Rangap1 (RAN GTPase activating protein 1) - Rat Genome Database

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Gene: Rangap1 (RAN GTPase activating protein 1) Mus musculus
Analyze
Symbol: Rangap1
Name: RAN GTPase activating protein 1
RGD ID: 1321255
MGI Page MGI
Description: Predicted to enable GTPase activator activity; RNA binding activity; and enzyme binding activity. Involved in nuclear export. Located in perinuclear region of cytoplasm. Is expressed in several structures, including brain; genitourinary system; liver; lung; and primitive streak. Orthologous to human RANGAP1 (Ran GTPase activating protein 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C79654; Fug1; mKIAA1835; ran GTPase-activating protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm16574   Gm7162  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391581,588,449 - 81,614,120 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1581,588,449 - 81,629,731 (-)EnsemblGRCm39 Ensembl
GRCm381581,704,248 - 81,730,798 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1581,704,248 - 81,745,530 (-)EnsemblGRCm38mm10GRCm38
MGSCv371581,534,678 - 81,560,349 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361581,531,508 - 81,557,156 (-)NCBIMGSCv36mm8
Celera1583,823,354 - 83,848,746 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1538.21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
1,2-dimethylhydrazine  (EXP)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (EXP)
14-Deoxy-11,12-didehydroandrographolide  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
2-amino-14,16-dimethyloctadecan-3-ol  (ISO)
2-hydroxypropanoic acid  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3-chloropropane-1,2-diol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (ISO)
aflatoxin B1  (EXP,ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
amphetamine  (ISO)
azoxystrobin  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
buspirone  (ISO)
caffeine  (ISO)
carbon nanotube  (EXP)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (EXP)
cobalt dichloride  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
diuron  (ISO)
dopamine  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (ISO)
Enterolactone  (ISO)
ethanol  (EXP)
fenoldopam  (ISO)
flutamide  (ISO)
folic acid  (EXP)
FR900359  (ISO)
genistein  (ISO)
gentamycin  (ISO)
glafenine  (ISO)
glyphosate  (ISO)
imidacloprid  (ISO)
isoprenaline  (EXP)
ivermectin  (ISO)
lead(0)  (ISO)
lithocholic acid  (ISO)
methimazole  (ISO)
naphthalene  (EXP)
nefazodone  (ISO)
nickel atom  (ISO)
nocodazole  (ISO)
oridonin  (ISO)
ozone  (EXP)
paracetamol  (ISO)
parathion  (EXP)
phenobarbital  (EXP)
piperonyl butoxide  (ISO)
pirinixic acid  (EXP)
propiconazole  (EXP)
rac-lactic acid  (ISO)
resveratrol  (EXP)
retinyl acetate  (EXP)
rotenone  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenite  (EXP,ISO)
sulfadimethoxine  (ISO)
sunitinib  (ISO)
tamoxifen  (EXP)
tetrachloromethane  (EXP,ISO)
thiabendazole  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP,ISO)
tremolite asbestos  (EXP)
trichloroethene  (ISO)
trimellitic anhydride  (EXP)
trovafloxacin  (ISO)
valproic acid  (EXP,ISO)
vitamin E  (ISO)
zinc atom  (ISO)
zinc dichloride  (ISO)
zinc(0)  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Molecular cloning of a novel mitogen-inducible nuclear protein with a Ran GTPase-activating domain that affects cell cycle progression. Hattori M, etal., Mol Cell Biol 1995 Jan;15(1):552-60.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
4. Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Ko MS, etal., Hum Mol Genet 1998 Nov;7(12):1967-78.
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. Postage for the messenger: designating routes for nuclear mRNA export. Natalizio BJ and Wente SR, Trends Cell Biol. 2013 Aug;23(8):365-73. doi: 10.1016/j.tcb.2013.03.006. Epub 2013 Apr 11.
7. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. The Ran GTPase-activating protein (RanGAP1) is critically involved in smooth muscle cell differentiation, proliferation and migration following vascular injury: implications for neointima formation and restenosis. Vorpahl M, etal., PLoS One. 2014 Jul 2;9(7):e101519. doi: 10.1371/journal.pone.0101519. eCollection 2014.
12. Localized regulation of axonal RanGTPase controls retrograde injury signaling in peripheral nerve. Yudin D, etal., Neuron. 2008 Jul 31;59(2):241-52. doi: 10.1016/j.neuron.2008.05.029.
Additional References at PubMed
PMID:1317320   PMID:7891706   PMID:8314081   PMID:8851043   PMID:9456312   PMID:9603515   PMID:10349636   PMID:10491385   PMID:10591541   PMID:10922068   PMID:11042159   PMID:11076861  
PMID:11792325   PMID:11853669   PMID:12477932   PMID:12520002   PMID:12821332   PMID:12904583   PMID:14610273   PMID:14621295   PMID:15033168   PMID:15094046   PMID:15569683   PMID:15782199  
PMID:15923632   PMID:16141072   PMID:16141073   PMID:16602821   PMID:18305100   PMID:18799693   PMID:18974875   PMID:19033381   PMID:19285941   PMID:21267068   PMID:21677750   PMID:21873635  
PMID:22155005   PMID:23665500   PMID:23892456   PMID:24302573   PMID:24457600   PMID:24753249   PMID:25299344   PMID:26304119   PMID:26321253   PMID:27160050   PMID:27717094   PMID:28671696  
PMID:29127148   PMID:30457570   PMID:32325033   PMID:32554809   PMID:34110283   PMID:36417873   PMID:36696903  


Genomics

Comparative Map Data
Rangap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391581,588,449 - 81,614,120 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1581,588,449 - 81,629,731 (-)EnsemblGRCm39 Ensembl
GRCm381581,704,248 - 81,730,798 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1581,704,248 - 81,745,530 (-)EnsemblGRCm38mm10GRCm38
MGSCv371581,534,678 - 81,560,349 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361581,531,508 - 81,557,156 (-)NCBIMGSCv36mm8
Celera1583,823,354 - 83,848,746 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1538.21NCBI
RANGAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382241,244,779 - 41,302,369 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2241,244,779 - 41,286,187 (-)EnsemblGRCh38hg38GRCh38
GRCh372241,640,783 - 41,698,373 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362239,971,561 - 40,012,162 (-)NCBINCBI36Build 36hg18NCBI36
Build 342239,966,115 - 40,006,716NCBI
Celera2225,447,987 - 25,488,613 (-)NCBICelera
Cytogenetic Map22q13.2NCBI
HuRef2224,605,244 - 24,646,120 (-)NCBIHuRef
CHM1_12241,600,469 - 41,641,957 (-)NCBICHM1_1
T2T-CHM13v2.02241,719,708 - 41,781,201 (-)NCBIT2T-CHM13v2.0
Rangap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87115,104,820 - 115,130,564 (-)NCBIGRCr8
mRatBN7.27113,224,695 - 113,250,441 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7113,224,703 - 113,250,438 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7114,987,321 - 115,013,059 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07117,210,820 - 117,236,558 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07117,180,248 - 117,205,987 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07122,939,266 - 122,967,178 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7122,940,376 - 122,967,178 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07122,913,894 - 122,942,464 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47120,056,065 - 120,080,018 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17120,090,297 - 120,114,248 (-)NCBI
Celera7109,543,716 - 109,569,417 (-)NCBICelera
Cytogenetic Map7q34NCBI
Rangap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541326,867,812 - 26,890,284 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541326,869,487 - 26,894,192 (-)NCBIChiLan1.0ChiLan1.0
RANGAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22351,078,320 - 51,135,017 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12253,778,242 - 53,834,871 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02222,142,644 - 22,199,268 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12240,233,357 - 40,286,677 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2240,233,357 - 40,272,671 (-)Ensemblpanpan1.1panPan2
RANGAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11023,953,877 - 23,985,622 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1023,953,912 - 24,003,162 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1023,886,012 - 23,917,770 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01024,698,293 - 24,730,051 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1024,698,297 - 24,747,502 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11024,414,746 - 24,446,498 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01024,735,632 - 24,767,361 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01024,910,123 - 24,941,882 (+)NCBIUU_Cfam_GSD_1.0
Rangap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049457,585,629 - 7,615,805 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936492595,938 - 626,213 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936492595,905 - 626,219 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RANGAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl57,211,010 - 7,241,003 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.157,210,974 - 7,240,965 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.254,545,694 - 4,555,008 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RANGAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11923,789,839 - 23,829,653 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1923,788,241 - 23,829,631 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045101,593,587 - 101,634,522 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rangap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247527,246,193 - 7,277,701 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247527,246,161 - 7,277,702 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rangap1
532 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1129
Count of miRNA genes:309
Interacting mature miRNAs:350
Transcripts:ENSMUST00000052374, ENSMUST00000170134, ENSMUST00000171115
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
27226729Tibmd2_mtibia midshaft diameter 2, 5 week (mouse)153800024486684201Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154216339695497881Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154836339698397881Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
1301429Pcir3_mperiosteal circumference 3 (mouse)Not determined154846536282465496Mouse
4142198Hbtq_mhabituation QTL (mouse)Not determined155116070885160833Mouse
10045637Heal27_mwound healing/regeneration 29 (mouse)Not determined155141836185418511Mouse
10412067Pain2_mpain 2 (mouse)Not determined155164533985645626Mouse
1302080Szs13_mseizure susceptibility 13 (mouse)Not determined155168583285694449Mouse
1301708Cocrb14_mcocaine related behavior 14 (mouse)Not determined155180651585806651Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155356339689584203Mouse
13504731Cath5_mcarotid atherosclerosis 5 (mouse)155478912988789129Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
27095936Ulnl4_mulna length 4, 5 week (mouse)155676339687684201Mouse
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155711700591117153Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155711700591117153Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156158420095584200Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156316390397163995Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156481182698811946Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156533657899341028Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156552537699525499Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567270698101270847Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570349271104073951Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570349271104073951Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572382669104073951Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573430144104073951Mouse
15092079Igly6_mIgG glycosylation 6, GP6 (mouse)157410054082674156Mouse
1301472Pain1_mpain 1 (mouse)Not determined157532084690813185Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577527592104073951Mouse
15092080Igly7_mIgG glycosylation 7, GP10 (mouse)157779491982674156Mouse
4142060W3q6_mweight 3 weeks QTL 6 (mouse)Not determined78601103102901704Mouse
1357894Epfpq3_mepididymal fat percentage QTL 3 (mouse)Not determined1578601103102901704Mouse
14928306Manh79_mmandible shape 79 (mouse)1578847557104073951Mouse
