Gtf2h2 (general transcription factor II H, polypeptide 2) - Rat Genome Database

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Gene: Gtf2h2 (general transcription factor II H, polypeptide 2) Mus musculus
Analyze
Symbol: Gtf2h2
Name: general transcription factor II H, polypeptide 2
RGD ID: 1321436
MGI Page MGI
Description: Predicted to enable RNA polymerase II general transcription initiation factor activity. Predicted to be involved in nucleotide-excision repair and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within DNA damage response. Predicted to be located in nuclear speck. Predicted to be part of core TFIIH complex portion of holo TFIIH complex and transcription factor TFIID complex. Is expressed in several structures, including alimentary system; early conceptus; genitourinary system; integumental system; and nervous system. Orthologous to several human genes including GTF2H2C (GTF2H2 family member C) and GTF2H2 (general transcription factor IIH subunit 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 44kD; 44kDa; basal transcription factor 2, p44 subunit; basic transcription factor 2 44 kDa subunit; BTF2 p44; BTF2-p44; Btf2p4; Btf2p44; general transcription factor II H, polypeptide 2 (44 kDa subunit); general transcription factor IIH subunit 2; general transcription factor IIH, polypeptide 2 (44 kDa subunit); p4; p44; TFIIH basal transcription factor complex p44 subunit
RGD Orthologs
Human
Rat
Bonobo
Dog
Squirrel
Pig
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913100,596,726 - 100,629,123 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13100,596,726 - 100,629,087 (-)EnsemblGRCm39 Ensembl
GRCm3813100,460,218 - 100,492,609 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13100,460,218 - 100,492,579 (-)EnsemblGRCm38mm10GRCm38
MGSCv3713101,238,532 - 101,262,564 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613101,568,842 - 101,592,824 (-)NCBIMGSCv36mm8
Celera13104,083,848 - 104,107,878 (-)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1353.21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. A history of TFIIH: two decades of molecular biology on a pivotal transcription/repair factor. Egly JM and Coin F, DNA Repair (Amst). 2011 Jul 15;10(7):714-21. doi: 10.1016/j.dnarep.2011.04.021. Epub 2011 May 17.
2. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. The role of XPC: implications in cancer and oxidative DNA damage. Melis JP, etal., Mutat Res. 2011 Nov-Dec;728(3):107-17. doi: 10.1016/j.mrrev.2011.07.001. Epub 2011 Jul 7.
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10480350   PMID:10708519   PMID:10882739   PMID:10922068   PMID:10958627   PMID:10958634   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12904583  
PMID:14610273   PMID:14681479   PMID:14980221   PMID:16141072   PMID:16141073   PMID:17015433   PMID:17967808   PMID:18287559   PMID:18799693   PMID:20059953   PMID:20211142   PMID:20412781  
PMID:21267068   PMID:21677750   PMID:21873635   PMID:22323595   PMID:30973865   PMID:32325033   PMID:32968282   PMID:34161765  


