Pspc1 (paraspeckle protein 1) - Rat Genome Database

Name: Pspc1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Pspc1 (paraspeckle protein 1) Mus musculus

Analyze

Symbol:

Pspc1

Name:

paraspeckle protein 1

RGD ID:

1320844

MGI Page

MGI

Description:

Enables RNA binding activity. Involved in negative regulation of DNA-templated transcription and regulation of circadian rhythm. Located in paraspeckles. Is expressed in several structures, including central nervous system; genitourinary system; and sensory organ. Orthologous to human PSPC1 (paraspeckle component 1).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

5730470C09Rik; AI327109; AI449052; mPSP1; P; paraspeckle component 1; PSP1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PSPC1 (paraspeckle component 1)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Pspc1 (paraspeckle component 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pspc1 (paraspeckle component 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PSPC1 (paraspeckle component 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PSPC1 (paraspeckle component 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pspc1 (paraspeckle component 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PSPC1 (paraspeckle component 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PSPC1 (paraspeckle component 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pspc1 (paraspeckle component 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Pspc1 (paraspeckle component 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	PSPC1 (paraspeckle component 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pspc1 (paraspeckle component 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	nono-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	nonA	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	nonA-l	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	56,959,898 - 57,015,775 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	56,958,167 - 57,015,773 (-)	Ensembl		GRCm39 Ensembl
GRCm38	14	56,722,441 - 56,778,318 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	56,720,710 - 56,778,316 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	57,341,286 - 57,397,153 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	55,676,559 - 55,732,426 (-)	NCBI		MGSCv36	mm8
Celera	14	54,520,204 - 54,576,103 (-)	NCBI		Celera
Cytogenetic Map	14	C3	NCBI
cM Map	14	28.4	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (ISO)

1,1-dichloroethene (EXP)

1,2-dichloroethane (EXP)

14-Deoxy-11,12-didehydroandrographolide (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (EXP,ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3',4,4',5-Pentachlorobiphenyl (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

2,6-dinitrotoluene (ISO)

3,4-methylenedioxymethamphetamine (EXP)

3-chloropropane-1,2-diol (ISO)

4,4'-diaminodiphenylmethane (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (EXP)

aconitine (ISO)

aflatoxin B1 (ISO)

Aroclor 1254 (EXP)

arsenous acid (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

butanal (ISO)

cadmium dichloride (ISO)

carbon nanotube (EXP)

chloroacetaldehyde (ISO)

chlorpyrifos (EXP)

cidofovir anhydrous (ISO)

cisplatin (ISO)

clodronic acid (ISO)

clofibrate (EXP)

copper(II) sulfate (ISO)

crocidolite asbestos (EXP,ISO)

cyclosporin A (ISO)

daidzein (ISO)

daidzein 7-O-beta-D-glucoside (ISO)

decabromodiphenyl ether (ISO)

deoxynivalenol (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (EXP)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (EXP)

ethyl methanesulfonate (ISO)

folic acid (EXP)

formaldehyde (ISO)

genistein (ISO)

genistein 7-O-beta-D-glucoside (ISO)

gentamycin (ISO)

glycitein (ISO)

glycitin (ISO)

ifosfamide (ISO)

indole-3-methanol (ISO)

ivermectin (ISO)

methapyrilene (ISO)

methyl methanesulfonate (ISO)

N-methyl-4-phenylpyridinium (ISO)

oxaliplatin (ISO)

ozone (ISO)

paracetamol (EXP)

pentanal (ISO)

perfluorohexanesulfonic acid (EXP)

perfluorooctanoic acid (ISO)

progesterone (ISO)

resveratrol (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

silver atom (EXP)

silver(0) (EXP)

sodium arsenite (ISO)

sodium dichromate (ISO)

sodium fluoride (EXP)

temozolomide (ISO)

tetrachloromethane (EXP,ISO)

topotecan (ISO)

trichloroethene (ISO)

trimellitic anhydride (EXP)

valproic acid (ISO)

vinclozolin (ISO)

vincristine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

activation of innate immune response (ISO)

immune system process (IEA)

innate immune response (IEA)

negative regulation of DNA-templated transcription (IDA)

non-membrane-bounded organelle assembly (ISO)

regulation of circadian rhythm (IMP)

regulation of DNA-templated transcription (IBA)

rhythmic process (IEA)

