141G>A single nucleotide variant Inborn genetic diseases [RCV002684358] Chr11:64778221 [GRCh38]
Chr11:64545693 [GRCh37]
Chr11:11q13.1
uncertain significance
NM_004630.4(SF1):c.*348T>C single nucleotide variant Inborn genetic diseases [RCV002728109] Chr11:64765470 [GRCh38]
Chr11:64532942 [GRCh37]
Chr11:11q13.1
uncertain significance
NM_004630.4(SF1):c.*339T>A single nucleotide variant Inborn genetic diseases [RCV002778330] Chr11:64765479 [GRCh38]
Chr11:64532951 [GRCh37]
Chr11:11q13.1
uncertain significance
NM_004630.4(SF1):c.31+325C>T single nucleotide variant Inborn genetic diseases [RCV002839995] Chr11:64778037 [GRCh38]
Chr11:64545509 [GRCh37]
Chr11:11q13.1
uncertain significance
NM_004630.4(SF1):c.31+259C>T single nucleotide variant Inborn genetic diseases [RCV002732871] Chr11:64778103 [GRCh38]
Chr11:64545575 [GRCh37]
Chr11:11q13.1
uncertain significance
NM_004630.4(SF1):c.31+256A>G single nucleotide variant Inborn genetic diseases [RCV002733852] Chr11:64778106 [GRCh38]
Chr11:64545578 [GRCh37]
Chr11:11q13.1
uncertain significance
NM_004630.4(SF1):c.*332A>G single nucleotide variant Inborn genetic diseases [RCV002845863] Chr11:64765486 [GRCh38]
Chr11:64532958 [GRCh37]
Chr11:11q13.1
uncertain significance
NM_004630.4(SF1):c.31+196C>T single nucleotide variant Inborn genetic diseases [RCV002823503] Chr11:64778166 [GRCh38]
Chr11:64545638 [GRCh37]
Chr11:11q13.1
uncertain significance
NM_004630.4(SF1):c.31+316C>G single nucleotide variant Inborn genetic diseases [RCV002823531] Chr11:64778046 [GRCh38]
Chr11:64545518 [GRCh37]
Chr11:11q13.1
uncertain significance
NM_004630.4(SF1):c.31+286C>T single nucleotide variant Inborn genetic diseases [RCV002662130] Chr11:64778076 [GRCh38]
Chr11:64545548 [GRCh37]
Chr11:11q13.1
uncertain significance
NM_004630.4(SF1):c.18C>G (p.Asn6Lys) single nucleotide variant Inborn genetic diseases [RCV002738325] Chr11:64778375 [GRCh38]
Chr11:64545847 [GRCh37]
Chr11:11q13.1
uncertain significance
NM_004630.4(SF1):c.31+277C>T single nucleotide variant Inborn genetic diseases [RCV002743126] Chr11:64778085 [GRCh38]
Chr11:64545557 [GRCh37]
Chr11:11q13.1
uncertain significance
NM_004630.4(SF1):c.31+265C>T single nucleotide variant Inborn genetic diseases [RCV002789831] Chr11:64778097 [GRCh38]
Chr11:64545569 [GRCh37]
Chr11:11q13.1
uncertain significance
NM_004630.4(SF1):c.923G>A (p.Arg308Gln) single nucleotide variant Inborn genetic diseases [RCV002875028] Chr11:64768251 [GRCh38]
Chr11:64535723 [GRCh37]
Chr11:11q13.1
uncertain significance
NM_004630.4(SF1):c.1186A>G (p.Ser396Gly) single nucleotide variant Inborn genetic diseases [RCV002708948] Chr11:64767727 [GRCh38]
Chr11:64535199 [GRCh37]
Chr11:11q13.1
uncertain significance
NM_004630.4(SF1):c.31+285C>T single nucleotide variant Inborn genetic diseases [RCV003004515] Chr11:64778077 [GRCh38]
Chr11:64545549 [GRCh37]
Chr11:11q13.1
uncertain significance
NM_004630.4(SF1):c.31+139G>C single nucleotide variant Inborn genetic diseases [RCV002940422] Chr11:64778223 [GRCh38]
Chr11:64545695 [GRCh37]
Chr11:11q13.1
uncertain significance
NM_004630.4(SF1):c.31+240T>G single nucleotide variant Inborn genetic diseases [RCV003211407] Chr11:64778122 [GRCh38]
Chr11:64545594 [GRCh37]
Chr11:11q13.1
uncertain significance
NM_004630.4(SF1):c.31+339A>C single nucleotide variant Inborn genetic diseases [RCV003302444] Chr11:64778023 [GRCh38]
Chr11:64545495 [GRCh37]
Chr11:11q13.1
uncertain significance
NM_004630.4(SF1):c.31+358C>T single nucleotide variant Inborn genetic diseases [RCV003180792] Chr11:64778004 [GRCh38]
Chr11:64545476 [GRCh37]
Chr11:11q13.1
uncertain significance
NM_004630.4(SF1):c.18C>A (p.Asn6Lys) single nucleotide variant Inborn genetic diseases [RCV003188768] Chr11:64778375 [GRCh38]
Chr11:64545847 [GRCh37]
Chr11:11q13.1
uncertain significance
NM_004630.4(SF1):c.1439C>T (p.Pro480Leu) single nucleotide variant Inborn genetic diseases [RCV003287585] Chr11:64767043 [GRCh38]
Chr11:64534515 [GRCh37]
Chr11:11q13.1
uncertain significance
NM_004630.4(SF1):c.31+54G>C single nucleotide variant Inborn genetic diseases [RCV003348175] Chr11:64778308 [GRCh38]
Chr11:64545780 [GRCh37]
Chr11:11q13.1
uncertain significance
GRCh37/hg19 11q13.1(chr11:63643711-64533636)x1 copy number loss not provided [RCV003483125] Chr11:63643711..64533636 [GRCh37]
Chr11:11q13.1
uncertain significance
GRCh37/hg19 11q12.2-13.5(chr11:59923608-76272324)x3 copy number gain not provided [RCV003484842] Chr11:59923608..76272324 [GRCh37]
Chr11:11q12.2-13.5
pathogenic
GRCh37/hg19 11q12.1-13.3(chr11:56895955-69295402)x3 copy number gain not specified [RCV003986944] Chr11:56895955..69295402 [GRCh37]
Chr11:11q12.1-13.3
likely pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:6492
Count of miRNA genes:1146
Interacting mature miRNAs:1442
Transcripts:ENST00000227503, ENST00000334944, ENST00000377387, ENST00000377390, ENST00000377394, ENST00000413725, ENST00000413951, ENST00000422298, ENST00000432725, ENST00000433274, ENST00000443908, ENST00000448404, ENST00000463343, ENST00000472725, ENST00000477596, ENST00000482693, ENST00000486867, ENST00000486960, ENST00000489544, ENST00000496969
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D11S4350  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,532,209 - 64,532,300UniSTSGRCh37
Build 361164,288,785 - 64,288,876RGDNCBI36
Celera1161,858,707 - 61,858,798RGD
Cytogenetic Map11q13UniSTS
HuRef1160,859,054 - 60,859,145UniSTS
TNG Radiation Hybrid Map1128572.0UniSTS
Stanford-G3 RH Map112805.0UniSTS
GeneMap99-G3 RH Map112805.0UniSTS
RH91433  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,532,140 - 64,532,300UniSTSGRCh37
Build 361164,288,716 - 64,288,876RGDNCBI36
Celera1161,858,638 - 61,858,798RGD
Cytogenetic Map11q13UniSTS
HuRef1160,858,985 - 60,859,145UniSTS
GeneMap99-GB4 RH Map11238.23UniSTS
SHGC-35223  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,539,138 - 64,539,267UniSTSGRCh37
Build 361164,295,714 - 64,295,843RGDNCBI36
Celera1161,865,636 - 61,865,765RGD
Cytogenetic Map11q13UniSTS
HuRef1160,866,160 - 60,866,289UniSTS
Stanford-G3 RH Map112816.0UniSTS
GeneMap99-GB4 RH Map11247.67UniSTS
Whitehead-RH Map11335.8UniSTS
NCBI RH Map11573.2UniSTS
GeneMap99-G3 RH Map112816.0UniSTS
STS-D26120  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,532,290 - 64,532,509UniSTSGRCh37
Build 361164,288,866 - 64,289,085RGDNCBI36
Celera1161,858,788 - 61,859,007RGD
Cytogenetic Map11q13UniSTS
HuRef1160,859,135 - 60,859,354UniSTS
GeneMap99-GB4 RH Map11236.71UniSTS
NCBI RH Map11573.2UniSTS
ECD00563  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,534,245 - 64,535,144UniSTSGRCh37
Build 361164,290,821 - 64,291,720RGDNCBI36
Celera1161,860,743 - 61,861,642RGD
Cytogenetic Map11q13UniSTS
HuRef1160,861,267 - 60,862,166UniSTS
ECD00564  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,543,405 - 64,544,304UniSTSGRCh37
Build 361164,299,981 - 64,300,880RGDNCBI36
Celera1161,869,903 - 61,870,803RGD
