Ubash3b (ubiquitin associated and SH3 domain containing, B) - Rat Genome Database

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Gene: Ubash3b (ubiquitin associated and SH3 domain containing, B) Mus musculus
Analyze
Symbol: Ubash3b
Name: ubiquitin associated and SH3 domain containing, B
RGD ID: 1331955
MGI Page MGI
Description: Enables phosphoprotein binding activity and protein tyrosine phosphatase activity. Involved in regulation of osteoclast differentiation. Acts upstream of or within several processes, including collagen-activated tyrosine kinase receptor signaling pathway; negative regulation of bone resorption; and negative regulation of platelet aggregation. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Is expressed in several structures, including central nervous system; incisor; limb; nasal cavity epithelium; and retina. Orthologous to human UBASH3B (ubiquitin associated and SH3 domain containing B).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2810457I06Rik; BB125008; cbl-interacting protein p70; p70; Sts; STS-1; suppressor of T-cell receptor signaling 1; T-cell ubiquitin ligand 2; TULA; TULA-2; tyrosine-protein phosphatase STS1/TULA2; ubiquitin-associated and SH3 domain-containing protein B
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39940,922,056 - 41,069,358 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl940,922,394 - 41,072,993 (-)EnsemblGRCm39 Ensembl
GRCm38941,010,760 - 41,161,692 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl941,011,098 - 41,161,697 (-)EnsemblGRCm38mm10GRCm38
MGSCv37940,821,724 - 40,965,577 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36940,764,710 - 40,908,563 (-)NCBIMGSCv36mm8
MGSCv36941,219,202 - 41,364,403 (-)NCBIMGSCv36mm8
Celera938,241,137 - 38,383,815 (-)NCBICelera
Cytogenetic Map9A5.1NCBI
cM Map921.84NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,3-dinitrobenzene  (ISO)
1-nitropyrene  (ISO)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
2-palmitoylglycerol  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
arsenite(3-)  (EXP)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Butylbenzyl phthalate  (ISO)
carbamazepine  (ISO)
CGP 52608  (ISO)
chlordecone  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dibutyl phthalate  (EXP,ISO)
diethyl phthalate  (ISO)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
fulvestrant  (ISO)
gentamycin  (ISO)
ivermectin  (ISO)
lead diacetate  (EXP)
lead(0)  (ISO)
leflunomide  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
nickel atom  (ISO)
oxaliplatin  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
progesterone  (ISO)
propanal  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
testosterone  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
trichostatin A  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA)
nucleus  (IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12370296   PMID:12477932   PMID:14738763   PMID:15226823   PMID:15489334   PMID:16141072  
PMID:16141073   PMID:17490611   PMID:17679096   PMID:19733910   PMID:20585042   PMID:20670933   PMID:21267068   PMID:21393235   PMID:21677750   PMID:21873635   PMID:22267732   PMID:23149425  
PMID:24154525   PMID:24256567   PMID:24587276   PMID:25047644   PMID:25959715   PMID:26365512   PMID:26390156   PMID:27609517   PMID:27765766   PMID:28190767   PMID:28671696   PMID:30018105  
PMID:30333137   PMID:32325033   PMID:32371395   PMID:36604605  


Genomics

Comparative Map Data
Ubash3b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39940,922,056 - 41,069,358 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl940,922,394 - 41,072,993 (-)EnsemblGRCm39 Ensembl
GRCm38941,010,760 - 41,161,692 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl941,011,098 - 41,161,697 (-)EnsemblGRCm38mm10GRCm38
MGSCv37940,821,724 - 40,965,577 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36940,764,710 - 40,908,563 (-)NCBIMGSCv36mm8
MGSCv36941,219,202 - 41,364,403 (-)NCBIMGSCv36mm8
Celera938,241,137 - 38,383,815 (-)NCBICelera
Cytogenetic Map9A5.1NCBI
cM Map921.84NCBI