Genomics

Comparative Map Data
Gtf2h2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913100,596,726 - 100,629,123 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13100,596,726 - 100,629,087 (-)EnsemblGRCm39 Ensembl
GRCm3813100,460,218 - 100,492,609 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13100,460,218 - 100,492,579 (-)EnsemblGRCm38mm10GRCm38
MGSCv3713101,238,532 - 101,262,564 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613101,568,842 - 101,592,824 (-)NCBIMGSCv36mm8
Celera13104,083,848 - 104,107,878 (-)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1353.21NCBI
GTF2H2C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38569,560,191 - 69,595,221 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl569,560,191 - 69,595,221 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl571,035,016 - 71,067,689 (-)EnsemblGRCh38hg38GRCh38
GRCh37568,856,018 - 68,891,048 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36568,891,807 - 68,924,486 (+)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map5q13.2NCBI
HuRef565,807,973 - 65,811,082 (+)NCBIHuRef
CHM1_1568,855,883 - 68,888,382 (+)NCBICHM1_1
T2T-CHM13v2.0570,385,969 - 70,420,970 (+)NCBIT2T-CHM13v2.0
Gtf2h2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8233,358,863 - 33,386,726 (-)NCBIGRCr8
mRatBN7.2231,623,752 - 31,652,697 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl231,624,678 - 31,652,592 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx238,759,223 - 38,787,152 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0236,786,878 - 36,814,749 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0231,657,884 - 31,685,708 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0230,494,718 - 30,522,716 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl230,494,825 - 30,522,727 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0249,654,224 - 49,682,092 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4231,284,753 - 31,312,475 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1231,205,139 - 31,232,839 (-)NCBI
Celera227,638,449 - 27,666,266 (-)NCBICelera
Cytogenetic Map2q12NCBI
LOC100987487
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2444,331,682 - 44,364,276 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1542,485,307 - 42,517,901 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0544,412,653 - 44,445,158 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1545,985,077 - 46,028,618 (-)NCBIpanpan1.1PanPan1.1panPan2
LOC478089
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1254,553,871 - 54,579,695 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl254,554,578 - 54,628,670 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha251,520,233 - 51,546,214 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0255,065,783 - 55,092,058 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl255,065,815 - 55,092,042 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1252,129,948 - 52,155,921 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0252,896,845 - 52,922,807 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0253,787,592 - 53,813,579 (+)NCBIUU_Cfam_GSD_1.0
LOC101957203
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213191,136,318 - 191,156,453 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493648072,730 - 92,868 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GTF2H2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11647,658,015 - 47,700,926 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21651,605,442 - 51,644,315 (+)NCBISscrofa10.2Sscrofa10.2susScr3

Variants

.
Variants in Gtf2h2
1295 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:755
Count of miRNA genes:489
Interacting mature miRNAs:561
Transcripts:ENSMUST00000066940, ENSMUST00000066984, ENSMUST00000124644, ENSMUST00000124698, ENSMUST00000134842, ENSMUST00000142182, ENSMUST00000145266, ENSMUST00000147229, ENSMUST00000152049
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55720354112431103Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55720354112431103Mouse
10402414Sgp5_mserum gp70 production 5 (mouse)Not determined1356470456105422186Mouse
1301445Listr2_mlisteriosis resistance 2 (mouse)Not determined1366744601100744746Mouse
1301593Heal8_mwound healing/regeneration 8 (mouse)Not determined1368053999102054119Mouse
14696726Kidrq3_mkidney weight, right QTL 3 (mouse)1368217066102217066Mouse
14747007Mancz11_mmandible centroid size 11 (mouse)1370111284104111284Mouse
4141266Mol3_mmodifier of LPS-response 3 (mouse)Not determined76132600112431103Mouse
12880414V125Dq10_mvitamin D active form serum level QTL 10 (mouse)1378036508112036508Mouse
10043997Bw40_mbody weight QTL 40 (mouse)Not determined1479239045113239162Mouse
10045623Heal18_mwound healing regeneration 18 (mouse)Not determined1379239045113239162Mouse
1558741Ses10_msalmonella enteritidis susceptibility 10 (mouse)Not determined1382739968116740106Mouse
4142465Pbwg17_mpostnatal body weight growth 17 (mouse)Not determined1383876060117876256Mouse
14700691Cisaq1_mcoxsackieviral infection serum ALT QTL 1 (mouse)1386148119120461536Mouse
4140995Fbtq6_mfemoral bone trait QTL 6 (mouse)Not determined1386341617120341758Mouse
4141728Egaq4_mearly growth adjusted QTL 4 (mouse)Not determined87901985112431103Mouse
1300939Hrtfm6_mheart failure modifier 6 (mouse)Not determined1391383692120883175Mouse
1300876Tanidd2_mtally ho associated non-insulin dependednt diabetes mellitus 2 (mouse)Not determined1391965303120883175Mouse
1301142Heal2_mwound healing/regeneration 2 (mouse)Not determined1393875267120883175Mouse
4142338Skmw18_mskeletal muscle weight 18 (mouse)Not determined1394528399120883175Mouse
1558763Gct9_mgranulosa cell tumorigenesis 9 (mouse)Not determined1395036824120883175Mouse
1357468Rplag_mreduced platelet aggregation (mouse)Not determined1395502130120883175Mouse
14746974Manh75_mmandible shape 75 (mouse)1399386647120883175Mouse
4141102Sod1m_msuperoxide dismutase 1, soluble, modifier (mouse)Not determined99739968110699911Mouse