Cytogenetic Map11q13UniSTS
HuRef1160,870,427 - 60,871,327UniSTS
ECD00610  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,536,079 - 64,536,976UniSTSGRCh37
Build 361164,292,655 - 64,293,552RGDNCBI36
Celera1161,862,577 - 61,863,474RGD
Cytogenetic Map11q13UniSTS
HuRef1160,863,101 - 60,863,998UniSTS
ECD00773  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,537,037 - 64,537,927UniSTSGRCh37
Build 361164,293,613 - 64,294,503RGDNCBI36
Celera1161,863,535 - 61,864,425RGD
Cytogenetic Map11q13UniSTS
HuRef1160,864,059 - 60,864,949UniSTS
ECD00774  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,538,870 - 64,539,760UniSTSGRCh37
Build 361164,295,446 - 64,296,336RGDNCBI36
Celera1161,865,368 - 61,866,258RGD
Cytogenetic Map11q13UniSTS
HuRef1160,865,892 - 60,866,782UniSTS
ECD01224  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,542,481 - 64,543,353UniSTSGRCh37
Build 361164,299,057 - 64,299,929RGDNCBI36
Celera1161,868,979 - 61,869,851RGD
Cytogenetic Map11q13UniSTS
HuRef1160,869,503 - 60,870,375UniSTS
ECD02055  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,532,380 - 64,533,223UniSTSGRCh37
Build 361164,288,956 - 64,289,799RGDNCBI36
Celera1161,858,878 - 61,859,721RGD
Cytogenetic Map11q13UniSTS
HuRef1160,859,225 - 60,860,068UniSTS
ECD02214  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,535,167 - 64,536,004UniSTSGRCh37
Build 361164,291,743 - 64,292,580RGDNCBI36
Celera1161,861,665 - 61,862,502RGD
Cytogenetic Map11q13UniSTS
HuRef1160,862,189 - 60,863,026UniSTS
ECD02238  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,533,359 - 64,534,195UniSTSGRCh37
Build 361164,289,935 - 64,290,771RGDNCBI36
Celera1161,859,857 - 61,860,693RGD
Cytogenetic Map11q13UniSTS
HuRef1160,860,204 - 60,861,217UniSTS
ECD02969  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,544,374 - 64,545,184UniSTSGRCh37
Build 361164,300,950 - 64,301,760RGDNCBI36
Celera1161,870,873 - 61,871,683RGD
Cytogenetic Map11q13UniSTS
HuRef1160,871,397 - 60,872,207UniSTS
ECD03799  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,537,985 - 64,538,768UniSTSGRCh37
Build 361164,294,561 - 64,295,344RGDNCBI36
Celera1161,864,483 - 61,865,266RGD
Cytogenetic Map11q13UniSTS
HuRef1160,865,007 - 60,865,790UniSTS
ECD04767  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,540,612 - 64,541,366UniSTSGRCh37
Build 361164,297,188 - 64,297,942RGDNCBI36
Celera1161,867,110 - 61,867,864RGD
Cytogenetic Map11q13UniSTS
HuRef1160,867,634 - 60,868,388UniSTS
ECD05379  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,539,829 - 64,540,566UniSTSGRCh37
Build 361164,296,405 - 64,297,142RGDNCBI36
Celera1161,866,327 - 61,867,064RGD
Cytogenetic Map11q13UniSTS
HuRef1160,866,851 - 60,867,588UniSTS
ECD05866  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,541,371 - 64,542,095UniSTSGRCh37
Build 361164,297,947 - 64,298,671RGDNCBI36
Celera1161,867,869 - 61,868,593RGD
Cytogenetic Map11q13UniSTS
HuRef1160,868,393 - 60,869,117UniSTS
ECD10230  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,546,088 - 64,546,695UniSTSGRCh37
Build 361164,302,664 - 64,303,271RGDNCBI36
Celera1161,872,587 - 61,873,194RGD
Cytogenetic Map11q13UniSTS
HuRef1160,873,111 - 60,873,718UniSTS
ECD23065  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,547,613 - 64,547,812UniSTSGRCh37
Build 361164,304,189 - 64,304,388RGDNCBI36
Celera1161,874,113 - 61,874,312RGD
Cytogenetic Map11q13UniSTS
HuRef1160,874,639 - 60,874,838UniSTS
REN56360  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,531,711 - 64,531,945UniSTSGRCh37
Build 361164,288,287 - 64,288,521RGDNCBI36
Celera1161,858,209 - 61,858,443RGD
Cytogenetic Map11q13UniSTS
HuRef1160,858,556 - 60,858,790UniSTS
REN56361  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,531,921 - 64,532,145UniSTSGRCh37
Build 361164,288,497 - 64,288,721RGDNCBI36
Celera1161,858,419 - 61,858,643RGD
Cytogenetic Map11q13UniSTS
HuRef1160,858,766 - 60,858,990UniSTS
REN56362  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,532,120 - 64,532,369UniSTSGRCh37
Build 361164,288,696 - 64,288,945RGDNCBI36
Celera1161,858,618 - 61,858,867RGD
Cytogenetic Map11q13UniSTS
HuRef1160,858,965 - 60,859,214UniSTS
REN56363  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,532,346 - 64,532,576UniSTSGRCh37
Build 361164,288,922 - 64,289,152RGDNCBI36
Celera1161,858,844 - 61,859,074RGD
Cytogenetic Map11q13UniSTS
HuRef1160,859,191 - 60,859,421UniSTS
REN56364  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,532,554 - 64,532,778UniSTSGRCh37
Build 361164,289,130 - 64,289,354RGDNCBI36
Celera1161,859,052 - 61,859,276RGD
Cytogenetic Map11q13UniSTS
HuRef1160,859,399 - 60,859,623UniSTS
REN56365  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,532,761 - 64,533,019UniSTSGRCh37
Build 361164,289,337 - 64,289,595RGDNCBI36
Celera1161,859,259 - 61,859,517RGD
Cytogenetic Map11q13UniSTS
HuRef1160,859,606 - 60,859,864UniSTS
REN56366  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,533,016 - 64,533,241UniSTSGRCh37
Build 361164,289,592 - 64,289,817RGDNCBI36
Celera1161,859,514 - 61,859,739RGD
Cytogenetic Map11q13UniSTS
HuRef1160,859,861 - 60,860,086UniSTS
REN56367  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,533,169 - 64,533,396UniSTSGRCh37
Build 361164,289,745 - 64,289,972RGDNCBI36
Celera1161,859,667 - 61,859,894RGD
Cytogenetic Map11q13UniSTS
HuRef1160,860,014 - 60,860,241UniSTS
REN56368  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,533,368 - 64,533,629UniSTSGRCh37
Build 361164,289,944 - 64,290,205RGDNCBI36
Celera1161,859,866 - 61,860,127RGD
Cytogenetic Map11q13UniSTS
HuRef1160,860,213 - 60,860,474UniSTS
REN56369  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,533,621 - 64,533,858UniSTSGRCh37
Build 361164,290,197 - 64,290,434RGDNCBI36
Celera1161,860,119 - 61,860,356RGD
Cytogenetic Map11q13UniSTS
HuRef1160,860,466 - 60,860,880UniSTS
REN56370  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,533,827 - 64,534,061UniSTSGRCh37
Build 361164,290,403 - 64,290,637RGDNCBI36
Celera1161,860,325 - 61,860,559RGD
Cytogenetic Map11q13UniSTS
HuRef1160,860,849 - 60,861,083UniSTS
REN56371  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,534,058 - 64,534,317UniSTSGRCh37
Build 361164,290,634 - 64,290,893RGDNCBI36
Celera1161,860,556 - 61,860,815RGD
Cytogenetic Map11q13UniSTS
HuRef1160,861,080 - 60,861,339UniSTS
REN56372  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,534,294 - 64,534,540UniSTSGRCh37
Build 361164,290,870 - 64,291,116RGDNCBI36
Celera1161,860,792 - 61,861,038RGD
Cytogenetic Map11q13UniSTS
HuRef1160,861,316 - 60,861,562UniSTS
REN56373  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,534,520 - 64,534,769UniSTSGRCh37
Build 361164,291,096 - 64,291,345RGDNCBI36
Celera1161,861,018 - 61,861,267RGD
Cytogenetic Map11q13UniSTS
HuRef1160,861,542 - 60,861,791UniSTS
REN56374  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,534,747 - 64,535,003UniSTSGRCh37