Cellular Component

cytoplasm (IEA)

fibrillar center (ISO)

nucleoplasm (IDA,ISO)

nucleus (IBA)

paraspeckles (IDA,ISO)

Molecular Function

nucleic acid binding (IEA)

protein binding (IPI)

RNA binding (IBA,IDA,ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal spleen morphology (IEA)

decreased exploration in new environment (IEA)

enlarged spleen (IEA)

increased startle reflex (IEA)

male infertility (IEA)

small spleen (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Functional annotation of a full-length mouse cDNA collection.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	MGDs mouse GO annotations	MGD data from the GO Consortium
3.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11591653	PMID:12477932	PMID:12520002	PMID:12904583	PMID:14610273	PMID:15140795	PMID:15782199
PMID:16033648	PMID:16141072	PMID:16141073	PMID:16641145	PMID:18287559	PMID:18799693	PMID:19217333	PMID:19334288	PMID:19720872	PMID:21444682	PMID:21677750	PMID:21873635
PMID:22083510	PMID:22840402	PMID:22966205	PMID:23308148	PMID:24457600	PMID:25100870	PMID:25694451	PMID:26206133	PMID:27160897	PMID:28117896	PMID:28192372	PMID:30333137
PMID:30550785	PMID:30550788	PMID:31146259	PMID:31299635	PMID:32325033	PMID:34133714	PMID:34490876	PMID:37839992	PMID:38355793

Genomics

Comparative Map Data

Pspc1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	56,959,898 - 57,015,775 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	56,958,167 - 57,015,773 (-)	Ensembl		GRCm39 Ensembl
GRCm38	14	56,722,441 - 56,778,318 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	56,720,710 - 56,778,316 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	57,341,286 - 57,397,153 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	55,676,559 - 55,732,426 (-)	NCBI		MGSCv36	mm8
Celera	14	54,520,204 - 54,576,103 (-)	NCBI		Celera
Cytogenetic Map	14	C3	NCBI
cM Map	14	28.4	NCBI

PSPC1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	19,671,205 - 19,782,945 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	19,674,752 - 19,783,019 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	13	20,248,892 - 20,357,085 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	19,146,896 - 19,255,083 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	13	19,147,527 - 19,255,082	NCBI
Celera	13	1,310,734 - 1,418,914 (-)	NCBI		Celera
Cytogenetic Map	13	q12.11	NCBI
HuRef	13	1,053,841 - 1,162,259 (-)	NCBI		HuRef
CHM1_1	13	20,216,795 - 20,325,586 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	13	18,867,270 - 18,979,203 (-)	NCBI		T2T-CHM13v2.0

Pspc1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	34,941,445 - 35,027,460 (-)	NCBI		GRCr8
mRatBN7.2	15	30,828,617 - 30,911,315 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	30,828,626 - 30,911,202 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	32,843,198 - 32,902,554 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	33,993,854 - 34,053,213 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	32,251,952 - 32,311,317 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	36,946,914 - 37,030,273 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	36,950,257 - 37,030,281 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	40,799,244 - 40,883,016 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	35,718,357 - 35,779,139 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	35,734,056 - 35,794,839 (-)	NCBI
Celera	15	30,565,581 - 30,624,899 (-)	NCBI		Celera
Cytogenetic Map	15	p12	NCBI

Pspc1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955497	575,340 - 642,809 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955497	574,678 - 641,885 (-)	NCBI	ChiLan1.0	ChiLan1.0

PSPC1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	19,304,282 - 19,410,858 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	10,416,794 - 10,522,261 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	1,001,131 - 1,106,627 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	19,319,242 - 19,424,074 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	19,347,276 - 19,428,997 (-)	Ensembl	panpan1.1		panPan2

PSPC1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	18,287,827 - 18,361,801 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	18,287,899 - 18,359,553 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	18,317,277 - 18,391,326 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	18,425,772 - 18,499,922 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	18,425,958 - 18,497,672 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	18,291,628 - 18,365,647 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	18,303,745 - 18,377,811 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	18,360,192 - 18,434,592 (+)	NCBI		UU_Cfam_GSD_1.0