UBASH3B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811122,655,722 - 122,814,473 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11122,655,722 - 122,814,473 (+)EnsemblGRCh38hg38GRCh38
GRCh3711122,526,430 - 122,685,181 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611122,031,640 - 122,190,391 (+)NCBINCBI36Build 36hg18NCBI36
Celera11119,685,695 - 119,844,497 (+)NCBICelera
Cytogenetic Map11q24.1NCBI
HuRef11118,468,875 - 118,627,622 (+)NCBIHuRef
CHM1_111122,412,295 - 122,571,102 (+)NCBICHM1_1
T2T-CHM13v2.011122,683,359 - 122,842,181 (+)NCBIT2T-CHM13v2.0
Ubash3b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8850,282,510 - 50,430,034 (-)NCBIGRCr8
mRatBN7.2841,385,419 - 41,532,248 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl841,388,341 - 41,532,201 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx846,882,006 - 47,025,074 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0845,160,614 - 45,303,702 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0843,028,175 - 43,171,244 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0845,224,053 - 45,375,450 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl845,223,992 - 45,375,435 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0843,702,541 - 43,853,864 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4843,992,862 - 44,135,847 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1844,001,003 - 44,067,551 (-)NCBI
Celera840,986,547 - 41,129,756 (-)NCBICelera
Cytogenetic Map8q22NCBI
Ubash3b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541223,518,240 - 23,667,697 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541223,518,851 - 23,667,617 (+)NCBIChiLan1.0ChiLan1.0
UBASH3B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29123,357,571 - 123,515,784 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111124,462,174 - 124,620,547 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011117,489,411 - 117,647,719 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111121,410,178 - 121,567,716 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11121,410,545 - 121,563,133 (+)Ensemblpanpan1.1panPan2
UBASH3B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1511,496,254 - 11,614,769 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl511,500,669 - 11,614,675 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha511,551,610 - 11,690,824 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0511,446,452 - 11,586,409 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl511,447,895 - 11,586,395 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1511,549,978 - 11,689,276 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0511,488,972 - 11,628,138 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0511,527,189 - 11,666,755 (-)NCBIUU_Cfam_GSD_1.0
Ubash3b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947104,304,260 - 104,451,965 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365427,225,977 - 7,373,381 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365427,225,387 - 7,370,163 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBASH3B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl949,630,793 - 49,770,897 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1949,630,678 - 49,772,348 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2954,975,101 - 55,118,054 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UBASH3B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11114,053,792 - 114,218,909 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1114,054,384 - 114,218,912 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604311,913,397 - 12,072,484 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ubash3b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248802,270,679 - 2,427,298 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248802,269,247 - 2,427,531 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ubash3b
5696 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2027
Count of miRNA genes:813
Interacting mature miRNAs:1037
Transcripts:ENSMUST00000044155, ENSMUST00000124819, ENSMUST00000129906, ENSMUST00000132996, ENSMUST00000136530, ENSMUST00000151485
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13504833Bglu19_mblood glucose level 19 (mouse)9991076843910768Mouse
