Snx14 (sorting nexin 14) - Rat Genome Database

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Gene: Snx14 (sorting nexin 14) Ictidomys tridecemlineatus
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Symbol: Snx14
Name: sorting nexin 14
RGD ID: 12555501
Description: ENCODES a protein that exhibits phosphatidylinositol binding (inferred); phosphatidylinositol-3,5-bisphosphate binding (inferred); INVOLVED IN autophagosome maturation (inferred); postsynaptic modulation of chemical synaptic transmission (inferred); ASSOCIATED WITH autosomal recessive spinocerebellar ataxia 20 (ortholog); cerebellar ataxia (ortholog); epilepsy (ortholog); FOUND IN synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sorting nexin 14, transcript variant X1; sorting nexin 14, transcript variant X2; sorting nexin 14, transcript variant X3; sorting nexin 14, transcript variant X4; sorting nexin 14, transcript variant X5; sorting nexin-14
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494680,684,221 - 80,785,553 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365105,685,017 - 5,786,703 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365105,685,342 - 5,786,672 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Snx14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494680,684,221 - 80,785,553 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365105,685,017 - 5,786,703 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365105,685,342 - 5,786,672 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNX14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38685,505,496 - 85,593,858 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl685,504,776 - 85,594,156 (-)EnsemblGRCh38hg38GRCh38
GRCh37686,215,214 - 86,303,576 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36686,271,933 - 86,360,348 (-)NCBINCBI36Build 36hg18NCBI36
Build 34686,271,935 - 86,360,348NCBI
Celera686,642,396 - 86,730,827 (-)NCBICelera
Cytogenetic Map6q14.3NCBI
HuRef683,439,499 - 83,527,927 (-)NCBIHuRef
CHM1_1686,313,156 - 86,401,522 (-)NCBICHM1_1
T2T-CHM13v2.0686,722,300 - 86,810,666 (-)NCBIT2T-CHM13v2.0
Snx14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39988,258,805 - 88,320,982 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl988,258,800 - 88,321,011 (-)EnsemblGRCm39 Ensembl
GRCm38988,376,755 - 88,438,929 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl988,376,750 - 88,438,958 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl988,376,747 - 88,438,958 (-)EnsemblGRCm38mm10GRCm38
MGSCv37988,271,585 - 88,333,789 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36988,174,668 - 88,236,822 (-)NCBIMGSCv36mm8
Celera985,403,829 - 85,465,439 (-)NCBICelera
Cytogenetic Map9E3.1NCBI
cM Map947.24NCBI
Snx14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8898,053,769 - 98,278,287 (-)NCBIGRCr8
mRatBN7.2889,283,673 - 89,390,597 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl889,298,114 - 89,390,580 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx894,990,651 - 95,060,048 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0893,189,862 - 93,259,261 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0891,049,278 - 91,118,582 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0896,018,943 - 96,088,405 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl896,023,445 - 96,088,405 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0895,518,745 - 95,583,948 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4893,645,995 - 93,711,298 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1893,665,874 - 93,730,750 (-)NCBI
Celera888,891,510 - 88,960,133 (-)NCBICelera
Cytogenetic Map8q31NCBI
Snx14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541112,969,114 - 13,048,836 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541112,967,980 - 13,048,839 (-)NCBIChiLan1.0ChiLan1.0
SNX14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25105,594,163 - 105,694,265 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16103,488,692 - 103,585,762 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0683,389,608 - 83,477,859 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1686,671,608 - 86,759,187 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl686,671,608 - 86,759,118 (-)Ensemblpanpan1.1panPan2
SNX14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11245,526,042 - 45,598,868 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1245,518,721 - 45,599,012 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1245,340,809 - 45,413,610 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01246,295,243 - 46,368,369 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1246,295,255 - 46,368,497 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11245,628,679 - 45,701,471 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01245,557,567 - 45,630,672 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01245,744,588 - 45,817,744 (-)NCBIUU_Cfam_GSD_1.0
SNX14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl154,460,640 - 54,547,216 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1154,460,645 - 54,547,204 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2160,891,438 - 60,977,555 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SNX14