Pspc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	120,329,144 - 120,422,113 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936720	1,876,475 - 1,967,662 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936720	1,876,726 - 1,941,705 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PSPC1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	482,564 - 572,090 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	11	477,010 - 572,090 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	86,908,816 - 86,971,424 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PSPC1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	1,160,227 - 1,232,390 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666057	43,304,564 - 43,413,173 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pspc1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624776	17,906,063 - 17,978,098 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624776	17,906,700 - 17,978,885 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Pspc1
1304 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	701
Count of miRNA genes:	423
Interacting mature miRNAs:	502
Transcripts:	ENSMUST00000022507, ENSMUST00000163924, ENSMUST00000168524, ENSMUST00000168575
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357589	Kdnw2_m	kidney weight 2 (mouse)			Not determined		14	20887473	121269804	Mouse
1357527	Epfpq1_m	epididymal fat percentage QTL 1 (mouse)			Not determined		14	21062450	71885801	Mouse
4142485	Modor2_m	modifier of ocular retardation 2 (mouse)			Not determined		14	24926248	58179769	Mouse
13506929	Recrq10_m	recombination rate in male meiosis QTL 10 (mouse)					14	27921957	61137449	Mouse
10043886	Cia49_m	collagen induced arthritis QTL 49 (mouse)			Not determined		14	29996994	63997133	Mouse
27226774	Tibl15_m	tibia length 15, 10 week (mouse)					14	30321957	87937436	Mouse
1300909	Ath13_m	atherosclerosis 13 (mouse)			Not determined		14	30335250	64335381	Mouse
1300998	Cia17_m	collagen induced arthritis 17 (mouse)			Not determined		14	30335250	64335381	Mouse
27226737	Metcl12_m	metatarsal-calcaneal length 12, 10 week (mouse)					14	33221957	59437449	Mouse
1300625	Cosz2_m	cocaine seizure 2 (mouse)			Not determined		14	35045797	68785736	Mouse
10043887	Cia50_m	collagen induced arthritis QTL 50 (mouse)			Not determined		14	37430185	71430320	Mouse
4142419	Tgq26_m	triglyceride QTL 26 (mouse)			Not determined			40337319	74337319	Mouse
1301777	Bglq15_m	body growth late QTL 15 (mouse)			Not determined		14	42962416	76962593	Mouse
1301424	Skull21_m	skull morphology 21 (mouse)			Not determined		14	42962416	76962593	Mouse
1300805	Mors3_m	modifier of obesity related sterility 3 (mouse)			Not determined		14	43037270	77037418	Mouse
1301091	Bbaa21_m	B.burgdorferi-associated arthritis 21 (mouse)			Not determined		14	43065847	77066045	Mouse
4141400	Nilac8_m	nicotine induced locomotor activity 8 (mouse)			Not determined		14	43065847	77066045	Mouse
4141484	Hcbip1_m	hexachlorobenzene induced porphyria 1 (mouse)			Not determined			47335250	59962593	Mouse
1300605	El5_m	epilepsy 5 (mouse)			Not determined		14	49455425	83455556	Mouse
4142364	Pbwg18_m	postnatal body weight growth 18 (mouse)			Not determined		14	52281984	86282125	Mouse
1301489	Lbm10_m	lean body mass 10 (mouse)			Not determined		14	53761296	87761529	Mouse
12880432	Fgf23lq3_m	FGF23 serum level QTL 3 (mouse)					14	53937440	87937440	Mouse
10043889	Cia52_m	collagen induced arthritis QTL 52 (mouse)			Not determined		14	56082381	90082509	Mouse
1301562	Hwq1_m	heart weight quantitative locus 1 (mouse)			Not determined		14	56546745	90546941	Mouse

Markers in Region

BE334192

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	14	56,777,454 - 56,777,583	UniSTS	GRCm38
MGSCv37	14	57,396,291 - 57,396,420	UniSTS	GRCm37
Celera	14	54,575,241 - 54,575,370	UniSTS
Cytogenetic Map	14	C3	UniSTS
Whitehead/MRC_RH	14	434.75	UniSTS

AI449052

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	14	56,722,470 - 56,722,694	UniSTS	GRCm38
MGSCv37	14	57,341,307 - 57,341,531	UniSTS	GRCm37
Celera	14	54,520,225 - 54,520,449	UniSTS
Cytogenetic Map	14	C3	UniSTS
Whitehead/MRC_RH	14	428.66	UniSTS

Pspc1

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	14	C3	UniSTS
cM Map	14		UniSTS

