Snx14 (sorting nexin 14) - Rat Genome Database

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Gene: Snx14 (sorting nexin 14) Mus musculus
Analyze
Symbol: Snx14
Name: sorting nexin 14
RGD ID: 1322102
MGI Page MGI
Description: Predicted to enable phosphatidylinositol-3,5-bisphosphate binding activity. Involved in postsynaptic modulation of chemical synaptic transmission. Located in postsynapse. Is active in synapse. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 20. Orthologous to human SNX14 (sorting nexin 14).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: B830022K16; C330035N22Rik; sorting nexin-14; YR-1; YR-14
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39988,258,805 - 88,320,982 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl988,258,800 - 88,321,011 (-)EnsemblGRCm39 Ensembl
GRCm38988,376,755 - 88,438,929 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl988,376,750 - 88,438,958 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl988,376,747 - 88,438,958 (-)EnsemblGRCm38mm10GRCm38
MGSCv37988,271,585 - 88,333,789 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36988,174,668 - 88,236,822 (-)NCBIMGSCv36mm8
Celera985,403,829 - 85,465,439 (-)NCBICelera
Cytogenetic Map9E3.1NCBI
cM Map947.24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11500980   PMID:12477932   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:16602821   PMID:21873635   PMID:23055939   PMID:24316575   PMID:24859318   PMID:25795301   PMID:32554809   PMID:32792680  