Markers in Region
05.MMHAP18FLB2.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3813100,470,880 - 100,471,030UniSTSGRCm38
MGSCv3713101,240,835 - 101,240,985UniSTSGRCm37
Celera13104,086,152 - 104,086,302UniSTS
Cytogenetic Map13D1UniSTS
cM Map1355.9UniSTS
Whitehead_YAC13 UniSTS
Gtf2h2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map13D1UniSTS
cM Map1353.21UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001360706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_022011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_153794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006517662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004938028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004938029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_873756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_873759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB221674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC158536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF193025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF240514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF240522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH009620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC053382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY277671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY480509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV662169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000066940
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13100,618,037 - 100,629,087 (-)Ensembl
GRCm38.p6 Ensembl13100,481,529 - 100,492,579 (-)Ensembl
RefSeq Acc Id: ENSMUST00000066984   ⟹   ENSMUSP00000065228
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13100,605,088 - 100,629,069 (-)Ensembl
GRCm38.p6 Ensembl13100,468,580 - 100,492,561 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124644
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13100,615,699 - 100,618,157 (-)Ensembl
GRCm38.p6 Ensembl13100,479,191 - 100,481,649 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124698
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13100,613,610 - 100,617,239 (-)Ensembl
GRCm38.p6 Ensembl13100,477,102 - 100,480,731 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134842   ⟹   ENSMUSP00000138748
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13100,605,316 - 100,629,087 (-)Ensembl
GRCm38.p6 Ensembl13100,468,808 - 100,492,579 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142182
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13100,605,316 - 100,628,875 (-)Ensembl
GRCm38.p6 Ensembl13100,468,808 - 100,492,367 (-)Ensembl
RefSeq Acc Id: ENSMUST00000145266   ⟹   ENSMUSP00000138108
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13100,596,726 - 100,628,846 (-)Ensembl
GRCm38.p6 Ensembl13100,460,218 - 100,492,338 (-)Ensembl
RefSeq Acc Id: ENSMUST00000147229
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13100,624,208 - 100,628,882 (-)Ensembl
GRCm38.p6 Ensembl13100,487,700 - 100,492,374 (-)Ensembl
RefSeq Acc Id: ENSMUST00000152049
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13100,625,295 - 100,629,061 (-)Ensembl
GRCm38.p6 Ensembl13100,488,787 - 100,492,553 (-)Ensembl
RefSeq Acc Id: ENSMUST00000231227
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13100,596,758 - 100,600,118 (-)Ensembl
GRCm38.p6 Ensembl13100,460,250 - 100,463,610 (-)Ensembl
RefSeq Acc Id: ENSMUST00000232447
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13100,596,797 - 100,598,665 (-)Ensembl
GRCm38.p6 Ensembl13100,460,289 - 100,462,157 (-)Ensembl
RefSeq Acc Id: ENSMUST00000232450   ⟹   ENSMUSP00000156100
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13100,596,758 - 100,613,703 (-)Ensembl
GRCm38.p6 Ensembl13100,460,250 - 100,477,195 (-)Ensembl
RefSeq Acc Id: NM_001360706   ⟹   NP_001347635
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913100,596,737 - 100,629,117 (-)NCBI
GRCm3813100,460,229 - 100,492,609 (-)NCBI
Sequence:
RefSeq Acc Id: NM_022011   ⟹   NP_071294
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913100,605,085 - 100,629,117 (-)NCBI
GRCm3813100,468,577 - 100,492,609 (-)NCBI
MGSCv3713101,238,532 - 101,262,564 (-)RGD
Celera13104,083,848 - 104,107,878 (-)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_153794
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913100,596,737 - 100,628,902 (-)NCBI
GRCm3813100,460,229 - 100,492,394 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006517662   ⟹   XP_006517725
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913100,596,726 - 100,628,897 (-)NCBI
GRCm3813100,460,218 - 100,492,389 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004938028
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913100,596,726 - 100,629,123 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004938029
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913100,605,192 - 100,628,897 (-)NCBI
Sequence:
RefSeq Acc Id: XR_873756
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913100,596,726 - 100,629,123 (-)NCBI
GRCm3813100,460,218 - 100,492,608 (-)NCBI
Sequence:
RefSeq Acc Id: XR_873759
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913100,596,726 - 100,629,123 (-)NCBI
GRCm3813100,460,218 - 100,492,609 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_071294   ⟸   NM_022011
- Peptide Label: isoform 1
- UniProtKB: Q9JIB4 (UniProtKB/Swiss-Prot),   Q7TPV0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006517725   ⟸   XM_006517662
- Peptide Label: isoform X1
- UniProtKB: Q7TPV0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001347635   ⟸   NM_001360706
- Peptide Label: isoform 2
- UniProtKB: Q7TPV0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000065228   ⟸   ENSMUST00000066984
RefSeq Acc Id: ENSMUSP00000138108   ⟸   ENSMUST00000145266
RefSeq Acc Id: ENSMUSP00000156100   ⟸   ENSMUST00000232450
RefSeq Acc Id: ENSMUSP00000138748   ⟸   ENSMUST00000134842
Protein Domains
C2H2-type   Ssl1-like   VWFA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JIB4-F1-model_v2 AlphaFold Q9JIB4 1-396 view protein structure