AI327109

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	14	56,778,560 - 56,778,658	UniSTS	GRCm38
MGSCv37	14	57,397,397 - 57,397,495	UniSTS	GRCm37
Celera	14	54,576,347 - 54,576,445	UniSTS
Cytogenetic Map	14	C3	UniSTS
Whitehead/MRC_RH	14	641.32	UniSTS

btcn1695

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	14	56,771,732 - 56,771,886	UniSTS	GRCm38
MGSCv37	14	57,390,569 - 57,390,723	UniSTS	GRCm37
Celera	14	54,569,519 - 54,569,673	UniSTS
Cytogenetic Map	14	C3	UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001360420	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_025682	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC154361	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC154731	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK011272	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK017689	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK041362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK082951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK150823	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK160722	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK217789	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC026772	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB244768	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466535	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CN528008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000022507 ⟹ ENSMUSP00000022507

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	56,958,167 - 57,015,773 (-)	Ensembl
GRCm38.p6 Ensembl	14	56,720,710 - 56,778,316 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000163924 ⟹ ENSMUSP00000133038

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	56,961,443 - 57,015,773 (-)	Ensembl
GRCm38.p6 Ensembl	14	56,723,986 - 56,778,316 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000168524

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	56,985,992 - 56,999,324 (-)	Ensembl
GRCm38.p6 Ensembl	14	56,748,535 - 56,761,867 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000168575 ⟹ ENSMUSP00000125780

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	56,986,315 - 57,015,384 (-)	Ensembl
GRCm38.p6 Ensembl	14	56,748,858 - 56,777,927 (-)	Ensembl

RefSeq Acc Id:

NM_001360420 ⟹ NP_001347349

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	14	56,959,898 - 57,015,775 (-)	NCBI
GRCm38	14	56,722,441 - 56,778,318 (-)	NCBI

Sequence:

show sequence

GCGCCATTTTGAGCGTTCGGCCACCGCGGGCGTGATTGCGGGGAGGCTGGGCTTCCCTCCGTTA
CCTGGCTTTCCTTGCTTCGTTTCCATAGATACATGTGGAGACGTGTGTACCTTGACGTCTAGGC
CTCATCCAGCATCCCAAGCGAACTTGCTAAGATGATGTTAAGAGGAAACCTGAAGCAAGTACGT
ATTGAGAAAAACCCGGCTCGTCTTCGCGCCCTGGAGTCGGCGGCCGGAGAGAGCGAACCGGTGG
CCGCGGCGGCCATGGCGCTGACGCTGGCCGGCGAGCAGGCGCCGCCACCCGCACCTTCCGAGGA
GCACCCGGACGAGGAATTGGGCTTCACCATCGACATCAAGAGTTTCCTCAAGCCGGGCGAGAAG
ACGTACACGCAGCGCTGCCGCCTCTTCGTGGGTAACCTGCCCACAGACATCACGGAGGAGGACT
TCAAGCGCCTCTTTGAGCGCTACGGAGAGCCCAGCGAGGTCTTCATCAACCGCGACCGAGGCTT
CGGCTTCATCCGCCTGAACACCTCGTCCAGTCATTGTAGAACCCATGGAGCAGTTTGATGATGA
AGATGGTTTACCAGAGAAGCTAATGCAGAAAACTCAACAGTACCATAAGGAAAGAGAACAGCCA
CCACGGTTTGCTCAACCTGGGACATTTGAATTTGAATATGCGTCTCGATGGAAGGCTCTTGATG
AAATGGAAAAGCAGCAGCGGGAACAAGTTGATAGAAACATCAGAGAAGCCAAAGAGAAACTGGA
GGCAGAGATGGAAGCAGCTAGACATGAACACCAGTTAATGCTAATGAGGCAAGATCTAATGAGA
CGTCAAGAAGAACTCAGACGTTTGGAAGAACTCAGAAATCAAGAACTGCAGAAACGAAAGCAAA
TACAACTGAGACACGAAGAAGAGCATCGTCGTCGTGAAGAAGAAATGATCCGTCACAGAGAGCA
GGAGGAGCTGAGGCGACAGCAAGAGGGCGGCTTTAAACCAAACTATATGGAAAATAGAGAACAG
GAAATGAGAATGGGTGATATGGGTCCCCGTGGAGCAATAAACATGGGAGATGCATTTAGCCCAG
CACCTGCTGGTACCCAAGGTCCTCCTCCAATGATGGGTATGAATATGAACAACAGAGGAACTAT
ACCTGGCCCACCAATGGGTCCTGGTCCTGCCATGGGACCAGAAGGAGCTGCAAATATGGGAACT
CCAATGATACCAGATAATGGCGCAGTGCACAATGATAGGTTTCCCCAAGGACCTCCATCCCAGA
TGGGTTCACCCATGGGAAATAGAACAGGTTCTGAAACTCCCCAGGCACCGATGAGTGGTGTAGG
GCCTGTAAGTGGTGGTCCTGGCGGCTTTGGTAGAGGGAGTCAAGGGGGCAATTTTGAAGGCCCT
AATAAGCGTCGGAGATATTAAATAATGGTTCATTCCTGACTGTTTAGAAAAACATTCAATGGTA
TGTCTTTACACCATGTCTGTTACTAGGGAGAAATGGTTTTACTGTTAATGTATGTAGACTAAAG
TTTTTCTTTTGTAAAACTTGAGTTTTTTTTGTATTTTCTTTATTCATAAGCTTTGTAGATTAGC
TTGGTGAAAAAGATGCCCATCATTGTGAATGTTGAAAAGTGTTTGTGACCTTAGCTAACGATAG
CTATGTGGCATTATTATTAAGTCTGTGTAGTTACTTAATCTCAATAAAGAAATGATTTTGCCTA
ATTTAAAATGTTCTTAGTGGTATTCCCTCATGACCTTACAAAACTTGCTATGGTTGCTTTAGCT
AATCCTACCTATTTAAACGTGAAGATGACTTTGTTTTTCTGTTTGTTCCTGTAGCCCTTAAGTC
AGACTGTTAGTGAAAGCTGATGTCAATAAGGGACACATACTGTAGTATACTAGTGGGTGGGAGG
CATGGGGGTTAAGATTGTATAAACCATAGATCCTGTGTAAGTTAGAGTTGTTGCTTACATTTCA
TATAGAGTCTCACTATTCATATATTCTGAGAAAAGTTATTGAGGCTATCTTTGTTCTGTGCTGA
TTTTTCCAAATAAACCTTTTGAATCTTAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_025682 ⟹ NP_079958