Build 361164,291,323 - 64,291,579RGDNCBI36
Celera1161,861,245 - 61,861,501RGD
Cytogenetic Map11q13UniSTS
HuRef1160,861,769 - 60,862,025UniSTS
REN56375  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,534,953 - 64,535,202UniSTSGRCh37
Build 361164,291,529 - 64,291,778RGDNCBI36
Celera1161,861,451 - 61,861,700RGD
Cytogenetic Map11q13UniSTS
HuRef1160,861,975 - 60,862,224UniSTS
REN56376  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,535,181 - 64,535,421UniSTSGRCh37
Build 361164,291,757 - 64,291,997RGDNCBI36
Celera1161,861,679 - 61,861,919RGD
Cytogenetic Map11q13UniSTS
HuRef1160,862,203 - 60,862,443UniSTS
REN56377  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,535,411 - 64,535,681UniSTSGRCh37
Build 361164,291,987 - 64,292,257RGDNCBI36
Celera1161,861,909 - 61,862,179RGD
Cytogenetic Map11q13UniSTS
HuRef1160,862,433 - 60,862,703UniSTS
REN56378  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,535,671 - 64,535,903UniSTSGRCh37
Build 361164,292,247 - 64,292,479RGDNCBI36
Celera1161,862,169 - 61,862,401RGD
Cytogenetic Map11q13UniSTS
HuRef1160,862,693 - 60,862,925UniSTS
REN56379  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,535,901 - 64,536,140UniSTSGRCh37
Build 361164,292,477 - 64,292,716RGDNCBI36
Celera1161,862,399 - 61,862,638RGD
Cytogenetic Map11q13UniSTS
HuRef1160,862,923 - 60,863,162UniSTS
REN56380  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,536,136 - 64,536,367UniSTSGRCh37
Build 361164,292,712 - 64,292,943RGDNCBI36
Celera1161,862,634 - 61,862,865RGD
Cytogenetic Map11q13UniSTS
HuRef1160,863,158 - 60,863,389UniSTS
REN56381  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,536,351 - 64,536,601UniSTSGRCh37
Build 361164,292,927 - 64,293,177RGDNCBI36
Celera1161,862,849 - 61,863,099RGD
Cytogenetic Map11q13UniSTS
HuRef1160,863,373 - 60,863,623UniSTS
REN56382  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,536,556 - 64,536,807UniSTSGRCh37
Build 361164,293,132 - 64,293,383RGDNCBI36
Celera1161,863,054 - 61,863,305RGD
Cytogenetic Map11q13UniSTS
HuRef1160,863,578 - 60,863,829UniSTS
REN56383  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,536,784 - 64,537,023UniSTSGRCh37
Build 361164,293,360 - 64,293,599RGDNCBI36
Celera1161,863,282 - 61,863,521RGD
Cytogenetic Map11q13UniSTS
HuRef1160,863,806 - 60,864,045UniSTS
REN56384  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,536,997 - 64,537,246UniSTSGRCh37
Build 361164,293,573 - 64,293,822RGDNCBI36
Celera1161,863,495 - 61,863,744RGD
Cytogenetic Map11q13UniSTS
HuRef1160,864,019 - 60,864,268UniSTS
REN56385  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,537,223 - 64,537,482UniSTSGRCh37
Build 361164,293,799 - 64,294,058RGDNCBI36
Celera1161,863,721 - 61,863,980RGD
Cytogenetic Map11q13UniSTS
HuRef1160,864,245 - 60,864,504UniSTS
REN56386  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,537,467 - 64,537,711UniSTSGRCh37
Build 361164,294,043 - 64,294,287RGDNCBI36
Celera1161,863,965 - 61,864,209RGD
Cytogenetic Map11q13UniSTS
HuRef1160,864,489 - 60,864,733UniSTS
REN56387  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,537,678 - 64,537,927UniSTSGRCh37
Build 361164,294,254 - 64,294,503RGDNCBI36
Celera1161,864,176 - 61,864,425RGD
Cytogenetic Map11q13UniSTS
HuRef1160,864,700 - 60,864,949UniSTS
REN56388  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,537,924 - 64,538,165UniSTSGRCh37
Build 361164,294,500 - 64,294,741RGDNCBI36
Celera1161,864,422 - 61,864,663RGD
Cytogenetic Map11q13UniSTS
HuRef1160,864,946 - 60,865,187UniSTS
REN56389  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,538,142 - 64,538,403UniSTSGRCh37
Build 361164,294,718 - 64,294,979RGDNCBI36
Celera1161,864,640 - 61,864,901RGD
Cytogenetic Map11q13UniSTS
HuRef1160,865,164 - 60,865,425UniSTS
REN56390  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,538,382 - 64,538,642UniSTSGRCh37
Build 361164,294,958 - 64,295,218RGDNCBI36
Celera1161,864,880 - 61,865,140RGD
Cytogenetic Map11q13UniSTS
HuRef1160,865,404 - 60,865,664UniSTS
REN56391  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,538,626 - 64,538,874UniSTSGRCh37
Build 361164,295,202 - 64,295,450RGDNCBI36
Celera1161,865,124 - 61,865,372RGD
Cytogenetic Map11q13UniSTS
HuRef1160,865,648 - 60,865,896UniSTS
REN56392  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,538,849 - 64,539,098UniSTSGRCh37
Build 361164,295,425 - 64,295,674RGDNCBI36
Celera1161,865,347 - 61,865,596RGD
Cytogenetic Map11q13UniSTS
HuRef1160,865,871 - 60,866,120UniSTS
REN56393  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,539,087 - 64,539,326UniSTSGRCh37
Build 361164,295,663 - 64,295,902RGDNCBI36
Celera1161,865,585 - 61,865,824RGD
Cytogenetic Map11q13UniSTS
HuRef1160,866,109 - 60,866,348UniSTS
REN56394  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,539,315 - 64,539,558UniSTSGRCh37
Build 361164,295,891 - 64,296,134RGDNCBI36
Celera1161,865,813 - 61,866,056RGD
Cytogenetic Map11q13UniSTS
HuRef1160,866,337 - 60,866,580UniSTS
REN56395  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,539,554 - 64,539,781UniSTSGRCh37
Build 361164,296,130 - 64,296,357RGDNCBI36
Celera1161,866,052 - 61,866,279RGD
Cytogenetic Map11q13UniSTS
HuRef1160,866,576 - 60,866,803UniSTS
REN56396  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,539,751 - 64,539,998UniSTSGRCh37
Build 361164,296,327 - 64,296,574RGDNCBI36
Celera1161,866,249 - 61,866,496RGD
Cytogenetic Map11q13UniSTS
HuRef1160,866,773 - 60,867,020UniSTS
REN56397  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,539,975 - 64,540,233UniSTSGRCh37
Build 361164,296,551 - 64,296,809RGDNCBI36
Celera1161,866,473 - 61,866,731RGD
Cytogenetic Map11q13UniSTS
HuRef1160,866,997 - 60,867,255UniSTS
REN56398  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,540,208 - 64,540,454UniSTSGRCh37
Build 361164,296,784 - 64,297,030RGDNCBI36
Celera1161,866,706 - 61,866,952RGD
Cytogenetic Map11q13UniSTS
HuRef1160,867,230 - 60,867,476UniSTS
REN56399  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,540,449 - 64,540,687UniSTSGRCh37
Build 361164,297,025 - 64,297,263RGDNCBI36
Celera1161,866,947 - 61,867,185RGD
Cytogenetic Map11q13UniSTS
HuRef1160,867,471 - 60,867,709UniSTS
REN56400  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,540,658 - 64,540,908UniSTSGRCh37
Build 361164,297,234 - 64,297,484RGDNCBI36
Celera1161,867,156 - 61,867,406RGD
Cytogenetic Map11q13UniSTS
HuRef1160,867,680 - 60,867,930UniSTS
REN56401  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,540,899 - 64,541,156UniSTSGRCh37
Build 361164,297,475 - 64,297,732RGDNCBI36
Celera1161,867,397 - 61,867,654RGD
Cytogenetic Map11q13UniSTS
HuRef1160,867,921 - 60,868,178UniSTS
REN56402  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,541,133 - 64,541,373UniSTSGRCh37
Build 361164,297,709 - 64,297,949RGDNCBI36
Celera1161,867,631 - 61,867,871RGD
Cytogenetic Map11q13UniSTS
HuRef1160,868,155 - 60,868,395UniSTS
