Imported Disease Annotations - ClinVarTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | genetic disease | | IAGP | (Homo sapiens) more ... | 8554872 | ClinVar Annotator: match by term: Inborn genetic diseases | ClinVar | | |
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Imported Disease Annotations - ClinVarTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | genetic disease | | IAGP | (Homo sapiens) more ... | 8554872 | ClinVar Annotator: match by term: Inborn genetic diseases | ClinVar | | |
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# | Reference Title | Reference Citation |
1. | SMPDB Annotation Import Pipeline | Pipeline to import SMPDB annotations from SMPDB into RGD |
2. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
3. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
4. | Doxorubicin pathways: pharmacodynamics and adverse effects. | Thorn CF, etal., Pharmacogenet Genomics. 2011 Jul;21(7):440-6. doi: 10.1097/FPC.0b013e32833ffb56. |
5. | Transcriptomic characteristics of bronchoalveolar lavage fluid and peripheral blood mononuclear cells in COVID-19 patients. | Xiong Y, etal., Emerg Microbes Infect. 2020 Dec;9(1):761-770. doi: 10.1080/22221751.2020.1747363. |
PMID:12089149 | PMID:12372408 | PMID:12384147 | PMID:12477932 | PMID:14702039 | PMID:15963465 | PMID:17197897 | PMID:17473959 | PMID:17559346 | PMID:17581421 | PMID:20037140 | PMID:20179710 |
PMID:20453000 | PMID:21873635 | PMID:23503679 | PMID:25772757 | PMID:25998464 | PMID:26314988 | PMID:26499074 | PMID:28036387 | PMID:28514442 | PMID:29676528 | PMID:29698084 | PMID:31182584 |
PMID:32727751 | PMID:33961781 |
SLC22A16 (Homo sapiens - human) |
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Slc22a16 (Mus musculus - house mouse) |
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Slc22a16 (Rattus norvegicus - Norway rat) |
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SLC22A16 (Pan paniscus - bonobo/pygmy chimpanzee) |
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SLC22A16 (Canis lupus familiaris - dog) |
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Slc22a16 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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SLC22A16 (Sus scrofa - pig) |
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SLC22A16 (Chlorocebus sabaeus - green monkey) |
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Variants in SLC22A16
34 total Variants |
Name | Type | Condition(s) | Position(s) | Clinical significance |
GRCh38/hg38 6q21-23.2(chr6:108944899-132067720)x1 | copy number loss | See cases [RCV000051196] | Chr6:108944899..132067720 [GRCh38] Chr6:109266102..132388860 [GRCh37] Chr6:109372795..132430553 [NCBI36] Chr6:6q21-23.2 |
pathogenic |
NM_033125.3(SLC22A16):c.792C>T (p.Val264=) | single nucleotide variant | Malignant melanoma [RCV000067068] | Chr6:110442635 [GRCh38] Chr6:110763838 [GRCh37] Chr6:110870531 [NCBI36] Chr6:6q21 |
not provided |
GRCh38/hg38 6q16.3-21(chr6:102356502-111049879)x1 | copy number loss | See cases [RCV000134806] | Chr6:102356502..111049879 [GRCh38] Chr6:102804377..111371082 [GRCh37] Chr6:102911070..111477775 [NCBI36] Chr6:6q16.3-21 |
pathogenic |
GRCh38/hg38 6q21-22.1(chr6:107370141-115827482)x1 | copy number loss | See cases [RCV000138006] | Chr6:107370141..115827482 [GRCh38] Chr6:107691345..116148646 [GRCh37] Chr6:107798038..116255339 [NCBI36] Chr6:6q21-22.1 |
pathogenic |
GRCh38/hg38 6q13-24.1(chr6:74382807-142040500)x3 | copy number gain | See cases [RCV000139729] | Chr6:74382807..142040500 [GRCh38] Chr6:75092523..142361637 [GRCh37] Chr6:75149243..142403330 [NCBI36] Chr6:6q13-24.1 |
pathogenic |