Genomics

Comparative Map Data
Snx14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39988,258,805 - 88,320,982 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl988,258,800 - 88,321,011 (-)EnsemblGRCm39 Ensembl
GRCm38988,376,755 - 88,438,929 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl988,376,750 - 88,438,958 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl988,376,747 - 88,438,958 (-)EnsemblGRCm38mm10GRCm38
MGSCv37988,271,585 - 88,333,789 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36988,174,668 - 88,236,822 (-)NCBIMGSCv36mm8
Celera985,403,829 - 85,465,439 (-)NCBICelera
Cytogenetic Map9E3.1NCBI
cM Map947.24NCBI
SNX14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38685,505,496 - 85,593,858 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl685,504,776 - 85,594,156 (-)EnsemblGRCh38hg38GRCh38
GRCh37686,215,214 - 86,303,576 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36686,271,933 - 86,360,348 (-)NCBINCBI36Build 36hg18NCBI36
Build 34686,271,935 - 86,360,348NCBI
Celera686,642,396 - 86,730,827 (-)NCBICelera
Cytogenetic Map6q14.3NCBI
HuRef683,439,499 - 83,527,927 (-)NCBIHuRef
CHM1_1686,313,156 - 86,401,522 (-)NCBICHM1_1
T2T-CHM13v2.0686,722,300 - 86,810,666 (-)NCBIT2T-CHM13v2.0
Snx14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8898,053,769 - 98,278,287 (-)NCBIGRCr8
mRatBN7.2889,283,673 - 89,390,597 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl889,298,114 - 89,390,580 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx894,990,651 - 95,060,048 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0893,189,862 - 93,259,261 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0891,049,278 - 91,118,582 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0896,018,943 - 96,088,405 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl896,023,445 - 96,088,405 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0895,518,745 - 95,583,948 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4893,645,995 - 93,711,298 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1893,665,874 - 93,730,750 (-)NCBI
Celera888,891,510 - 88,960,133 (-)NCBICelera
Cytogenetic Map8q31NCBI
Snx14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541112,969,114 - 13,048,836 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541112,967,980 - 13,048,839 (-)NCBIChiLan1.0ChiLan1.0
SNX14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25105,594,163 - 105,694,265 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16103,488,692 - 103,585,762 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0683,389,608 - 83,477,859 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1686,671,608 - 86,759,187 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl686,671,608 - 86,759,118 (-)Ensemblpanpan1.1panPan2
SNX14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11245,526,042 - 45,598,868 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1245,518,721 - 45,599,012 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1245,340,809 - 45,413,610 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01246,295,243 - 46,368,369 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1246,295,255 - 46,368,497 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11245,628,679 - 45,701,471 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01245,557,567 - 45,630,672 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01245,744,588 - 45,817,744 (-)NCBIUU_Cfam_GSD_1.0
Snx14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494680,684,221 - 80,785,553 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365105,685,017 - 5,786,703 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365105,685,342 - 5,786,672 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNX14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl154,460,640 - 54,547,216 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1154,460,645 - 54,547,204 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2160,891,438 - 60,977,555 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SNX14
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11310,172,960 - 10,265,852 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1310,173,023 - 10,265,766 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040186,342,607 - 186,451,385 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snx14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247998,670,883 - 8,753,631 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247998,695,488 - 8,754,094 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Snx14
2231 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1016
Count of miRNA genes:493
Interacting mature miRNAs:598
Transcripts:ENSMUST00000126405, ENSMUST00000126563, ENSMUST00000140439, ENSMUST00000165315, ENSMUST00000173011, ENSMUST00000173039, ENSMUST00000174806
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49452421101406120Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95203447899792481Mouse
12790990Tgl7_mtriglyceride 7 (mouse)95455996088559960Mouse
10043877Adip21_madiposity 21 (mouse)Not determined95643910890439255Mouse
1301803Stheal9_msoft tissue heal 9 (mouse)Not determined95902438793024534Mouse
1301172Fembrs6_mfemur breaking strength 6 (mouse)Not determined95902438793024534Mouse
1301456Adip5_madiposity 5 (mouse)Not determined95936994693370128Mouse
1300848Skull13_mskull morphology 13 (mouse)Not determined95936994693370128Mouse
5491195Mobq8_mmultigenic obesity QTL 8 (mouse)Not determined95936994693370128Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959897283109089068Mouse
1301611Lrnx3_mlearning contextual 3 (mouse)Not determined96214976796149881Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63239711120191934Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63239711120191934Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963239711120191934Mouse
11081165Psl6_mpromotion susceptibility QTL 6 (mouse)96504119195522808Mouse
1301636Lith5_mlithogenic gene 5 (mouse)Not determined966089077100089175Mouse
10045638Heal29_mwound healing/regeneration 29 (mouse)Not determined967006220101006220Mouse
1357610Vtbt8_mvertebral trabecular bone trait 8 (mouse)Not determined968779563102779705Mouse
1301924Bmd10_mbone mineral density 10 (mouse)Not determined968779563102779705Mouse
1301302Pas4_mpulmonary adenoma susceptibility 4 (mouse)Not determined969121898103121973Mouse
10412174Habiir4_mhyperoxic acute lung injury imprinted region 4 (mouse)Not determined96926774798701707Mouse
1301621Hpic1_mhaloperidol-induced catalepsy 1 (mouse)Not determined969428566103428698Mouse
1301573Etohcta8_methanol conditioned taste aversion 8 (mouse)Not determined972859058106859205Mouse
10054068El8_mepilepsy 8 (mouse)Not determined972859058106859205Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974250230108250378Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975682646114303447Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975682646114303447Mouse
1301869Tbbmd4_mtotal body bone mineral density 4 (mouse)Not determined976024387101406120Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976417989110418183Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978522698112522808Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979279863113279941Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981680321115680445Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982792386116792481Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982792386116792481Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982792386116792481Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984406017118406120Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985779563108518385Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986107600120107729Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986121898120118690Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986625682120625682Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987677199121677199Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001359958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC116713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC043328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC080799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY013426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY698327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT025673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000126405   ⟹   ENSMUSP00000116773
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl988,263,592 - 88,320,982 (-)Ensembl
GRCm38.p6 Ensembl988,381,539 - 88,438,929 (-)Ensembl
RefSeq Acc Id: ENSMUST00000126563
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl988,301,751 - 88,320,965 (-)Ensembl
GRCm38.p6 Ensembl988,419,698 - 88,438,912 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140439
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl988,258,805 - 88,280,674 (-)Ensembl
GRCm38.p6 Ensembl988,376,752 - 88,398,621 (-)Ensembl
RefSeq Acc Id: ENSMUST00000165315   ⟹   ENSMUSP00000130116
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl988,258,803 - 88,321,004 (-)Ensembl
GRCm38.p6 Ensembl988,376,750 - 88,438,951 (-)Ensembl
RefSeq Acc Id: ENSMUST00000173011   ⟹   ENSMUSP00000133507
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl988,258,805 - 88,320,951 (-)Ensembl
GRCm38.p6 Ensembl988,376,752 - 88,438,898 (-)Ensembl
RefSeq Acc Id: ENSMUST00000173039   ⟹   ENSMUSP00000133624
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl988,258,817 - 88,321,011 (-)Ensembl
GRCm38.p6 Ensembl988,376,764 - 88,438,958 (-)Ensembl
RefSeq Acc Id: ENSMUST00000174806   ⟹   ENSMUSP00000133533
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl988,258,820 - 88,320,967 (-)Ensembl
GRCm38.p6 Ensembl988,376,767 - 88,438,914 (-)Ensembl
RefSeq Acc Id: ENSMUST00000187610
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl988,274,259 - 88,276,527 (-)Ensembl
GRCm38.p6 Ensembl988,392,206 - 88,394,474 (-)Ensembl
RefSeq Acc Id: ENSMUST00000239462   ⟹   ENSMUSP00000159306
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl988,258,800 - 88,321,004 (-)Ensembl
GRCm38.p6 Ensembl988,376,747 - 88,438,951 (-)Ensembl
RefSeq Acc Id: NM_001359958   ⟹   NP_001346887
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39988,258,808 - 88,320,982 (-)NCBI
GRCm38988,376,755 - 88,438,929 (-)NCBI
Sequence:
RefSeq Acc Id: NM_172926   ⟹   NP_766514
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39988,258,808 - 88,320,982 (-)NCBI
GRCm38988,376,755 - 88,438,929 (-)NCBI
MGSCv37988,271,585 - 88,333,789 (-)RGD
Celera985,403,829 - 85,465,439 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036155012   ⟹   XP_036010905
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39988,258,805 - 88,286,327 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_766514   ⟸   NM_172926
- Peptide Label: isoform 1
- UniProtKB: Q8BHY8 (UniProtKB/Swiss-Prot),   G3UWA3 (UniProtKB/Swiss-Prot),   B0V2Q4 (UniProtKB/Swiss-Prot),   A0A6Q6RCM4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001346887   ⟸   NM_001359958
- Peptide Label: isoform 2
- UniProtKB: Q8BHY8 (UniProtKB/Swiss-Prot),   G3UWA3 (UniProtKB/Swiss-Prot),   B0V2Q4 (UniProtKB/Swiss-Prot),   G3UX33 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000159306   ⟸   ENSMUST00000239462
RefSeq Acc Id: ENSMUSP00000116773   ⟸   ENSMUST00000126405
RefSeq Acc Id: ENSMUSP00000130116   ⟸   ENSMUST00000165315
RefSeq Acc Id: ENSMUSP00000133533   ⟸   ENSMUST00000174806
RefSeq Acc Id: ENSMUSP00000133624   ⟸   ENSMUST00000173039
RefSeq Acc Id: ENSMUSP00000133507   ⟸   ENSMUST00000173011
RefSeq Acc Id: XP_036010905   ⟸   XM_036155012
- Peptide Label: isoform X1
- UniProtKB: Q80XP2 (UniProtKB/TrEMBL)
Protein Domains
PX   PXA   RGS