REN56403  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,541,348 - 64,541,603UniSTSGRCh37
Build 361164,297,924 - 64,298,179RGDNCBI36
Celera1161,867,846 - 61,868,101RGD
Cytogenetic Map11q13UniSTS
HuRef1160,868,370 - 60,868,625UniSTS
REN56404  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,541,593 - 64,541,836UniSTSGRCh37
Build 361164,298,169 - 64,298,412RGDNCBI36
Celera1161,868,091 - 61,868,334RGD
Cytogenetic Map11q13UniSTS
HuRef1160,868,615 - 60,868,858UniSTS
REN56405  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,541,812 - 64,542,044UniSTSGRCh37
Build 361164,298,388 - 64,298,620RGDNCBI36
Celera1161,868,310 - 61,868,542RGD
Cytogenetic Map11q13UniSTS
HuRef1160,868,834 - 60,869,066UniSTS
REN56406  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,541,922 - 64,542,155UniSTSGRCh37
Build 361164,298,498 - 64,298,731RGDNCBI36
Celera1161,868,420 - 61,868,653RGD
Cytogenetic Map11q13UniSTS
HuRef1160,868,944 - 60,869,177UniSTS
REN56407  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,542,461 - 64,542,686UniSTSGRCh37
Build 361164,299,037 - 64,299,262RGDNCBI36
Celera1161,868,959 - 61,869,184RGD
Cytogenetic Map11q13UniSTS
HuRef1160,869,483 - 60,869,708UniSTS
REN56408  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,542,682 - 64,542,935UniSTSGRCh37
Build 361164,299,258 - 64,299,511RGDNCBI36
Celera1161,869,180 - 61,869,433RGD
Cytogenetic Map11q13UniSTS
HuRef1160,869,704 - 60,869,957UniSTS
REN56409  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,542,907 - 64,543,138UniSTSGRCh37
Build 361164,299,483 - 64,299,714RGDNCBI36
Celera1161,869,405 - 61,869,636RGD
Cytogenetic Map11q13UniSTS
HuRef1160,869,929 - 60,870,160UniSTS
REN56410  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,543,115 - 64,543,364UniSTSGRCh37
Build 361164,299,691 - 64,299,940RGDNCBI36
Celera1161,869,613 - 61,869,862RGD
Cytogenetic Map11q13UniSTS
HuRef1160,870,137 - 60,870,386UniSTS
REN56411  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,543,335 - 64,543,602UniSTSGRCh37
Build 361164,299,911 - 64,300,178RGDNCBI36
Celera1161,869,833 - 61,870,101RGD
Cytogenetic Map11q13UniSTS
HuRef1160,870,357 - 60,870,625UniSTS
REN56412  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,543,586 - 64,543,815UniSTSGRCh37
Build 361164,300,162 - 64,300,391RGDNCBI36
Celera1161,870,085 - 61,870,314RGD
Cytogenetic Map11q13UniSTS
HuRef1160,870,609 - 60,870,838UniSTS
REN56413  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,543,780 - 64,544,051UniSTSGRCh37
Build 361164,300,356 - 64,300,627RGDNCBI36
Celera1161,870,279 - 61,870,550RGD
Cytogenetic Map11q13UniSTS
HuRef1160,870,803 - 60,871,074UniSTS
REN56414  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,544,039 - 64,544,294UniSTSGRCh37
Build 361164,300,615 - 64,300,870RGDNCBI36
Celera1161,870,538 - 61,870,793RGD
Cytogenetic Map11q13UniSTS
HuRef1160,871,062 - 60,871,317UniSTS
REN56415  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,544,280 - 64,544,543UniSTSGRCh37
Build 361164,300,856 - 64,301,119RGDNCBI36
Celera1161,870,779 - 61,871,042RGD
Cytogenetic Map11q13UniSTS
HuRef1160,871,303 - 60,871,566UniSTS
REN56416  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,544,520 - 64,544,769UniSTSGRCh37
Build 361164,301,096 - 64,301,345RGDNCBI36
Celera1161,871,019 - 61,871,268RGD
Cytogenetic Map11q13UniSTS
HuRef1160,871,543 - 60,871,792UniSTS
REN56417  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,544,760 - 64,545,005UniSTSGRCh37
Build 361164,301,336 - 64,301,581RGDNCBI36
Celera1161,871,259 - 61,871,504RGD
Cytogenetic Map11q13UniSTS
HuRef1160,871,783 - 60,872,028UniSTS
REN56418  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,544,983 - 64,545,212UniSTSGRCh37
Build 361164,301,559 - 64,301,788RGDNCBI36
Celera1161,871,482 - 61,871,711RGD
Cytogenetic Map11q13UniSTS
HuRef1160,872,006 - 60,872,235UniSTS
REN56419  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,545,886 - 64,546,135UniSTSGRCh37
Build 361164,302,462 - 64,302,711RGDNCBI36
Celera1161,872,385 - 61,872,634RGD
Cytogenetic Map11q13UniSTS
HuRef1160,872,909 - 60,873,158UniSTS
REN56420  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,546,124 - 64,546,352UniSTSGRCh37
Build 361164,302,700 - 64,302,928RGDNCBI36
Celera1161,872,623 - 61,872,851RGD
Cytogenetic Map11q13UniSTS
HuRef1160,873,147 - 60,873,375UniSTS
REN56421  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,546,347 - 64,546,609UniSTSGRCh37
Build 361164,302,923 - 64,303,185RGDNCBI36
Celera1161,872,846 - 61,873,108RGD
Cytogenetic Map11q13UniSTS
HuRef1160,873,370 - 60,873,632UniSTS
REN56422  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,546,588 - 64,546,839UniSTSGRCh37
Build 361164,303,164 - 64,303,415RGDNCBI36
Celera1161,873,087 - 61,873,339RGD
Cytogenetic Map11q13UniSTS
HuRef1160,873,611 - 60,873,865UniSTS
REN56423  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,546,664 - 64,546,885UniSTSGRCh37
Build 361164,303,240 - 64,303,461RGDNCBI36
Celera1161,873,163 - 61,873,385RGD
Cytogenetic Map11q13UniSTS
HuRef1160,873,687 - 60,873,911UniSTS
REN56424  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,547,088 - 64,547,318UniSTSGRCh37
Build 361164,303,664 - 64,303,894RGDNCBI36
Celera1161,873,588 - 61,873,818RGD
Cytogenetic Map11q13UniSTS
HuRef1160,874,114 - 60,874,344UniSTS
REN56425  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,547,274 - 64,547,530UniSTSGRCh37
Build 361164,303,850 - 64,304,106RGDNCBI36
Celera1161,873,774 - 61,874,030RGD
Cytogenetic Map11q13UniSTS
HuRef1160,874,300 - 60,874,556UniSTS
REN56426  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,547,614 - 64,547,848UniSTSGRCh37
Build 361164,304,190 - 64,304,424RGDNCBI36
Celera1161,874,114 - 61,874,348RGD
Cytogenetic Map11q13UniSTS
HuRef1160,874,640 - 60,874,874UniSTS
REN56427  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,547,834 - 64,548,098UniSTSGRCh37
Build 361164,304,410 - 64,304,674RGDNCBI36
Celera1161,874,334 - 61,874,598RGD
Cytogenetic Map11q13UniSTS
HuRef1160,874,860 - 60,875,124UniSTS
REN56428  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,548,046 - 64,548,294UniSTSGRCh37
Build 361164,304,622 - 64,304,870RGDNCBI36
Celera1161,874,546 - 61,874,794RGD
Cytogenetic Map11q13UniSTS
HuRef1160,875,072 - 60,875,320UniSTS
ZNF162  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,535,184 - 64,535,698UniSTSGRCh37
Build 361164,291,760 - 64,292,274RGDNCBI36
Celera1161,861,682 - 61,862,196RGD
Cytogenetic Map11q13UniSTS
HuRef1160,862,206 - 60,862,720UniSTS
GeneMap99-GB4 RH Map11240.19UniSTS
NCBI RH Map11573.2UniSTS
D11S4328  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,543,537 - 64,543,663UniSTSGRCh37
Build 361164,300,113 - 64,300,239RGDNCBI36
Celera1161,870,036 - 61,870,162RGD
Cytogenetic Map11q13UniSTS
HuRef1160,870,560 - 60,870,686UniSTS
GeneMap99-G3 RH Map112809.0UniSTS
G33087  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,535,897 - 64,536,015UniSTSGRCh37