1300532Tbs2_mtuberculosis severity 2 (mouse)Not determined91236997046370114Mouse
10043917Obq37_mobesity QTL 37 (mouse)Not determined91339117547391175Mouse
1357637Si5lq2_mserum IGFBP-5 level QTL 2 (mouse)Not determined91541175149411890Mouse
4141591Cq4_mcholesterol QTL 4 (mouse)Not determined91541175149411890Mouse
1301421Lgth4_mbody length 4 (mouse)Not determined91541175149411890Mouse
4141447Cfmq2_mcystic fibrosis modifier QTL 2 (mouse)Not determined91541175149411890Mouse
12790993Adq1_maortic diameter QTL 1 (mouse)91574962749749627Mouse
11354951Pdcc3_mplasmacytoid dentritic cell compartment 3 (mouse)91574962749749627Mouse
12790997Adq2_maortic diameter QTL 2 (mouse)91574962749749627Mouse
12880415V125Dq7_mvitamin D active form serum level QTL 7 (mouse)91601129650011296Mouse
12880416V125Dq8_mvitamin D active form serum level QTL 8 (mouse)91601129650011296Mouse
13504834Hdlq109_mHDL QTL 109 (mouse)91670964150709641Mouse
1357465Vtbt6_mvertebral trabecular bone trait 6 (mouse)Not determined91697884050978943Mouse
1300643Pvcan2_mprotection against vaginal candidiasis 2 (mouse)Not determined91994340653943525Mouse
1301439Morph2_mmorphine antinociception 2 (mouse)Not determined92015336254153492Mouse
1301883Skull12_mskull morphology 12 (mouse)Not determined92030619754306370Mouse
1301045Sluc10_msusceptibility to lung cancer 10 (mouse)Not determined92030619754306370Mouse
10043950Pbft5_mpercent body fat 5 (mouse)Not determined92030619754306370Mouse
4142352Lmr17_mleishmaniasis resistance 17 (mouse)Not determined92030619754306370Mouse
12904939Edlmmq8_mextensor digitorum longus muscle mass QTL 8 (mouse)92085274054852740Mouse
13208563Bmiq8_mbody mass index QTL 8 (mouse)92491129668907282Mouse
11532712Sluc39d_msusceptibility to lung cancer 39d (mouse)92558748559587581Mouse
11532696Sluc39c_msusceptibility to lung cancer 39c (mouse)92558748559587581Mouse
11532694Sluc39a_msusceptibility to lung cancer 39a (mouse)92558748559587581Mouse
11532695Sluc39b_msusceptibility to lung cancer 39b (mouse)92558748559587581Mouse
10043987Stheal13_msoft tissue heal 13 (mouse)Not determined92679642160796552Mouse
1300932Hdlq17_mHDL QTL 17 (mouse)Not determined92679642160796552Mouse
10043867Mtbcq9_mmultiple trait body composition QTL 9 (mouse)Not determined92679642160796552Mouse
10043878Adip20_madiposity 20 (mouse)Not determined92725119461251323Mouse
1301000Obq5_mobesity QTL 5 (mouse)Not determined92850333341799326Mouse
10043847Hdlq89_mHDL QTL 89 (mouse)Not determined92929292963293072Mouse
1301782Chol11_mcholesterol 11 (mouse)Not determined92929292963293072Mouse
1301365Ap5q_malcohol preference 5 QTL (mouse)Not determined93005316464053277Mouse
1357746Vtbt7_mvertebral trabecular bone trait 7 (mouse)Not determined93073991564740021Mouse
1302180Actd4_mactivity-distance traveled 4 (mouse)Not determined93243456366434857Mouse
4141148Cq5_mcholesterol QTL 5 (mouse)Not determined93245242166452546Mouse
1301692Hts_mhypothermia sensitivity (mouse)Not determined93251117266511421Mouse
4141323Ptnu3_mproteinuria 3 (mouse)Not determined93288970266889836Mouse
1357709Si5lq3_mserum IGFBP-5 level QTL 3 (mouse)Not determined93311102567111140Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93397884073439255Mouse
1357682Phdlc1_mplasma HDL cholesterol 1 (mouse)Not determined93410461942764866Mouse
1301252Etohc3_methanol consumption 3 (mouse)Not determined93503447869034599Mouse
1301972Cocrb8_mcocaine related behavior 8 (mouse)Not determined93503447869034599Mouse
1558968Tbdr1_mbody temperature response to dietary restriction, QTL 1 (mouse)Not determined93503447869034599Mouse
10045613Rapop7_mradiation-induced apoptosis 6 (mouse)Not determined93673624349420511Mouse
1301501Lmr2_mleishmaniasis resistance 2 (mouse)Not determined93694340650111140Mouse
1301007Pid2_mprion incubation determinant 2 (mouse)Not determined93715336244251323Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
10043971Obq32_mobesity QTL 32 (mouse)Not determined93781952871819528Mouse
12790986Pcho9_mplasma cholesterol 9 (mouse)93809957572099575Mouse
12790992Arlsq1_maortic root lesion size QTL 1 (mouse)93809957572099575Mouse