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	14	56,959,898 - 57,015,775 (-)	NCBI
GRCm38	14	56,722,441 - 56,778,318 (-)	NCBI
MGSCv37	14	57,341,286 - 57,397,153 (-)	RGD
Celera	14	54,520,204 - 54,576,103 (-)	RGD
cM Map	14		ENTREZGENE

Sequence:

show sequence

GCGCCATTTTGAGCGTTCGGCCACCGCGGGCGTGATTGCGGGGAGGCTGGGCTTCCCTCCGTTA
CCTGGCTTTCCTTGCTTCGTTTCCATAGATACATGTGGAGACGTGTGTACCTTGACGTCTAGGC
CTCATCCAGCATCCCAAGCGAACTTGCTAAGATGATGTTAAGAGGAAACCTGAAGCAAGTACGT
ATTGAGAAAAACCCGGCTCGTCTTCGCGCCCTGGAGTCGGCGGCCGGAGAGAGCGAACCGGTGG
CCGCGGCGGCCATGGCGCTGACGCTGGCCGGCGAGCAGGCGCCGCCACCCGCACCTTCCGAGGA
GCACCCGGACGAGGAATTGGGCTTCACCATCGACATCAAGAGTTTCCTCAAGCCGGGCGAGAAG
ACGTACACGCAGCGCTGCCGCCTCTTCGTGGGTAACCTGCCCACAGACATCACGGAGGAGGACT
TCAAGCGCCTCTTTGAGCGCTACGGAGAGCCCAGCGAGGTCTTCATCAACCGCGACCGAGGCTT
CGGCTTCATCCGCCTGGAATCGAGAACACTGGCTGAAATTGCAAAAGCAGAGTTGGATGGCACC
ATACTGAAGAGCAGACCTCTCCGAATTCGCTTTGCTACACATGGAGCAGCCCTAACGGTCAAGA
ACCTTTCTCCGGTTGTTTCCAATGAGCTTCTAGAGCAAGCATTTTCCCAGTTTGGCCCAGTAGA
GAAAGCTGTTGTGGTTGTGGATGATCGTGGTAGAGCCACAGGAAAAGGTTTTGTAGAATTTGCA
GCGAAACCTCCTGCACGAAAGGCTCTGGAGAGATGTGGTGATGGGGCGTTCTTGCTAACAACAA
CACCTCGTCCAGTCATTGTAGAACCCATGGAGCAGTTTGATGATGAAGATGGTTTACCAGAGAA
GCTAATGCAGAAAACTCAACAGTACCATAAGGAAAGAGAACAGCCACCACGGTTTGCTCAACCT
GGGACATTTGAATTTGAATATGCGTCTCGATGGAAGGCTCTTGATGAAATGGAAAAGCAGCAGC
GGGAACAAGTTGATAGAAACATCAGAGAAGCCAAAGAGAAACTGGAGGCAGAGATGGAAGCAGC
TAGACATGAACACCAGTTAATGCTAATGAGGCAAGATCTAATGAGACGTCAAGAAGAACTCAGA
CGTTTGGAAGAACTCAGAAATCAAGAACTGCAGAAACGAAAGCAAATACAACTGAGACACGAAG
AAGAGCATCGTCGTCGTGAAGAAGAAATGATCCGTCACAGAGAGCAGGAGGAGCTGAGGCGACA
GCAAGAGGGCGGCTTTAAACCAAACTATATGGAAAATAGAGAACAGGAAATGAGAATGGGTGAT
ATGGGTCCCCGTGGAGCAATAAACATGGGAGATGCATTTAGCCCAGCACCTGCTGGTACCCAAG
GTCCTCCTCCAATGATGGGTATGAATATGAACAACAGAGGAACTATACCTGGCCCACCAATGGG
TCCTGGTCCTGCCATGGGACCAGAAGGAGCTGCAAATATGGGAACTCCAATGATACCAGATAAT
GGCGCAGTGCACAATGATAGGTTTCCCCAAGGACCTCCATCCCAGATGGGTTCACCCATGGGAA
ATAGAACAGGTTCTGAAACTCCCCAGGCACCGATGAGTGGTGTAGGGCCTGTAAGTGGTGGTCC
TGGCGGCTTTGGTAGAGGGAGTCAAGGGGGCAATTTTGAAGGCCCTAATAAGCGTCGGAGATAT