GRCh38/hg38 6q16.1-22.31(chr6:96609994-122161548)x1 | copy number loss | See cases [RCV000139465] | Chr6:96609994..122161548 [GRCh38] Chr6:97057870..122482694 [GRCh37] Chr6:97164591..122524393 [NCBI36] Chr6:6q16.1-22.31 |
pathogenic |
GRCh38/hg38 6q21(chr6:107445281-110547907)x1 | copy number loss | See cases [RCV000141382] | Chr6:107445281..110547907 [GRCh38] Chr6:107766485..110869110 [GRCh37] Chr6:107873178..110975803 [NCBI36] Chr6:6q21 |
pathogenic |
GRCh38/hg38 6q21-22.31(chr6:106503719-125781219)x1 | copy number loss | See cases [RCV000141587] | Chr6:106503719..125781219 [GRCh38] Chr6:106951594..126102365 [GRCh37] Chr6:107058287..126144058 [NCBI36] Chr6:6q21-22.31 |
pathogenic |
GRCh38/hg38 6q21(chr6:110020558-111200711)x3 | copy number gain | See cases [RCV000141546] | Chr6:110020558..111200711 [GRCh38] Chr6:110341761..111521914 [GRCh37] Chr6:110448454..111628607 [NCBI36] Chr6:6q21 |
uncertain significance |
GRCh38/hg38 6q16.3-21(chr6:103279465-113934239)x1 | copy number loss | See cases [RCV000142287] | Chr6:103279465..113934239 [GRCh38] Chr6:103727340..114255403 [GRCh37] Chr6:103834033..114362096 [NCBI36] Chr6:6q16.3-21 |
pathogenic |
GRCh38/hg38 6q16.3-22.31(chr6:100054889-120488154)x1 | copy number loss | See cases [RCV000143227] | Chr6:100054889..120488154 [GRCh38] Chr6:100502765..120809300 [GRCh37] Chr6:100609486..120850999 [NCBI36] Chr6:6q16.3-22.31 |
pathogenic |
GRCh37/hg19 6q21(chr6:109564793-112223595)x1 | copy number loss | See cases [RCV000447293] | Chr6:109564793..112223595 [GRCh37] Chr6:6q21 |
uncertain significance |
GRCh37/hg19 6q14.3-22.31(chr6:85988428-120548687)x1 | copy number loss | See cases [RCV000445666] | Chr6:85988428..120548687 [GRCh37] Chr6:6q14.3-22.31 |
pathogenic |
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482)x3 | copy number gain | See cases [RCV000512067] | Chr6:156975..170919482 [GRCh37] Chr6:6p25.3-q27 |
pathogenic |
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482) | copy number gain | See cases [RCV000510595] | Chr6:156975..170919482 [GRCh37] Chr6:6p25.3-q27 |
pathogenic |
GRCh37/hg19 6q16.1-22.1(chr6:95549951-116684929)x1 | copy number loss | not provided [RCV000682693] | Chr6:95549951..116684929 [GRCh37] Chr6:6q16.1-22.1 |
pathogenic |
GRCh37/hg19 6q21(chr6:110419878-111698827)x1 | copy number loss | not provided [RCV000682707] | Chr6:110419878..111698827 [GRCh37] Chr6:6q21 |
uncertain significance |
GRCh37/hg19 6p25.3-q27(chr6:60107-171054786)x3 | copy number gain | not provided [RCV000745400] | Chr6:60107..171054786 [GRCh37] Chr6:6p25.3-q27 |
pathogenic |
GRCh37/hg19 6p25.3-q27(chr6:108666-170980171)x3 | copy number gain | not provided [RCV000745403] | Chr6:108666..170980171 [GRCh37] Chr6:6p25.3-q27 |
pathogenic |
GRCh37/hg19 6p25.3-q27(chr6:165632-170919470)x3 | copy number gain | not provided [RCV000745404] | Chr6:165632..170919470 [GRCh37] Chr6:6p25.3-q27 |
pathogenic |
NM_033125.4(SLC22A16):c.1294G>A (p.Val432Ile) | single nucleotide variant | not provided [RCV000884537] | Chr6:110438737 [GRCh38] Chr6:110759940 [GRCh37] Chr6:6q21 |
benign |
NM_033125.4(SLC22A16):c.888C>G (p.Leu296=) | single nucleotide variant | not provided [RCV000965734] | Chr6:110442539 [GRCh38] Chr6:110763742 [GRCh37] Chr6:6q21 |
benign |
NM_033125.4(SLC22A16):c.817A>T (p.Ile273Phe) | single nucleotide variant | Inborn genetic diseases [RCV003274806] | Chr6:110442610 [GRCh38] Chr6:110763813 [GRCh37] Chr6:6q21 |
uncertain significance |
GRCh37/hg19 6q21(chr6:109564694-112232351)x1 | copy number loss | not provided [RCV001007557] | Chr6:109564694..112232351 [GRCh37] Chr6:6q21 |
uncertain significance |
GRCh37/hg19 6q16.3-22.1(chr6:101296547-117004249)x3 | copy number gain | Microcephaly [RCV001251053] | Chr6:101296547..117004249 [GRCh37] Chr6:6q16.3-22.1 |
pathogenic |
GRCh37/hg19 6q16.1-21(chr6:98949950-114533905)x1 | copy number loss | Deletion 6q16 q21 [RCV001263224] | Chr6:98949950..114533905 [GRCh37] Chr6:6q16.1-21 |