12791002Arlsq2_maortic root lesion size QTL 2 (mouse)93809957572099575Mouse
12738449Spcq2_msperm count QTL 2 (mouse)93939988573399885Mouse
1558993Tdmq1_mtype 2 diabetes modifying QTL 1 (mouse)Not determined94041959451808670Mouse
4141071Ath29_matherosclerosis 29 (mouse)Not determined94041959474607925Mouse
11532693Sluc39_msusceptibility to lung cancer 39 (mouse)94064537448351476Mouse
1301702Brm1_mbrachyury modifier 1 (mouse)Not determined94080504774805204Mouse

Markers in Region
BB125008  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38941,013,699 - 41,013,808UniSTSGRCm38
MGSCv37940,821,782 - 40,821,891UniSTSGRCm37
Celera938,241,195 - 38,241,304UniSTS
Cytogenetic Map9A5.1UniSTS
Whitehead/MRC_RH9440.6UniSTS
D9Mit286  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38941,121,479 - 41,121,586UniSTSGRCm38
MGSCv37940,929,562 - 40,929,669UniSTSGRCm37
Celera938,348,158 - 38,348,247UniSTS
Cytogenetic Map9A5.1UniSTS
cM Map923.0UniSTS
Whitehead Genetic917.5UniSTS
Whitehead/MRC_RH9460.98UniSTS
Whitehead_YAC9 UniSTS
UniSTS:236100  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38941,014,183 - 41,014,450UniSTSGRCm38
MGSCv37940,822,266 - 40,822,533UniSTSGRCm37
Celera938,241,681 - 38,241,948UniSTS
Cytogenetic Map9A5.1UniSTS
UniSTS:236101  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38941,014,761 - 41,014,966UniSTSGRCm38
MGSCv37940,822,844 - 40,823,049UniSTSGRCm37
Celera938,242,262 - 38,242,467UniSTS
Cytogenetic Map9A5.1UniSTS
AU049662  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38941,110,654 - 41,110,854UniSTSGRCm38
MGSCv37940,918,737 - 40,918,937UniSTSGRCm37
Celera938,336,271 - 38,336,443UniSTS
Celera938,334,335 - 38,334,553UniSTS
Cytogenetic Map9A5.1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001357412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_176860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB075602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC156031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC159820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC053436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000044155   ⟹   ENSMUSP00000043865
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl940,922,394 - 41,069,358 (-)Ensembl
GRCm38.p6 Ensembl941,011,098 - 41,158,062 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124819
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl940,961,822 - 41,072,816 (-)Ensembl
GRCm38.p6 Ensembl941,050,526 - 41,161,520 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129906   ⟹   ENSMUSP00000134923
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl940,961,908 - 41,072,984 (-)Ensembl
GRCm38.p6 Ensembl941,050,612 - 41,161,688 (-)Ensembl
RefSeq Acc Id: ENSMUST00000132996
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl941,071,142 - 41,072,993 (-)Ensembl
GRCm38.p6 Ensembl941,159,846 - 41,161,697 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136530   ⟹   ENSMUSP00000114176
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl940,961,850 - 41,068,798 (-)Ensembl
GRCm38.p6 Ensembl941,050,554 - 41,157,502 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151485   ⟹   ENSMUSP00000116038
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl940,926,017 - 40,990,802 (-)Ensembl
GRCm38.p6 Ensembl941,014,721 - 41,079,506 (-)Ensembl
RefSeq Acc Id: NM_001357412   ⟹   NP_001344341
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39940,924,922 - 40,990,802 (-)NCBI
GRCm38941,013,626 - 41,079,506 (-)NCBI
Sequence:
RefSeq Acc Id: NM_176860   ⟹   NP_789830
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39940,924,922 - 41,069,358 (-)NCBI
GRCm38941,013,626 - 41,158,062 (-)NCBI
MGSCv37940,821,724 - 40,965,577 (-)RGD
Celera938,241,137 - 38,383,815 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006510632   ⟹   XP_006510695
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39940,922,056 - 41,069,353 (-)NCBI
GRCm38941,010,760 - 41,158,057 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006510636   ⟹   XP_006510699
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39940,922,056 - 41,068,784 (-)NCBI
GRCm38941,010,760 - 41,157,315 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017313612   ⟹   XP_017169101