TAAATAATGGTTCATTCCTGACTGTTTAGAAAAACATTCAATGGTATGTCTTTACACCATGTCT
GTTACTAGGGAGAAATGGTTTTACTGTTAATGTATGTAGACTAAAGTTTTTCTTTTGTAAAACT
TGAGTTTTTTTTGTATTTTCTTTATTCATAAGCTTTGTAGATTAGCTTGGTGAAAAAGATGCCC
ATCATTGTGAATGTTGAAAAGTGTTTGTGACCTTAGCTAACGATAGCTATGTGGCATTATTATT
AAGTCTGTGTAGTTACTTAATCTCAATAAAGAAATGATTTTGCCTAATTTAAAATGTTCTTAGT
GGTATTCCCTCATGACCTTACAAAACTTGCTATGGTTGCTTTAGCTAATCCTACCTATTTAAAC
GTGAAGATGACTTTGTTTTTCTGTTTGTTCCTGTAGCCCTTAAGTCAGACTGTTAGTGAAAGCT
GATGTCAATAAGGGACACATACTGTAGTATACTAGTGGGTGGGAGGCATGGGGGTTAAGATTGT
ATAAACCATAGATCCTGTGTAAGTTAGAGTTGTTGCTTACATTTCATATAGAGTCTCACTATTC
ATATATTCTGAGAAAAGTTATTGAGGCTATCTTTGTTCTGTGCTGATTTTTCCAAATAAACCTT
TTGAATCTTAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001347349	(Get FASTA)	NCBI Sequence Viewer
	NP_079958	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH26772	(Get FASTA)	NCBI Sequence Viewer
	BAB27509	(Get FASTA)	NCBI Sequence Viewer
	BAB30876	(Get FASTA)	NCBI Sequence Viewer
	BAE29885	(Get FASTA)	NCBI Sequence Viewer
	BAE35969	(Get FASTA)	NCBI Sequence Viewer
	EDL36190	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000022507
	ENSMUSP00000022507.6
	ENSMUSP00000125780.2
	ENSMUSP00000133038.2
GenBank Protein	Q8R326	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_079958 ⟸ NM_025682
- Peptide Label:	isoform 1
- UniProtKB:	Q9CYH1 (UniProtKB/Swiss-Prot), Q3TUK2 (UniProtKB/Swiss-Prot), Q9D0M8 (UniProtKB/Swiss-Prot), Q8R326 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MMLRGNLKQVRIEKNPARLRALESAAGESEPVAAAAMALTLAGEQAPPPAPSEEHPDEELGFTI DIKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTL AEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRG RATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLMQKTQQYHK EREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEAEMEAARHEHQLMLMR QDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRHREQEELRRQQEGGFKPNYM ENREQEMRMGDMGPRGAINMGDAFSPAPAGTQGPPPMMGMNMNNRGTIPGPPMGPGPAMGPEGA ANMGTPMIPDNGAVHNDRFPQGPPSQMGSPMGNRTGSETPQAPMSGVGPVSGGPGGFGRGSQGG NFEGPNKRRRY hide sequence