pathogenic |
GRCh37/hg19 6q21(chr6:110288308-110768384)x3 | copy number gain | not provided [RCV001259394] | Chr6:110288308..110768384 [GRCh37] Chr6:6q21 |
uncertain significance |
GRCh37/hg19 6q21(chr6:110720327-111091182)x3 | copy number gain | Seizure [RCV002284260] | Chr6:110720327..111091182 [GRCh37] Chr6:6q21 |
uncertain significance |
GRCh37/hg19 6q21(chr6:109796301-113083437)x3 | copy number gain | See cases [RCV001353182] | Chr6:109796301..113083437 [GRCh37] Chr6:6q21 |
uncertain significance |
GRCh37/hg19 6q15-22.2(chr6:92054891-118329651) | copy number loss | not specified [RCV002053598] | Chr6:92054891..118329651 [GRCh37] Chr6:6q15-22.2 |
pathogenic |
GRCh37/hg19 6q21-22.1(chr6:110472732-114762836) | copy number loss | not specified [RCV002053609] | Chr6:110472732..114762836 [GRCh37] Chr6:6q21-22.1 |
uncertain significance |
GRCh37/hg19 6q14.3-22.31(chr6:85988428-120548687) | copy number loss | not specified [RCV002053595] | Chr6:85988428..120548687 [GRCh37] Chr6:6q14.3-22.31 |
pathogenic |
GRCh37/hg19 6q21(chr6:109564793-112223595) | copy number loss | not specified [RCV002053608] | Chr6:109564793..112223595 [GRCh37] Chr6:6q21 |
uncertain significance |
NM_033125.4(SLC22A16):c.1363G>A (p.Gly455Arg) | single nucleotide variant | Inborn genetic diseases [RCV002968880] | Chr6:110435910 [GRCh38] Chr6:110757113 [GRCh37] Chr6:6q21 |
uncertain significance |
NM_033125.4(SLC22A16):c.314A>G (p.Lys105Arg) | single nucleotide variant | Inborn genetic diseases [RCV002752822] | Chr6:110456757 [GRCh38] Chr6:110777960 [GRCh37] Chr6:6q21 |
likely benign |
NM_033125.4(SLC22A16):c.445G>C (p.Asp149His) | single nucleotide variant | Inborn genetic diseases [RCV002682551] | Chr6:110456626 [GRCh38] Chr6:110777829 [GRCh37] Chr6:6q21 |
uncertain significance |
NM_033125.4(SLC22A16):c.1138T>C (p.Ser380Pro) | single nucleotide variant | Inborn genetic diseases [RCV002974289] | Chr6:110442289 [GRCh38] Chr6:110763492 [GRCh37] Chr6:6q21 |
uncertain significance |
NM_033125.4(SLC22A16):c.1669A>G (p.Thr557Ala) | single nucleotide variant | Inborn genetic diseases [RCV002661919] | Chr6:110424938 [GRCh38] Chr6:110746141 [GRCh37] Chr6:6q21 |
uncertain significance |
NM_033125.4(SLC22A16):c.1700C>T (p.Ala567Val) | single nucleotide variant | Inborn genetic diseases [RCV002926077] | Chr6:110424907 [GRCh38] Chr6:110746110 [GRCh37] Chr6:6q21 |
likely benign |
NM_033125.4(SLC22A16):c.1454G>T (p.Cys485Phe) | single nucleotide variant | Inborn genetic diseases [RCV002822789] | Chr6:110431238 [GRCh38] Chr6:110752441 [GRCh37] Chr6:6q21 |
uncertain significance |
NM_033125.4(SLC22A16):c.1346T>G (p.Val449Gly) | single nucleotide variant | Inborn genetic diseases [RCV002884816] | Chr6:110435927 [GRCh38] Chr6:110757130 [GRCh37] Chr6:6q21 |
uncertain significance |
NM_033125.4(SLC22A16):c.1456C>T (p.Arg486Cys) | single nucleotide variant | Inborn genetic diseases [RCV003001333] | Chr6:110431236 [GRCh38] Chr6:110752439 [GRCh37] Chr6:6q21 |
uncertain significance |
NM_033125.4(SLC22A16):c.724G>A (p.Ala242Thr) | single nucleotide variant | Inborn genetic diseases [RCV002707127] | Chr6:110442703 [GRCh38] Chr6:110763906 [GRCh37] Chr6:6q21 |
uncertain significance |
NM_033125.4(SLC22A16):c.1429G>A (p.Ala477Thr) | single nucleotide variant | Inborn genetic diseases [RCV002874719] | Chr6:110431263 [GRCh38] Chr6:110752466 [GRCh37] Chr6:6q21 |
uncertain significance |
NM_033125.4(SLC22A16):c.396C>G (p.Asp132Glu) | single nucleotide variant | Inborn genetic diseases [RCV002674675] | Chr6:110456675 [GRCh38] Chr6:110777878 [GRCh37] Chr6:6q21 |
uncertain significance |
NM_033125.4(SLC22A16):c.858G>C (p.Trp286Cys) | single nucleotide variant | Inborn genetic diseases [RCV002670689] | Chr6:110442569 [GRCh38] Chr6:110763772 [GRCh37] Chr6:6q21 |