Build 361164,292,473 - 64,292,591RGDNCBI36
Celera1161,862,395 - 61,862,513RGD
Cytogenetic Map11q13UniSTS
HuRef1160,862,919 - 60,863,037UniSTS
stSG635670  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,533,945 - 64,534,968UniSTSGRCh37
Build 361164,290,521 - 64,291,544RGDNCBI36
Celera1161,860,443 - 61,861,466RGD
HuRef1160,860,967 - 60,861,990UniSTS
stSG635671  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,534,974 - 64,536,004UniSTSGRCh37
Build 361164,291,550 - 64,292,580RGDNCBI36
Celera1161,861,472 - 61,862,502RGD
HuRef1160,861,996 - 60,863,026UniSTS
stSG635672  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,535,986 - 64,537,469UniSTSGRCh37
Build 361164,292,562 - 64,294,045RGDNCBI36
Celera1161,862,484 - 61,863,967RGD
HuRef1160,863,008 - 60,864,491UniSTS
stSG635673  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,537,450 - 64,538,634UniSTSGRCh37
Build 361164,294,026 - 64,295,210RGDNCBI36
Celera1161,863,948 - 61,865,132RGD
HuRef1160,864,472 - 60,865,656UniSTS
stSG635674  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,538,615 - 64,539,672UniSTSGRCh37
Build 361164,295,191 - 64,296,248RGDNCBI36
Celera1161,865,113 - 61,866,170RGD
HuRef1160,865,637 - 60,866,694UniSTS
stSG635675  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,539,653 - 64,540,916UniSTSGRCh37
Build 361164,296,229 - 64,297,492RGDNCBI36
Celera1161,866,151 - 61,867,414RGD
HuRef1160,866,675 - 60,867,938UniSTS
stSG635676  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,540,897 - 64,541,949UniSTSGRCh37
Build 361164,297,473 - 64,298,525RGDNCBI36
Celera1161,867,395 - 61,868,447RGD
HuRef1160,867,919 - 60,868,971UniSTS
stSG635677  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,541,934 - 64,543,105UniSTSGRCh37
Build 361164,298,510 - 64,299,681RGDNCBI36
Celera1161,868,432 - 61,869,603RGD
HuRef1160,868,956 - 60,870,127UniSTS
stSG635678  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,543,086 - 64,544,533UniSTSGRCh37
Build 361164,299,662 - 64,301,109RGDNCBI36
Celera1161,869,584 - 61,871,032RGD
HuRef1160,870,108 - 60,871,556UniSTS
stSG635681  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371164,546,877 - 64,548,115UniSTSGRCh37
Build 361164,303,453 - 64,304,691RGDNCBI36
Celera1161,873,377 - 61,874,615RGD
HuRef1160,873,903 - 60,875,141UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High 3 1
Medium 2432 2979 1723 622 1943 464 4355 2190 3705 415 1448 1608 171 1204 2788 4
Low 6 12 3 2 5 1 1 7 28 4 11 5 4 1 2 2
Below cutoff 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_021399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001178030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001178031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001346363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001346364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001346409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001346410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001378956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001378957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_004630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_201995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_201997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_201998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011545245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011545246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011545247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011545248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017018245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017018246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017018249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017018250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017018251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024448679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024448680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047427549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047427550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047427551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054369864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054369865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054369866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054369867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054369868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054369869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AI492561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ000051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ000052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK293753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK296237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK299705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK301803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AP001462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC000773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC011657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC020217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC032676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC069273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE745705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ230035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU624935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX095574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D26120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D26121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D26122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DC317188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DC341853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DC368015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DC370979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HF548100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L49345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L49380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y08765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y08766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000227503   ⟹   ENSP00000227503
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1164,764,606 - 64,778,747 (-)Ensembl
RefSeq Acc Id: ENST00000334944   ⟹   ENSP00000334414
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1164,764,606 - 64,778,786 (-)Ensembl
RefSeq Acc Id: ENST00000377387   ⟹   ENSP00000366604
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1164,764,606 - 64,778,469 (-)Ensembl
RefSeq Acc Id: ENST00000377390   ⟹   ENSP00000366607
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1164,764,606 - 64,778,542 (-)Ensembl