RefSeq Acc Id:	NP_001347349 ⟸ NM_001360420
- Peptide Label:	isoform 2

RefSeq Acc Id:

ENSMUSP00000133038 ⟸ ENSMUST00000163924

RefSeq Acc Id:

ENSMUSP00000022507 ⟸ ENSMUST00000022507

RefSeq Acc Id:

ENSMUSP00000125780 ⟸ ENSMUST00000168575

Protein Domains

NOPS RRM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8R326-F1-model_v2	AlphaFold	Q8R326	1-523	view protein structure

Promoters

RGD ID:

8682528

Promoter ID:

EPDNEW_M19294

Type:

multiple initiation site

Name:

Pspc1_1

Description:

Mus musculus paraspeckle protein 1 , transcript variant 1, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	14	56,778,316 - 56,778,376	EPDNEW

RGD ID:

6825310

Promoter ID:

MM_KWN:17039

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day2, 3T3L1_Day4, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, Liver, Lung, MEF_B6, Spleen

Transcripts:

NM_025682, UC007UCK.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	14	57,396,849 - 57,397,349 (-)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1913895	AgrOrtholog
Ensembl Genes	ENSMUSG00000021938	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000022507	ENTREZGENE
	ENSMUST00000022507.13	UniProtKB/Swiss-Prot
	ENSMUST00000163924.2	UniProtKB/Swiss-Prot
	ENSMUST00000168575.2	UniProtKB/TrEMBL
Gene3D-CATH	3.30.70.330	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	6.10.250.1170	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Alpha-catenin/vinculin-like	UniProtKB/TrEMBL
InterPro	Alpha-catenin/vinculin-like_sf	UniProtKB/TrEMBL
	NOPS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Nucleotide-bd_a/b_plait_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PSP1_RRM1	UniProtKB/Swiss-Prot
	RBD_domain_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RRM_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Vinculin	UniProtKB/TrEMBL
	Vinculin/catenin	UniProtKB/TrEMBL
KEGG Report	mmu:66645	UniProtKB/Swiss-Prot
MGD	MGI:1913895	ENTREZGENE
NCBI Gene	66645	ENTREZGENE
PANTHER	PARASPECKLE COMPONENT 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RNA RECOGNITION MOTIF-CONTAINING	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	VINCULIN	UniProtKB/TrEMBL
	VINCULIN	UniProtKB/TrEMBL
Pfam	NOPS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RRM_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Vinculin	UniProtKB/TrEMBL
PhenoGen	Pspc1	PhenoGen
PROSITE	RRM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	RRM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF54928	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Vinculin/catenin	UniProtKB/TrEMBL
UniProt	F7D909_MOUSE	UniProtKB/TrEMBL
	PSPC1_MOUSE	UniProtKB/Swiss-Prot
	Q3TEB0_MOUSE	UniProtKB/TrEMBL
	Q3TUK2	ENTREZGENE
	Q8R326	ENTREZGENE
	Q9CYH1	ENTREZGENE
	Q9D0M8	ENTREZGENE
UniProt Secondary	Q3TUK2	UniProtKB/Swiss-Prot
	Q9CYH1	UniProtKB/Swiss-Prot
	Q9D0M8	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Mammalian Phenotype