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BHY8-F1-model_v2 AlphaFold Q8BHY8 1-964 view protein structure

Promoters
RGD ID:6845195
Promoter ID:MM_KWN:58298
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Liver,   Lung,   MEF_B4
Transcripts:NM_172926,   OTTMUST00000076297,   UC009QYM.1,   UC009QYN.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36988,333,454 - 88,333,954 (-)MPROMDB
RGD ID:8670380
Promoter ID:EPDNEW_M13220
Type:single initiation site
Name:AK162765_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38988,394,529 - 88,394,589EPDNEW
RGD ID:8670382
Promoter ID:EPDNEW_M13221
Type:multiple initiation site
Name:Snx14_1
Description:Mus musculus sorting nexin 14 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38988,438,929 - 88,438,989EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2155664 AgrOrtholog
Ensembl Genes ENSMUSG00000032422 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000126405.3 UniProtKB/TrEMBL
  ENSMUST00000165315 ENTREZGENE
  ENSMUST00000165315.9 UniProtKB/TrEMBL
  ENSMUST00000173011.9 UniProtKB/TrEMBL
  ENSMUST00000173039.9 UniProtKB/TrEMBL
  ENSMUST00000174806 ENTREZGENE
  ENSMUST00000174806.9 UniProtKB/TrEMBL
  ENSMUST00000239462.2 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.167.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.1520.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Phox UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Phox_assoc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PX_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RGS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RGS_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RGS_subdomain_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNX14_PX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNX14_RGS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sorting_nexin_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:244962 UniProtKB/Swiss-Prot
MGD MGI:2155664 ENTREZGENE
NCBI Gene 244962 ENTREZGENE
PANTHER SORTING NEXIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SORTING NEXIN-14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Nexin_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00787 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PXA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RGS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Snx14 PhenoGen
PROSITE PS50195 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PXA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RGS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PXA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RGS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00312 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48097 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF64268 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A6Q6RCM4 ENTREZGENE, UniProtKB/TrEMBL
  B0V2Q4 ENTREZGENE
  D6RH84_MOUSE UniProtKB/TrEMBL
  G3UWA3 ENTREZGENE
  G3UX13_MOUSE UniProtKB/TrEMBL
  G3UX33 ENTREZGENE, UniProtKB/TrEMBL
  G3UXB6_MOUSE UniProtKB/TrEMBL
  Q80XP2 ENTREZGENE, UniProtKB/TrEMBL
  Q8BHY8 ENTREZGENE
  Q8BHZ1_MOUSE UniProtKB/TrEMBL
  SNX14_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary B0V2Q4 UniProtKB/Swiss-Prot
  G3UWA3 UniProtKB/Swiss-Prot