uncertain significance |
NM_033125.4(SLC22A16):c.1012C>T (p.Pro338Ser) | single nucleotide variant | Inborn genetic diseases [RCV002936175] | Chr6:110442415 [GRCh38] Chr6:110763618 [GRCh37] Chr6:6q21 |
uncertain significance |
NM_033125.4(SLC22A16):c.973C>A (p.Leu325Ile) | single nucleotide variant | Inborn genetic diseases [RCV002655688] | Chr6:110442454 [GRCh38] Chr6:110763657 [GRCh37] Chr6:6q21 |
uncertain significance |
NM_033125.4(SLC22A16):c.596C>A (p.Ala199Glu) | single nucleotide variant | Inborn genetic diseases [RCV002814139] | Chr6:110446928 [GRCh38] Chr6:110768131 [GRCh37] Chr6:6q21 |
uncertain significance |
NM_033125.4(SLC22A16):c.1169A>G (p.Asn390Ser) | single nucleotide variant | Inborn genetic diseases [RCV003180598] | Chr6:110442258 [GRCh38] Chr6:110763461 [GRCh37] Chr6:6q21 |
uncertain significance |
NM_033125.4(SLC22A16):c.1222G>C (p.Ala408Pro) | single nucleotide variant | Inborn genetic diseases [RCV003188878] | Chr6:110438809 [GRCh38] Chr6:110760012 [GRCh37] Chr6:6q21 |
uncertain significance |
NM_033125.4(SLC22A16):c.541C>A (p.Arg181Ser) | single nucleotide variant | Inborn genetic diseases [RCV003372408] | Chr6:110446983 [GRCh38] Chr6:110768186 [GRCh37] Chr6:6q21 |
uncertain significance |
NM_033125.4(SLC22A16):c.313A>G (p.Lys105Glu) | single nucleotide variant | Inborn genetic diseases [RCV003383059] | Chr6:110456758 [GRCh38] Chr6:110777961 [GRCh37] Chr6:6q21 |
uncertain significance |
GRCh37/hg19 6q21(chr6:110683352-111350364)x3 | copy number gain | not specified [RCV003986664] | Chr6:110683352..111350364 [GRCh37] Chr6:6q21 |
uncertain significance |
GRCh37/hg19 6q21-23.2(chr6:110546061-131896074)x3 | copy number gain | not specified [RCV003986625] | Chr6:110546061..131896074 [GRCh37] Chr6:6q21-23.2 |
likely pathogenic |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
SHGC-143321 |
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A010A38 |
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G17048 |
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RH17540 |
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G33056 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | sensory system | adipose tissue | appendage | entire extraembryonic component | |
High | ||||||||||||||||
Medium | 1 | 10 | 10 | 28 | 10 | 2 | 315 | |||||||||
Low | 25 | 706 | 10 | 18 | 741 | 3 | 179 | 17 | 41 | 30 | 246 | 214 | 15 | 156 | 45 | 1 |
Below cutoff | 1795 | 1673 | 1131 | 366 | 599 | 227 | 3073 | 1422 | 2828 | 211 | 646 | 950 | 141 | 987 | 1909 | 1 |
RefSeq Transcripts | NM_033125 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_005267184 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_011536204 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_011536205 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_011536206 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_011536207 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_011536208 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_011536209 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_011536210 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_011536211 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_011536212 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_047419435 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_054356626 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_054356627 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_054356628 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_054356629 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_054356630 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_054356631 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_054356632 