Promoters
RGD ID:8681164
Promoter ID:EPDNEW_M18613
Type:multiple initiation site
Name:Gtf2h2_2
Description:Mus musculus general transcription factor II H, polypeptide 2, transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18614  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3813100,492,369 - 100,492,429EPDNEW
RGD ID:8681168
Promoter ID:EPDNEW_M18614
Type:multiple initiation site
Name:Gtf2h2_1
Description:Mus musculus general transcription factor II H, polypeptide 2, transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18613  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3813100,492,590 - 100,492,650EPDNEW
RGD ID:6824002
Promoter ID:MM_KWN:15084
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4
Transcripts:ENSMUST00000109351,   NM_022011,   OTTMUST00000056140,   OTTMUST00000056143,   OTTMUST00000056144,   UC007RQT.1,   UC007RQU.1,   UC007RQX.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3613101,262,306 - 101,263,517 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1345669 AgrOrtholog
Ensembl Genes ENSMUSG00000021639 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000066984 ENTREZGENE
  ENSMUST00000066984.14 UniProtKB/Swiss-Prot
  ENSMUST00000134842.8 UniProtKB/TrEMBL
  ENSMUST00000145266 ENTREZGENE
  ENSMUST00000145266.8 UniProtKB/TrEMBL
  ENSMUST00000232450.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.410 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro C1-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ssl1-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TFIIH_C1-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TFIIH_SSL1/p44 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWF_A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:23894 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1345669 ENTREZGENE
NCBI Gene 23894 ENTREZGENE
PANTHER GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam C1_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ssl1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gtf2h2 PhenoGen
PIRSF TFIIH_SSL1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE VWFA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
SMART C1_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57889 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A338P6R6_MOUSE UniProtKB/TrEMBL
  Q7TPV0 ENTREZGENE, UniProtKB/TrEMBL
  Q8C5I2_MOUSE UniProtKB/TrEMBL
  Q91YN8_MOUSE UniProtKB/TrEMBL
  Q9JIB4 ENTREZGENE
  S4R2R0_MOUSE UniProtKB/TrEMBL
  TF2H2_MOUSE UniProtKB/Swiss-Prot