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39940,922,056 - 40,971,344 (-)NCBI
GRCm38941,010,760 - 41,060,048 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244638   ⟹   XP_030100498
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39940,922,056 - 40,964,616 (-)NCBI
GRCm38941,010,760 - 41,053,320 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_789830   ⟸   NM_176860
- Peptide Label: isoform 1
- UniProtKB: Q3U8Z2 (UniProtKB/Swiss-Prot),   Q8BMW9 (UniProtKB/Swiss-Prot),   Q8BGG7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006510695   ⟸   XM_006510632
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006510699   ⟸   XM_006510636
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017169101   ⟸   XM_017313612
- Peptide Label: isoform X3
- UniProtKB: Q8BGG7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030100498   ⟸   XM_030244638
- Peptide Label: isoform X3
RefSeq Acc Id: NP_001344341   ⟸   NM_001357412
- Peptide Label: isoform 2
RefSeq Acc Id: ENSMUSP00000116038   ⟸   ENSMUST00000151485
RefSeq Acc Id: ENSMUSP00000134923   ⟸   ENSMUST00000129906
RefSeq Acc Id: ENSMUSP00000043865   ⟸   ENSMUST00000044155
RefSeq Acc Id: ENSMUSP00000114176   ⟸   ENSMUST00000136530
Protein Domains
SH3   UBA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BGG7-F1-model_v2 AlphaFold Q8BGG7 1-638 view protein structure

Promoters
RGD ID:6845295
Promoter ID:MM_KWN:57019
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour
Transcripts:OTTMUST00000063836
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36940,887,736 - 40,888,236 (-)MPROMDB
RGD ID:6845298
Promoter ID:MM_KWN:57020
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung
Transcripts:OTTMUST00000063835,   OTTMUST00000063840
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36940,965,556 - 40,966,517 (-)MPROMDB
RGD ID:6845296
Promoter ID:MM_KWN:57021
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:OTTMUST00000063837,   OTTMUST00000063838,   OTTMUST00000063839
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36940,969,376 - 40,969,876 (-)MPROMDB
RGD ID:8669304
Promoter ID:EPDNEW_M12683
Type:initiation region
Name:Ubash3b_1
Description:Mus musculus ubiquitin associated and SH3 domain containing,B , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38941,157,494 - 41,157,554EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1920078 AgrOrtholog
Ensembl Genes ENSMUSG00000032020 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000044155 ENTREZGENE
  ENSMUST00000044155.15 UniProtKB/Swiss-Prot
  ENSMUST00000129906.2 UniProtKB/TrEMBL
  ENSMUST00000136530.8 UniProtKB/TrEMBL
  ENSMUST00000151485 ENTREZGENE
  ENSMUST00000151485.8 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.1240 UniProtKB/Swiss-Prot
  Cyclic phosphodiesterase UniProtKB/Swiss-Prot
  DNA helicase RuvA subunit, C-terminal domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 Domains UniProtKB/Swiss-Prot
InterPro His_Pase_superF_clade-1 UniProtKB/Swiss-Prot
  His_PPase_superfam UniProtKB/Swiss-Prot
  SH3-like_dom_sf UniProtKB/Swiss-Prot
  SH3_domain UniProtKB/Swiss-Prot
  UBA UniProtKB/Swiss-Prot
  UBA-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBASH3B_SH3 UniProtKB/Swiss-Prot
KEGG Report mmu:72828 UniProtKB/Swiss-Prot
MGD MGI:1920078 ENTREZGENE
NCBI Gene 72828 ENTREZGENE
PANTHER UBIQUITIN-ASSOCIATED AND SH3 DOMAIN-CONTAINING BA-RELATED UniProtKB/Swiss-Prot
  UBIQUITIN-ASSOCIATED AND SH3 DOMAIN-CONTAINING PROTEIN B UniProtKB/Swiss-Prot
Pfam His_Phos_1 UniProtKB/Swiss-Prot
  SH3_9 UniProtKB/Swiss-Prot
  UBA UniProtKB/Swiss-Prot
PhenoGen Ubash3b PhenoGen
PROSITE SH3 UniProtKB/Swiss-Prot
  UBA UniProtKB/Swiss-Prot
SMART SH3 UniProtKB/Swiss-Prot
  UBA UniProtKB/Swiss-Prot
Superfamily-SCOP SSF46934 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50044 UniProtKB/Swiss-Prot
  SSF53254 UniProtKB/Swiss-Prot
UniProt D3YVT5_MOUSE UniProtKB/TrEMBL
  H3BJB9_MOUSE UniProtKB/TrEMBL
  Q3U8Z2 ENTREZGENE
  Q8BGG7 ENTREZGENE
  Q8BMW9 ENTREZGENE
  UBS3B_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3U8Z2 UniProtKB/Swiss-Prot
  Q8BMW9 UniProtKB/Swiss-Prot