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_054356633 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_054356634 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AB055798 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AC002464 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AF268892 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AI632467 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK057306 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK304546 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AL050350 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AY145502 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC012014 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC037247 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC047565 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH471051 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CP068272 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GQ472228 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
KF458253 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENST00000330550 ⟹ ENSP00000328583 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000368919 ⟹ ENSP00000357915 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000424139 ⟹ ENSP00000401007 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000434949 ⟹ ENSP00000409306 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000437378 ⟹ ENSP00000416310 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000451557 ⟹ ENSP00000395642 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000460159 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000461487 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_033125 ⟹ NP_149116 | ||||||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_011536204 ⟹ XP_011534506 | ||||||||
Type: | CODING | ||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_011536205 ⟹ XP_011534507 | ||||||||
Type: | CODING | ||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_011536206 ⟹ XP_011534508 | ||||||||
Type: | CODING | ||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_011536207 ⟹ XP_011534509 | ||||||||
Type: | CODING | ||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_011536208 ⟹ XP_011534510 | ||||||||
Type: | CODING | ||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_011536209 ⟹ XP_011534511 | ||||||||
Type: | CODING | ||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_011536210 ⟹ XP_011534512 | ||||||||
Type: | CODING | ||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_011536211 ⟹ XP_011534513 | ||||||||
Type: | CODING | ||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_011536212 ⟹ XP_011534514 | ||||||||
Type: | CODING | ||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_047419435 ⟹ XP_047275391 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_054356626 ⟹ XP_054212601 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_054356627 ⟹ XP_054212602 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_054356628 ⟹ XP_054212603 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_054356629 ⟹ XP_054212604 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_054356630 ⟹ XP_054212605 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_054356631 ⟹ XP_054212606 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_054356632 ⟹ XP_054212607 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_054356633 ⟹ XP_054212608 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_054356634 ⟹ XP_054212609 | ||||||||
Type: | CODING | ||||||||
Position: |
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Protein RefSeqs | NP_149116 | (Get FASTA) | NCBI Sequence Viewer |
XP_011534506 | (Get FASTA) | NCBI Sequence Viewer | |