RefSeq Acc Id: ENST00000377394   ⟹   ENSP00000366611
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1164,764,606 - 64,778,747 (-)Ensembl
RefSeq Acc Id: ENST00000413725   ⟹   ENSP00000395927
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1164,765,604 - 64,767,617 (-)Ensembl
RefSeq Acc Id: ENST00000413951   ⟹   ENSP00000388470
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1164,770,297 - 64,778,507 (-)Ensembl
RefSeq Acc Id: ENST00000432725   ⟹   ENSP00000406354
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1164,770,380 - 64,777,761 (-)Ensembl
RefSeq Acc Id: ENST00000433274   ⟹   ENSP00000396793
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1164,765,652 - 64,777,760 (-)Ensembl
RefSeq Acc Id: ENST00000443908   ⟹   ENSP00000391198
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1164,765,290 - 64,767,844 (-)Ensembl
RefSeq Acc Id: ENST00000448404   ⟹   ENSP00000407962
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1164,764,606 - 64,778,747 (-)Ensembl
RefSeq Acc Id: ENST00000463343
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1164,776,046 - 64,778,763 (-)Ensembl
RefSeq Acc Id: ENST00000472725
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1164,776,046 - 64,778,037 (-)Ensembl
RefSeq Acc Id: ENST00000477596
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1164,766,414 - 64,767,646 (-)Ensembl
RefSeq Acc Id: ENST00000482693
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1164,773,023 - 64,778,504 (-)Ensembl
RefSeq Acc Id: ENST00000486867   ⟹   ENSP00000419062
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1164,764,606 - 64,778,771 (-)Ensembl
RefSeq Acc Id: ENST00000486960
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1164,769,278 - 64,770,639 (-)Ensembl
RefSeq Acc Id: ENST00000489544
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1164,768,171 - 64,769,669 (-)Ensembl
RefSeq Acc Id: ENST00000496969
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1164,769,542 - 64,771,607 (-)Ensembl
RefSeq Acc Id: ENST00000626028   ⟹   ENSP00000486693
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1164,770,034 - 64,778,763 (-)Ensembl
RefSeq Acc Id: ENST00000633899
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1164,770,278 - 64,778,542 (-)Ensembl
RefSeq Acc Id: ENST00000681407   ⟹   ENSP00000505779
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1164,764,611 - 64,778,521 (-)Ensembl
RefSeq Acc Id: ENST00000706684   ⟹   ENSP00000516498
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1164,764,614 - 64,778,533 (-)Ensembl
RefSeq Acc Id: ENST00000706685   ⟹   ENSP00000516499
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1164,764,809 - 64,778,528 (-)Ensembl
RefSeq Acc Id: ENST00000706686   ⟹   ENSP00000516500
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1164,767,759 - 64,778,542 (-)Ensembl
RefSeq Acc Id: NM_001178030   ⟹   NP_001171501
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381164,764,606 - 64,778,542 (-)NCBI
GRCh371164,532,076 - 64,546,515 (-)NCBI
HuRef1160,858,921 - 60,873,339 (-)ENTREZGENE
CHM1_11164,415,846 - 64,429,713 (-)NCBI
T2T-CHM13v2.01164,757,911 - 64,771,848 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001178031   ⟹   NP_001171502
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381164,764,606 - 64,777,761 (-)NCBI
GRCh371164,532,076 - 64,546,515 (-)NCBI
HuRef1160,858,921 - 60,873,339 (-)ENTREZGENE
CHM1_11164,415,846 - 64,429,007 (-)NCBI
T2T-CHM13v2.01164,757,911 - 64,771,067 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001346363   ⟹   NP_001333292
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381164,764,606 - 64,778,542 (-)NCBI
T2T-CHM13v2.01164,757,911 - 64,771,848 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001346364   ⟹   NP_001333293
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381164,764,606 - 64,778,542 (-)NCBI
T2T-CHM13v2.01164,757,911 - 64,771,848 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001346409   ⟹   NP_001333338
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381164,764,606 - 64,778,542 (-)NCBI
T2T-CHM13v2.01164,757,911 - 64,771,848 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001346410   ⟹   NP_001333339
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381164,764,606 - 64,778,542 (-)NCBI
T2T-CHM13v2.01164,757,911 - 64,771,848 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001378956   ⟹   NP_001365885
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381164,764,606 - 64,778,542 (-)NCBI
T2T-CHM13v2.01164,757,911 - 64,771,848 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001378957   ⟹   NP_001365886
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381164,764,606 - 64,778,542 (-)NCBI
T2T-CHM13v2.01164,757,911 - 64,771,848 (-)NCBI
Sequence:
RefSeq Acc Id: NM_004630   ⟹   NP_004621
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381164,764,606 - 64,778,542 (-)NCBI
GRCh371164,532,076 - 64,546,515 (-)NCBI
Build 361164,288,654 - 64,302,817 (-)NCBI Archive
HuRef1160,858,921 - 60,873,339 (-)ENTREZGENE
CHM1_11164,415,846 - 64,430,091 (-)NCBI
T2T-CHM13v2.01164,757,911 - 64,771,848 (-)NCBI
Sequence:
RefSeq Acc Id: NM_201995   ⟹   NP_973724
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381164,764,606 - 64,778,542 (-)NCBI
GRCh371164,532,076 - 64,546,515 (-)NCBI
Build 361164,288,654 - 64,302,817 (-)NCBI Archive
HuRef1160,858,921 - 60,873,339 (-)ENTREZGENE
CHM1_11164,415,846 - 64,430,091 (-)NCBI
T2T-CHM13v2.01164,757,911 - 64,771,848 (-)NCBI
Sequence:
RefSeq Acc Id: NM_201997   ⟹   NP_973726
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381164,764,606 - 64,778,542 (-)NCBI
GRCh371164,532,076 - 64,546,515 (-)NCBI
Build 361164,300,082 - 64,302,817 (-)NCBI Archive
HuRef1160,858,921 - 60,873,339 (-)ENTREZGENE
CHM1_11164,415,846 - 64,430,091 (-)NCBI
T2T-CHM13v2.01164,757,911 - 64,771,848 (-)NCBI
Sequence:
RefSeq Acc Id: NM_201998   ⟹   NP_973727
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381164,764,606 - 64,778,542 (-)NCBI
GRCh371164,532,076 - 64,546,515 (-)NCBI
Build 361164,288,654 - 64,302,817 (-)NCBI Archive
HuRef1160,858,921 - 60,873,339 (-)ENTREZGENE
CHM1_11164,415,846 - 64,430,091 (-)NCBI
T2T-CHM13v2.01164,757,911 - 64,771,848 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011545247   ⟹   XP_011543549
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381164,764,606 - 64,778,542 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011545248   ⟹   XP_011543550
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381164,764,606 - 64,778,542 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017018246   ⟹   XP_016873735
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381164,764,606 - 64,778,542 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047427549   ⟹   XP_047283505
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381164,764,606 - 64,778,542 (-)NCBI
RefSeq Acc Id: XM_047427550   ⟹   XP_047283506