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11310,172,960 - 10,265,852 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1310,173,023 - 10,265,766 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040186,342,607 - 186,451,385 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snx14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247998,670,883 - 8,753,631 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247998,695,488 - 8,754,094 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000023789   ⟹   ENSSTOP00000016711
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365105,685,356 - 5,786,474 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000024906   ⟹   ENSSTOP00000021768
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365105,685,017 - 5,786,474 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000027546   ⟹   ENSSTOP00000014973
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365105,685,356 - 5,786,474 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000030638   ⟹   ENSSTOP00000027045
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365105,685,336 - 5,786,703 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000035072   ⟹   ENSSTOP00000024070
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365105,685,336 - 5,786,703 (+)Ensembl
RefSeq Acc Id: XM_005324741   ⟹   XP_005324798
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494680,684,221 - 80,785,553 (-)NCBI
SpeTri2.0NW_0049365105,685,342 - 5,786,672 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005324742   ⟹   XP_005324799
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494680,684,221 - 80,785,553 (-)NCBI
SpeTri2.0NW_0049365105,685,342 - 5,786,672 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013358352   ⟹   XP_013213806
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494680,684,221 - 80,785,553 (-)NCBI
SpeTri2.0NW_0049365105,685,342 - 5,786,672 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021726037   ⟹   XP_021581712
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494680,684,221 - 80,785,553 (-)NCBI
SpeTri2.0NW_0049365105,685,342 - 5,786,672 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040283049   ⟹   XP_040138983
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494680,684,221 - 80,785,553 (-)NCBI
RefSeq Acc Id: XM_040283050   ⟹   XP_040138984
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494680,684,221 - 80,785,553 (-)NCBI
RefSeq Acc Id: XM_040283051   ⟹   XP_040138985
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494680,684,221 - 80,785,553 (-)NCBI
RefSeq Acc Id: XP_005324798   ⟸   XM_005324741
- Peptide Label: isoform X1
- UniProtKB: A0A287D0M2 (UniProtKB/TrEMBL),   I3NBM1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005324799   ⟸   XM_005324742
- Peptide Label: isoform X3
- UniProtKB: A0A287CRW4 (UniProtKB/TrEMBL),   I3NBM1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013213806   ⟸   XM_013358352
- Peptide Label: isoform X2
- UniProtKB: I3NBM1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021581712   ⟸   XM_021726037
- Peptide Label: isoform X4
- UniProtKB: I3NBM1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040138984   ⟸   XM_040283050
- Peptide Label: isoform X6
- UniProtKB: I3MS78 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040138985   ⟸   XM_040283051
- Peptide Label: isoform X7
- UniProtKB: I3MS78 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040138983   ⟸   XM_040283049
- Peptide Label: isoform X5
- UniProtKB: I3MS78 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000014973   ⟸   ENSSTOT00000027546
RefSeq Acc Id: ENSSTOP00000021768   ⟸   ENSSTOT00000024906
RefSeq Acc Id: ENSSTOP00000024070   ⟸   ENSSTOT00000035072
RefSeq Acc Id: ENSSTOP00000016711   ⟸   ENSSTOT00000023789
RefSeq Acc Id: ENSSTOP00000027045   ⟸   ENSSTOT00000030638
Protein Domains
PX   PXA   RGS


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000024130 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000023789.2 UniProtKB/TrEMBL
  ENSSTOT00000024906.2 UniProtKB/TrEMBL
  ENSSTOT00000027546.2 UniProtKB/TrEMBL
  ENSSTOT00000030638.1 UniProtKB/TrEMBL
  ENSSTOT00000035072.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.167.10 UniProtKB/TrEMBL
  3.30.1520.10 UniProtKB/TrEMBL
InterPro Phox_assoc UniProtKB/TrEMBL
  PX_dom UniProtKB/TrEMBL
  PX_dom_sf UniProtKB/TrEMBL
  RGS UniProtKB/TrEMBL
  RGS_sf UniProtKB/TrEMBL
  RGS_subdomain_2 UniProtKB/TrEMBL
  SNX14_PX UniProtKB/TrEMBL
  SNX14_RGS UniProtKB/TrEMBL
  Sorting_nexin_C UniProtKB/TrEMBL
NCBI Gene Snx14 ENTREZGENE
PANTHER SORTING NEXIN UniProtKB/TrEMBL
  SORTING NEXIN-14 UniProtKB/TrEMBL
Pfam Nexin_C UniProtKB/TrEMBL
  PF00787 UniProtKB/TrEMBL
  PXA UniProtKB/TrEMBL
  RGS UniProtKB/TrEMBL
PROSITE PS50195 UniProtKB/TrEMBL
  PXA UniProtKB/TrEMBL
  RGS UniProtKB/TrEMBL
SMART PXA UniProtKB/TrEMBL
  RGS UniProtKB/TrEMBL
  SM00312 UniProtKB/TrEMBL
Superfamily-SCOP SSF48097 UniProtKB/TrEMBL
  SSF64268 UniProtKB/TrEMBL
UniProt A0A287CRW4 ENTREZGENE, UniProtKB/TrEMBL
  A0A287D0M2 ENTREZGENE, UniProtKB/TrEMBL
  I3MS78 ENTREZGENE, UniProtKB/TrEMBL
  I3MX66_ICTTR UniProtKB/TrEMBL
  I3NBM1 ENTREZGENE, UniProtKB/TrEMBL