12880411V125Dq11_mvitamin D active form serum level QTL 11 (mouse)1578897881104073951Mouse
10402490Dipa5_mdrug induced psychomotor activation 5 (mouse)Not determined1579163411104073951Mouse
4141897Imrfq2_mimmune response to Factor IX QTL 2 (mouse)Not determined79908940104073951Mouse
1301284Cosz3_mcocaine seizure 3 (mouse)Not determined1580313634104073951Mouse
4141902Cia37_mcollagen induced arthritis 37 (mouse)Not determined1580884933104073951Mouse
1300974Pgia9_mproteoglycan induced arthritis 9 (mouse)Not determined1580884933104073951Mouse
25394540Skmw82_mskeletal muscle weight 82, soleus (mouse)158143443681671139Mouse

Markers in Region
RH126910  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381581,704,384 - 81,704,583UniSTSGRCm38
MGSCv371581,534,814 - 81,535,013UniSTSGRCm37
Celera1583,823,490 - 83,823,689UniSTS
Cytogenetic Map15E1UniSTS
cM Map1543.3UniSTS
Whitehead/MRC_RH15714.51UniSTS
U08110  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381581,704,312 - 81,704,430UniSTSGRCm38
MGSCv371581,534,742 - 81,534,860UniSTSGRCm37
Celera1583,823,418 - 83,823,536UniSTS
Cytogenetic Map15E1UniSTS
cM Map1543.3UniSTS
Whitehead/MRC_RH15719.1UniSTS
UniSTS:225124  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381581,704,923 - 81,705,087UniSTSGRCm38
MGSCv371581,535,353 - 81,535,517UniSTSGRCm37
Celera1583,824,029 - 83,824,193UniSTS
Cytogenetic Map15E1UniSTS
cM Map1543.3UniSTS
Rangap1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15E1UniSTS
cM Map1543.3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001146174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001358622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_152441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_383994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC102262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC158970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK005370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC014855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC052862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC066213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC071200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY287991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY438103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U08110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U08111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U20857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000052374   ⟹   ENSMUSP00000057771
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1581,588,454 - 81,614,204 (-)Ensembl
GRCm38.p6 Ensembl1581,704,253 - 81,730,003 (-)Ensembl
RefSeq Acc Id: ENSMUST00000170134   ⟹   ENSMUSP00000126849
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1581,588,449 - 81,614,102 (-)Ensembl
GRCm38.p6 Ensembl1581,704,248 - 81,729,901 (-)Ensembl
RefSeq Acc Id: ENSMUST00000171115   ⟹   ENSMUSP00000130046
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1581,588,812 - 81,614,063 (-)Ensembl
GRCm38.p6 Ensembl1581,704,611 - 81,729,862 (-)Ensembl
RefSeq Acc Id: ENSMUST00000229705
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1581,593,457 - 81,594,661 (-)Ensembl
GRCm38.p6 Ensembl1581,709,256 - 81,710,460 (-)Ensembl
RefSeq Acc Id: ENSMUST00000230287
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1581,601,991 - 81,614,081 (-)Ensembl
GRCm38.p6 Ensembl1581,717,790 - 81,729,880 (-)Ensembl
RefSeq Acc Id: ENSMUST00000230302   ⟹   ENSMUSP00000155198
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1581,597,022 - 81,613,600 (-)Ensembl
GRCm38.p6 Ensembl1581,712,821 - 81,729,399 (-)Ensembl
RefSeq Acc Id: ENSMUST00000230726   ⟹   ENSMUSP00000155851
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1581,602,991 - 81,629,731 (-)Ensembl
GRCm38.p6 Ensembl1581,718,790 - 81,745,530 (-)Ensembl
RefSeq Acc Id: NM_001146174   ⟹   NP_001139646
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391581,588,449 - 81,614,120 (-)NCBI
GRCm381581,704,248 - 81,729,919 (-)NCBI
MGSCv371581,534,678 - 81,560,349 (-)RGD
Celera1583,823,354 - 83,848,746 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001358622   ⟹   NP_001345551
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391581,588,449 - 81,614,120 (-)NCBI
GRCm381581,704,248 - 81,729,919 (-)NCBI
Sequence:
RefSeq Acc Id: NM_011241   ⟹   NP_035371
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391581,588,449 - 81,614,120 (-)NCBI
GRCm381581,704,248 - 81,729,919 (-)NCBI
MGSCv371581,534,678 - 81,560,349 (-)RGD
Celera1583,823,354 - 83,848,746 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_152441
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391581,588,449 - 81,614,120 (-)NCBI
GRCm381581,704,248 - 81,729,919 (-)NCBI
Sequence:
RefSeq Acc Id: XR_383994
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391581,588,454 - 81,610,483 (-)NCBI
GRCm381581,704,253 - 81,726,282 (-)NCBI
Sequence:
RefSeq Acc Id: NP_035371   ⟸   NM_011241
- Peptide Label: isoform 1
- UniProtKB: Q60801 (UniProtKB/Swiss-Prot),   Q6NZB5 (UniProtKB/Swiss-Prot),   P46061 (UniProtKB/Swiss-Prot),   Q91YS2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001139646   ⟸   NM_001146174
- Peptide Label: isoform 1
- UniProtKB: Q60801 (UniProtKB/Swiss-Prot),   Q6NZB5 (UniProtKB/Swiss-Prot),   P46061 (UniProtKB/Swiss-Prot),   Q91YS2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001345551   ⟸   NM_001358622
- Peptide Label: isoform 2
- UniProtKB: Q91YS2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000057771   ⟸   ENSMUST00000052374
RefSeq Acc Id: ENSMUSP00000126849   ⟸   ENSMUST00000170134
RefSeq Acc Id: ENSMUSP00000155851   ⟸   ENSMUST00000230726
RefSeq Acc Id: ENSMUSP00000155198   ⟸   ENSMUST00000230302
RefSeq Acc Id: ENSMUSP00000130046   ⟸   ENSMUST00000171115
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P46061-F1-model_v2 AlphaFold P46061 1-589 view protein structure

Promoters
RGD ID:6826213
Promoter ID:MM_KWN:19164
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   Spleen
Transcripts:NM_001146174,   NM_011241,   UC007WWZ.1,   UC007WXA.1,   UC007WXC.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361581,560,071 - 81,560,782 (-)MPROMDB
RGD ID:8684450
Promoter ID:EPDNEW_M20255
Type:initiation region
Name:Rangap1_2
Description:Mus musculus RAN GTPase activating protein 1 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20256  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381581,726,252 - 81,726,312EPDNEW
RGD ID:8684452
Promoter ID:EPDNEW_M20256
Type:initiation region
Name:Rangap1_1
Description:Mus musculus RAN GTPase activating protein 1 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20255  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381581,729,880 - 81,729,940EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:103071 AgrOrtholog
Ensembl Genes ENSMUSG00000022391 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000052374 ENTREZGENE
  ENSMUST00000052374.13 UniProtKB/Swiss-Prot
  ENSMUST00000170134 ENTREZGENE
  ENSMUST00000170134.9 UniProtKB/Swiss-Prot
  ENSMUST00000171115.3 UniProtKB/Swiss-Prot
  ENSMUST00000230302.2 UniProtKB/TrEMBL
  ENSMUST00000230726.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.200 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Leu-rich_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ran_GTPase_activating_1_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RanGap UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RanGAP1_C_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:19387 UniProtKB/Swiss-Prot
MGD MGI:103071 ENTREZGENE
NCBI Gene 19387 ENTREZGENE
PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 UniProtKB/Swiss-Prot
  RAN GTPASE-ACTIVATING PROTEIN 1 UniProtKB/Swiss-Prot
  RAN GTPASE-ACTIVATING PROTEIN 1 UniProtKB/TrEMBL
  RAN GTPASE-ACTIVATING PROTEIN 1 UniProtKB/TrEMBL
Pfam LRR_6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RanGAP1_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rangap1 PhenoGen
SMART LRR_RI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP RNI-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF69099 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A2R8VHK9_MOUSE UniProtKB/TrEMBL
  A0A2R8W753_MOUSE UniProtKB/TrEMBL
  P46061 ENTREZGENE
  Q3ULJ9_MOUSE UniProtKB/TrEMBL
  Q3UZD8_MOUSE UniProtKB/TrEMBL
  Q60801 ENTREZGENE
  Q6NZB5 ENTREZGENE
  Q6ZPH4_MOUSE UniProtKB/TrEMBL
  Q7TMW1_MOUSE UniProtKB/TrEMBL
  Q8C2E3_MOUSE UniProtKB/TrEMBL
  Q91YS2 ENTREZGENE, UniProtKB/TrEMBL
  Q9CW20_MOUSE UniProtKB/TrEMBL
  RAGP1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q60801 UniProtKB/Swiss-Prot
  Q6NZB5 UniProtKB/Swiss-Prot