XP_011534507 | (Get FASTA) | NCBI Sequence Viewer | |
XP_011534508 | (Get FASTA) | NCBI Sequence Viewer | |
XP_011534509 | (Get FASTA) | NCBI Sequence Viewer | |
XP_011534510 | (Get FASTA) | NCBI Sequence Viewer | |
XP_011534511 | (Get FASTA) | NCBI Sequence Viewer | |
XP_011534512 | (Get FASTA) | NCBI Sequence Viewer | |
XP_011534513 | (Get FASTA) | NCBI Sequence Viewer | |
XP_011534514 | (Get FASTA) | NCBI Sequence Viewer | |
XP_047275391 | (Get FASTA) | NCBI Sequence Viewer | |
XP_054212601 | (Get FASTA) | NCBI Sequence Viewer | |
XP_054212602 | (Get FASTA) | NCBI Sequence Viewer | |
XP_054212603 | (Get FASTA) | NCBI Sequence Viewer | |
XP_054212604 | (Get FASTA) | NCBI Sequence Viewer | |
XP_054212605 | (Get FASTA) | NCBI Sequence Viewer | |
XP_054212606 | (Get FASTA) | NCBI Sequence Viewer | |
XP_054212607 | (Get FASTA) | NCBI Sequence Viewer | |
XP_054212608 | (Get FASTA) | NCBI Sequence Viewer | |
XP_054212609 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAB67044 | (Get FASTA) | NCBI Sequence Viewer |
AAH12014 | (Get FASTA) | NCBI Sequence Viewer | |
AAH47565 | (Get FASTA) | NCBI Sequence Viewer | |
AAK58593 | (Get FASTA) | NCBI Sequence Viewer | |
AAN52928 | (Get FASTA) | NCBI Sequence Viewer | |
ACV87203 | (Get FASTA) | NCBI Sequence Viewer | |
BAB71419 | (Get FASTA) | NCBI Sequence Viewer | |
BAC23062 | (Get FASTA) | NCBI Sequence Viewer | |
BAG65342 | (Get FASTA) | NCBI Sequence Viewer | |
EAW48313 | (Get FASTA) | NCBI Sequence Viewer | |
EAW48314 | (Get FASTA) | NCBI Sequence Viewer | |
EAW48315 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSP00000328583.4 | ||
ENSP00000357915 | |||
ENSP00000357915.3 | |||
ENSP00000395642 | |||
ENSP00000395642.1 | |||
ENSP00000401007.1 | |||
ENSP00000409306.1 | |||
ENSP00000416310 | |||
ENSP00000416310.1 | |||
GenBank Protein | Q86VW1 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_149116 ⟸ NM_033125 |
- UniProtKB: | Q96M90 (UniProtKB/Swiss-Prot), Q8IZD5 (UniProtKB/Swiss-Prot), Q8IUG8 (UniProtKB/Swiss-Prot), Q5JXM1 (UniProtKB/Swiss-Prot), O14567 (UniProtKB/Swiss-Prot), Q96RU0 (UniProtKB/Swiss-Prot), Q86VW1 (UniProtKB/Swiss-Prot), A0A0K0K1K9 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_011534507 ⟸ XM_011536205 |
- Peptide Label: | isoform X2 |
- UniProtKB: | X6RE50 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_011534513 ⟸ XM_011536211 |
- Peptide Label: | isoform X8 |
- Sequence: |
RefSeq Acc Id: | XP_011534510 ⟸ XM_011536208 |
- Peptide Label: | isoform X5 |
- Sequence: |
RefSeq Acc Id: | XP_011534508 ⟸ XM_011536206 |
- Peptide Label: | isoform X3 |
- Sequence: |
RefSeq Acc Id: | XP_011534511 ⟸ XM_011536209 |
- Peptide Label: | isoform X6 |
- Sequence: |
RefSeq Acc Id: | XP_011534506 ⟸ XM_011536204 |
- Peptide Label: | isoform X1 |
- Sequence: |
RefSeq Acc Id: | XP_011534509 ⟸ XM_011536207 |
- Peptide Label: | isoform X4 |
- Sequence: |
RefSeq Acc Id: | XP_011534514 ⟸ XM_011536212 |
- Peptide Label: | isoform X10 |
- Sequence: |
RefSeq Acc Id: | XP_011534512 ⟸ XM_011536210 |
- Peptide Label: | isoform X7 |
- UniProtKB: | C9JGT0 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSP00000401007 ⟸ ENST00000424139 |
RefSeq Acc Id: | ENSP00000395642 ⟸ ENST00000451557 |
RefSeq Acc Id: | ENSP00000357915 ⟸ ENST00000368919 |
RefSeq Acc Id: | ENSP00000409306 ⟸ ENST00000434949 |
RefSeq Acc Id: | ENSP00000416310 ⟸ ENST00000437378 |
RefSeq Acc Id: | ENSP00000328583 ⟸ ENST00000330550 |
RefSeq Acc Id: | XP_047275391 ⟸ XM_047419435 |
- Peptide Label: | isoform X9 |
RefSeq Acc Id: | XP_054212607 ⟸ XM_054356632 |
- Peptide Label: | isoform X8 |
RefSeq Acc Id: | XP_054212604 ⟸ XM_054356629 |
- Peptide Label: | isoform X5 |
RefSeq Acc Id: | XP_054212603 ⟸ XM_054356628 |
- Peptide Label: | isoform X3 |
RefSeq Acc Id: | XP_054212605 ⟸ XM_054356630 |