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381164,764,606 - 64,778,542 (-)NCBI
RefSeq Acc Id: XM_047427551   ⟹   XP_047283507
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381164,764,606 - 64,778,542 (-)NCBI
RefSeq Acc Id: XM_054369864   ⟹   XP_054225839
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01164,757,911 - 64,771,848 (-)NCBI
RefSeq Acc Id: XM_054369865   ⟹   XP_054225840
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01164,757,911 - 64,771,848 (-)NCBI
RefSeq Acc Id: XM_054369866   ⟹   XP_054225841
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01164,757,911 - 64,771,848 (-)NCBI
RefSeq Acc Id: XM_054369867   ⟹   XP_054225842
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01164,757,911 - 64,771,848 (-)NCBI
RefSeq Acc Id: XM_054369868   ⟹   XP_054225843
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01164,757,911 - 64,771,848 (-)NCBI
RefSeq Acc Id: XM_054369869   ⟹   XP_054225844
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01164,757,911 - 64,771,848 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001171501 (Get FASTA)   NCBI Sequence Viewer  
  NP_001171502 (Get FASTA)   NCBI Sequence Viewer  
  NP_001333292 (Get FASTA)   NCBI Sequence Viewer  
  NP_001333293 (Get FASTA)   NCBI Sequence Viewer  
  NP_001333338 (Get FASTA)   NCBI Sequence Viewer  
  NP_001333339 (Get FASTA)   NCBI Sequence Viewer  
  NP_001365885 (Get FASTA)   NCBI Sequence Viewer  
  NP_001365886 (Get FASTA)   NCBI Sequence Viewer  
  NP_004621 (Get FASTA)   NCBI Sequence Viewer  
  NP_973724 (Get FASTA)   NCBI Sequence Viewer  
  NP_973726 (Get FASTA)   NCBI Sequence Viewer  
  NP_973727 (Get FASTA)   NCBI Sequence Viewer  
  XP_011543549 (Get FASTA)   NCBI Sequence Viewer  
  XP_011543550 (Get FASTA)   NCBI Sequence Viewer  
  XP_016873735 (Get FASTA)   NCBI Sequence Viewer  
  XP_047283505 (Get FASTA)   NCBI Sequence Viewer  
  XP_047283506 (Get FASTA)   NCBI Sequence Viewer  
  XP_047283507 (Get FASTA)   NCBI Sequence Viewer  
  XP_054225839 (Get FASTA)   NCBI Sequence Viewer  
  XP_054225840 (Get FASTA)   NCBI Sequence Viewer  
  XP_054225841 (Get FASTA)   NCBI Sequence Viewer  
  XP_054225842 (Get FASTA)   NCBI Sequence Viewer  
  XP_054225843 (Get FASTA)   NCBI Sequence Viewer  
  XP_054225844 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB03514 (Get FASTA)   NCBI Sequence Viewer  
  AAB04033 (Get FASTA)   NCBI Sequence Viewer  
  AAH00773 (Get FASTA)   NCBI Sequence Viewer  
  AAH08080 (Get FASTA)   NCBI Sequence Viewer  
  AAH08724 (Get FASTA)   NCBI Sequence Viewer  
  AAH20217 (Get FASTA)   NCBI Sequence Viewer  
  AAH38446 (Get FASTA)   NCBI Sequence Viewer  
  BAA05116 (Get FASTA)   NCBI Sequence Viewer  
  BAA05117 (Get FASTA)   NCBI Sequence Viewer  
  BAA05118 (Get FASTA)   NCBI Sequence Viewer  
  BAA05119 (Get FASTA)   NCBI Sequence Viewer  
  BAG58956 (Get FASTA)   NCBI Sequence Viewer  
  BAG61606 (Get FASTA)   NCBI Sequence Viewer  
  BAG63254 (Get FASTA)   NCBI Sequence Viewer  
  BAH11587 (Get FASTA)   NCBI Sequence Viewer  
  CAA03883 (Get FASTA)   NCBI Sequence Viewer  
  CAA70018 (Get FASTA)   NCBI Sequence Viewer  
  CAA70019 (Get FASTA)   NCBI Sequence Viewer  
  CCO13811 (Get FASTA)   NCBI Sequence Viewer  
  EAW74286 (Get FASTA)   NCBI Sequence Viewer  
  EAW74287 (Get FASTA)   NCBI Sequence Viewer  
  EAW74288 (Get FASTA)   NCBI Sequence Viewer  
  EAW74289 (Get FASTA)   NCBI Sequence Viewer  
  EAW74290 (Get FASTA)   NCBI Sequence Viewer  
  EAW74291 (Get FASTA)   NCBI Sequence Viewer  
  EAW74292 (Get FASTA)   NCBI Sequence Viewer  
  EAW74293 (Get FASTA)   NCBI Sequence Viewer  
  EAW74294 (Get FASTA)   NCBI Sequence Viewer  
  EAW74295 (Get FASTA)   NCBI Sequence Viewer  
  EAW74296 (Get FASTA)   NCBI Sequence Viewer  
  EAW74297 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000227503
  ENSP00000227503.9
  ENSP00000334414
  ENSP00000334414.5
  ENSP00000366604
  ENSP00000366604.1
  ENSP00000366607
  ENSP00000366607.3
  ENSP00000366611
  ENSP00000366611.3
  ENSP00000388470.1
  ENSP00000391198.1
  ENSP00000395927.1
  ENSP00000396793
  ENSP00000396793.2
  ENSP00000406354.1
  ENSP00000407962.1
  ENSP00000419062
  ENSP00000419062.2
  ENSP00000505779
  ENSP00000505779.1
  ENSP00000516498
  ENSP00000516498.1
  ENSP00000516499.1
  ENSP00000516500.1
GenBank Protein Q15637 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_973727   ⟸   NM_201998
- Peptide Label: isoform 3
- UniProtKB: B4DSE4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_973724   ⟸   NM_201995
- Peptide Label: isoform 2
- UniProtKB: B4DJU4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_004621   ⟸   NM_004630
- Peptide Label: isoform 1
- UniProtKB: Q9BW01 (UniProtKB/Swiss-Prot),   Q969H7 (UniProtKB/Swiss-Prot),   Q92745 (UniProtKB/Swiss-Prot),   Q92744 (UniProtKB/Swiss-Prot),   Q8IY00 (UniProtKB/Swiss-Prot),   Q15913 (UniProtKB/Swiss-Prot),   Q14819 (UniProtKB/Swiss-Prot),   Q14818 (UniProtKB/Swiss-Prot),   C9JJE2 (UniProtKB/Swiss-Prot),   B7Z1Q1 (UniProtKB/Swiss-Prot),   Q9UEI0 (UniProtKB/Swiss-Prot),   Q15637 (UniProtKB/Swiss-Prot),   B4DJU4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_973726   ⟸   NM_201997
- Peptide Label: isoform 4
- UniProtKB: A0A9L9PXR5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001171501   ⟸   NM_001178030
- Peptide Label: isoform 6
- UniProtKB: Q15637 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001171502   ⟸   NM_001178031
- Peptide Label: isoform 5
- UniProtKB: B4DJU4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011543550   ⟸   XM_011545248
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_011543549   ⟸   XM_011545247
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_016873735   ⟸   XM_017018246
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001333338   ⟸   NM_001346409
- Peptide Label: isoform 7
- UniProtKB: B4DX42 (UniProtKB/TrEMBL),   E7ESU3 (UniProtKB/TrEMBL),   B4DSE4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001333339   ⟸   NM_001346410
- Peptide Label: isoform 8
- Sequence:
RefSeq Acc Id: NP_001333293   ⟸   NM_001346364
- Peptide Label: isoform 10
- UniProtKB: A0A9L9PXR5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001333292   ⟸   NM_001346363
- Peptide Label: isoform 9
- UniProtKB: A0A9L9PXR5 (UniProtKB/TrEMBL),   H7C561 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001365885   ⟸   NM_001378956
- Peptide Label: isoform 11
- UniProtKB: A0A9L9PXE4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001365886   ⟸   NM_001378957
- Peptide Label: isoform 12
- UniProtKB: A0A7P0T9U7 (UniProtKB/TrEMBL),   B4DJU4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSP00000227503   ⟸   ENST00000227503
RefSeq Acc Id: ENSP00000334414   ⟸   ENST00000334944
RefSeq Acc Id: ENSP00000388470   ⟸   ENST00000413951
RefSeq Acc Id: ENSP00000395927   ⟸   ENST00000413725
RefSeq Acc Id: ENSP00000486693   ⟸   ENST00000626028
RefSeq Acc Id: ENSP00000366611   ⟸   ENST00000377394
RefSeq Acc Id: ENSP00000366604   ⟸   ENST00000377387
RefSeq Acc Id: ENSP00000366607   ⟸   ENST00000377390
RefSeq Acc Id: ENSP00000391198   ⟸   ENST00000443908
RefSeq Acc Id: ENSP00000406354   ⟸   ENST00000432725
RefSeq Acc Id: ENSP00000396793   ⟸   ENST00000433274
RefSeq Acc Id: ENSP00000419062   ⟸   ENST00000486867
RefSeq Acc Id: ENSP00000407962   ⟸   ENST00000448404
RefSeq Acc Id: ENSP00000505779   ⟸   ENST00000681407
RefSeq Acc Id: XP_047283507   ⟸   XM_047427551
- Peptide Label: isoform X6
RefSeq Acc Id: XP_047283506   ⟸   XM_047427550
- Peptide Label: isoform X5
RefSeq Acc Id: XP_047283505   ⟸   XM_047427549
- Peptide Label: isoform X1
RefSeq Acc Id: ENSP00000516500   ⟸   ENST00000706686
RefSeq Acc Id: ENSP00000516498   ⟸   ENST00000706684
RefSeq Acc Id: ENSP00000516499   ⟸   ENST00000706685
RefSeq Acc Id: XP_054225844   ⟸   XM_054369869
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054225843   ⟸   XM_054369868
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054225840   ⟸   XM_054369865
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054225839   ⟸   XM_054369864
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054225842   ⟸   XM_054369867
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054225841   ⟸   XM_054369866
- Peptide Label: isoform X3
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q15637-F1-model_v2 AlphaFold Q15637 1-639 view protein structure

Promoters
RGD ID:6789354
Promoter ID:HG_KWN:13258
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000143251,   OTTHUMT00000143252,   OTTHUMT00000343496
Position:
Human AssemblyChrPosition (strand)Source
Build 361164,291,411 - 64,292,882 (-)MPROMDB
RGD ID:6789353
Promoter ID:HG_KWN:13259
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000315957
Position:
Human AssemblyChrPosition (strand)Source
Build 361164,293,221 - 64,294,282 (-)MPROMDB
RGD ID:6789349
Promoter ID:HG_KWN:13260
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000143246
Position:
Human AssemblyChrPosition (strand)Source
Build 361164,294,311 - 64,295,662 (-)MPROMDB
RGD ID:6789351
Promoter ID:HG_KWN:13261
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000143250
Position:
Human AssemblyChrPosition (strand)Source
Build 361164,295,571 - 64,296,212 (-)MPROMDB
RGD ID:6789352
Promoter ID:HG_KWN:13262
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000377387,   NM_001178031,   NM_004630,   NM_201995,   NM_201997,   NM_201998,   NR_033649,   NR_033650,   OTTHUMT00000143247,   OTTHUMT00000143248,   OTTHUMT00000143249,   OTTHUMT00000157360,   OTTHUMT00000331962,   UC001OBF.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361164,301,621 - 64,303,272 (-)MPROMDB
RGD ID:7220919
Promoter ID:EPDNEW_H16204
Type:initiation region
Name:SF1_2
Description:splicing factor 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H16205  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381164,778,531 - 64,778,591EPDNEW
RGD ID:7220917
Promoter ID:EPDNEW_H16205
Type:initiation region
Name:SF1_1
Description:splicing factor 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H16204  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381164,778,769 - 64,778,829EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:12950 AgrOrtholog
COSMIC SF1 COSMIC
Ensembl Genes ENSG00000168066 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000227503 ENTREZGENE
  ENST00000227503.13 UniProtKB/Swiss-Prot
  ENST00000334944 ENTREZGENE
  ENST00000334944.9 UniProtKB/Swiss-Prot
  ENST00000377387 ENTREZGENE
  ENST00000377387.5 UniProtKB/Swiss-Prot
  ENST00000377390 ENTREZGENE
  ENST00000377390.8 UniProtKB/Swiss-Prot
  ENST00000377394 ENTREZGENE
  ENST00000377394.7 UniProtKB/Swiss-Prot
  ENST00000413725.5 UniProtKB/TrEMBL
  ENST00000413951.5 UniProtKB/TrEMBL
  ENST00000432725.1 UniProtKB/TrEMBL
  ENST00000433274 ENTREZGENE
  ENST00000433274.6 UniProtKB/Swiss-Prot
  ENST00000443908.5 UniProtKB/TrEMBL
  ENST00000448404.5 UniProtKB/TrEMBL
  ENST00000486867 ENTREZGENE
  ENST00000486867.2 UniProtKB/TrEMBL
  ENST00000681407 ENTREZGENE
  ENST00000681407.1 UniProtKB/TrEMBL
  ENST00000706684 ENTREZGENE
  ENST00000706684.1 UniProtKB/TrEMBL
  ENST00000706685.1 UniProtKB/TrEMBL
  ENST00000706686.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1370.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  6.10.140.1790 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000168066 GTEx
HGNC ID HGNC:12950 ENTREZGENE
Human Proteome Map SF1 Human Proteome Map
InterPro BBP-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH_dom_type_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH_dom_type_1_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SF1-HH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SF1-HH_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_CCHC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:7536 UniProtKB/Swiss-Prot
NCBI Gene 7536 ENTREZGENE
OMIM 601516 OMIM
PANTHER PTHR11208 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11208:SF45 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam KH_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SF1-HH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-CCHC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA37533 PharmGKB
PRINTS PRICHEXTENSN UniProtKB/TrEMBL
PROSITE KH_TYPE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_CCHC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00322 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C2HC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54791 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A7P0T9U7 ENTREZGENE, UniProtKB/TrEMBL
  A0A9L9PXE4 ENTREZGENE, UniProtKB/TrEMBL
  A0A9L9PXR5 ENTREZGENE, UniProtKB/TrEMBL
  A0A9L9PXU0_HUMAN UniProtKB/TrEMBL
  B4DJU4 ENTREZGENE, UniProtKB/TrEMBL
  B4DSE4 ENTREZGENE, UniProtKB/TrEMBL
  B4DX42 ENTREZGENE, UniProtKB/TrEMBL
  B7Z1Q1 ENTREZGENE
  C9J792_HUMAN UniProtKB/TrEMBL
  C9JJE2 ENTREZGENE
  E7ESU3 ENTREZGENE
  F8WEG7_HUMAN UniProtKB/TrEMBL
  F8WEV5_HUMAN UniProtKB/TrEMBL
  H7BZT1_HUMAN UniProtKB/TrEMBL
  H7C0N4_HUMAN UniProtKB/TrEMBL
  H7C561 ENTREZGENE, UniProtKB/TrEMBL
  L0R8E5_HUMAN UniProtKB/TrEMBL
  Q14818 ENTREZGENE
  Q14819 ENTREZGENE
  Q14820_HUMAN UniProtKB/TrEMBL
  Q15637 ENTREZGENE
  Q15913 ENTREZGENE
  Q8IY00 ENTREZGENE
  Q92744 ENTREZGENE
  Q92745 ENTREZGENE
  Q969H7 ENTREZGENE
  Q9BW01 ENTREZGENE
  Q9UEI0 ENTREZGENE
  SF01_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary B7Z1Q1 UniProtKB/Swiss-Prot
  C9JJE2 UniProtKB/Swiss-Prot
  E7ESU3 UniProtKB/TrEMBL
  Q14818 UniProtKB/Swiss-Prot
  Q14819 UniProtKB/Swiss-Prot
  Q15913 UniProtKB/Swiss-Prot
  Q8IY00 UniProtKB/Swiss-Prot
  Q92744 UniProtKB/Swiss-Prot
  Q92745 UniProtKB/Swiss-Prot
  Q969H7 UniProtKB/Swiss-Prot
  Q9BW01 UniProtKB/Swiss-Prot
  Q9UEI0 UniProtKB/Swiss-Prot