- Peptide Label: | isoform X6 |
RefSeq Acc Id: | XP_054212601 ⟸ XM_054356626 |
- Peptide Label: | isoform X1 |
RefSeq Acc Id: | XP_054212609 ⟸ XM_054356634 |
- Peptide Label: | isoform X10 |
RefSeq Acc Id: | XP_054212608 ⟸ XM_054356633 |
- Peptide Label: | isoform X9 |
RefSeq Acc Id: | XP_054212602 ⟸ XM_054356627 |
- Peptide Label: | isoform X2 |
RefSeq Acc Id: | XP_054212606 ⟸ XM_054356631 |
- Peptide Label: | isoform X7 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q86VW1-F1-model_v2 | AlphaFold | Q86VW1 | 1-577 | view protein structure |
RGD ID: | 7208883 | ||||||||
Promoter ID: | EPDNEW_H10187 | ||||||||
Type: | initiation region | ||||||||
Name: | SLC22A16_1 | ||||||||
Description: | solute carrier family 22 member 16 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
|
RGD ID: | 6804795 | ||||||||
Promoter ID: | HG_KWN:54633 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | NB4 | ||||||||
Transcripts: | ENST00000330550 | ||||||||
Position: |
|
RGD ID: | 6804796 | ||||||||
Promoter ID: | HG_KWN:54634 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | NB4 | ||||||||
Transcripts: | OTTHUMT00000043428, OTTHUMT00000043431, OTTHUMT00000043432, OTTHUMT00000043433, OTTHUMT00000043434, UC003PUE.1 | ||||||||
Position: |
|
Database | Acc Id | Source(s) |
AGR Gene | HGNC:20302 | AgrOrtholog |
COSMIC | SLC22A16 | COSMIC |
Ensembl Genes | ENSG00000004809 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ensembl Transcript | ENST00000330550.8 | UniProtKB/Swiss-Prot |
ENST00000368919 | ENTREZGENE | |
ENST00000368919.8 | UniProtKB/Swiss-Prot | |
ENST00000424139.1 | UniProtKB/TrEMBL | |
ENST00000434949.5 | UniProtKB/TrEMBL | |
ENST00000437378 | ENTREZGENE | |
ENST00000437378.5 | UniProtKB/TrEMBL | |
ENST00000451557 | ENTREZGENE | |
ENST00000451557.5 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.20.1250.20 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
GTEx | ENSG00000004809 | GTEx |
HGNC ID | HGNC:20302 | ENTREZGENE |
Human Proteome Map | SLC22A16 | Human Proteome Map |
InterPro | MFS_dom | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
MFS_sugar_transport-like | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
MFS_trans_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | hsa:85413 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
NCBI Gene | 85413 | ENTREZGENE |
OMIM | 608276 | OMIM |
PANTHER | SOLUTE CARRIER FAMILY 22 MEMBER | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
SOLUTE CARRIER FAMILY 22 MEMBER 16 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | Sugar_tr | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PharmGKB | PA134911502 | PharmGKB, RGD |
PROSITE | MFS | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Superfamily-SCOP | SSF103473 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
UniProt | A0A0K0K1K9 | ENTREZGENE, UniProtKB/TrEMBL |
C9JGT0 | ENTREZGENE, UniProtKB/TrEMBL | |
C9JTF8_HUMAN | UniProtKB/TrEMBL | |
C9JU94_HUMAN | UniProtKB/TrEMBL | |
O14567 | ENTREZGENE | |
Q5JXM1 | ENTREZGENE | |
Q86VW1 | ENTREZGENE | |
Q8IUG8 | ENTREZGENE | |
Q8IZD5 | ENTREZGENE | |
Q96ER0_HUMAN | UniProtKB/TrEMBL | |
Q96M90 | ENTREZGENE | |
Q96RU0 | ENTREZGENE | |
S22AG_HUMAN | UniProtKB/Swiss-Prot | |
X6RE50 | ENTREZGENE, UniProtKB/TrEMBL | |
UniProt Secondary | O14567 | UniProtKB/Swiss-Prot |
Q5JXM1 | UniProtKB/Swiss-Prot | |
Q8IUG8 | UniProtKB/Swiss-Prot | |
Q8IZD5 | UniProtKB/Swiss-Prot | |
Q96M90 | UniProtKB/Swiss-Prot | |
Q96RU0 | UniProtKB/Swiss-Prot |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
---|---|---|---|---|---|---|---|
2016-02-23 | SLC22A16 | solute carrier family 22 member 16 | solute carrier family 22 (organic cation/carnitine transporter), member 16 | Symbol and/or name change | 5135510 | APPROVED |