Pacsin3 (protein kinase C and casein kinase substrate in neurons 3) - Rat Genome Database

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Gene: Pacsin3 (protein kinase C and casein kinase substrate in neurons 3) Mus musculus
Analyze
Symbol: Pacsin3
Name: protein kinase C and casein kinase substrate in neurons 3
RGD ID: 1316457
MGI Page MGI
Description: Enables calcium channel inhibitor activity; cytoskeletal protein binding activity; and lipid binding activity. Involved in negative regulation of calcium ion transport and plasma membrane tubulation. Acts upstream of or within negative regulation of endocytosis. Located in cytoplasm. Is expressed in central nervous system and retina. Orthologous to human PACSIN3 (protein kinase C and casein kinase substrate in neurons 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4921507A02Rik; 6330413E15Rik; AW413130; protein kinase C and casein kinase II substrate protein 3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39291,086,215 - 91,095,025 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl291,086,299 - 91,095,024 (+)EnsemblGRCm39 Ensembl
GRCm38291,255,875 - 91,264,680 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl291,255,954 - 91,264,679 (+)EnsemblGRCm38mm10GRCm38
MGSCv37291,096,970 - 91,104,836 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36291,053,440 - 91,065,517 (+)NCBIMGSCv36mm8
Celera292,642,292 - 92,650,140 (+)NCBICelera
Cytogenetic Map2E1NCBI
cM Map250.61NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IDA)
cytosol  (ISO)
endosome  (IBA)
membrane  (IEA)
plasma membrane  (IBA,ISO)
trans-Golgi network  (IDA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10531379   PMID:11042159   PMID:11076861   PMID:11082044   PMID:11179684   PMID:12477932   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:16537572   PMID:16602821   PMID:16627472   PMID:16880268   PMID:17114649   PMID:17320047   PMID:18174177   PMID:18456257   PMID:19521500   PMID:21267068   PMID:21610094  
PMID:21677750   PMID:21873635   PMID:22297988   PMID:22573331   PMID:23918399   PMID:24500282   PMID:29202928   PMID:30973865   PMID:31040226   PMID:32325033   PMID:35449600  


Genomics

Comparative Map Data
Pacsin3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39291,086,215 - 91,095,025 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl291,086,299 - 91,095,024 (+)EnsemblGRCm39 Ensembl
GRCm38291,255,875 - 91,264,680 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl291,255,954 - 91,264,679 (+)EnsemblGRCm38mm10GRCm38
MGSCv37291,096,970 - 91,104,836 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36291,053,440 - 91,065,517 (+)NCBIMGSCv36mm8
Celera292,642,292 - 92,650,140 (+)NCBICelera
Cytogenetic Map2E1NCBI
cM Map250.61NCBI
PACSIN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381147,177,522 - 47,186,434 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1147,177,522 - 47,186,443 (-)EnsemblGRCh38hg38GRCh38
GRCh371147,199,073 - 47,207,985 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361147,155,654 - 47,164,534 (-)NCBINCBI36Build 36hg18NCBI36
Build 341147,155,660 - 47,164,534NCBI
Celera1147,338,301 - 47,347,238 (-)NCBICelera
Cytogenetic Map11p11.2NCBI
HuRef1146,898,049 - 46,906,986 (-)NCBIHuRef
CHM1_11147,197,807 - 47,206,741 (-)NCBICHM1_1
T2T-CHM13v2.01147,334,276 - 47,343,188 (-)NCBIT2T-CHM13v2.0
Pacsin3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8397,683,054 - 97,691,619 (+)NCBIGRCr8
mRatBN7.2377,227,187 - 77,235,820 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl377,222,710 - 77,235,811 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx380,705,464 - 80,714,024 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0389,304,479 - 89,313,039 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0387,155,613 - 87,164,184 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0380,072,425 - 80,081,058 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl380,072,489 - 80,081,047 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0386,780,541 - 86,789,813 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4375,611,040 - 75,619,605 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1375,511,254 - 75,515,587 (+)NCBI
Celera376,433,959 - 76,442,528 (+)NCBICelera
Cytogenetic Map3q24NCBI
Pacsin3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955422989,605 - 995,140 (+)NCBIChiLan1.0ChiLan1.0
PACSIN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2949,377,358 - 49,386,313 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11149,397,164 - 49,406,067 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01147,122,620 - 47,131,559 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11147,676,432 - 47,685,362 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1147,676,432 - 47,684,485 (-)Ensemblpanpan1.1panPan2
PACSIN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11842,378,692 - 42,399,225 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1842,389,951 - 42,398,924 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1841,107,149 - 41,127,919 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01843,032,479 - 43,053,469 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1843,044,881 - 43,053,469 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11842,519,000 - 42,539,778 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01842,073,947 - 42,094,718 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01842,803,847 - 42,824,628 (+)NCBIUU_Cfam_GSD_1.0
Pacsin3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494719,877,198 - 19,883,975 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365621,989,662 - 1,995,580 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365621,988,839 - 1,995,597 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PACSIN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl215,381,707 - 15,389,887 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1215,380,297 - 15,389,893 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2216,604,963 - 16,613,448 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PACSIN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1118,125,207 - 18,135,866 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl118,130,727 - 18,135,454 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038115,428,210 - 115,437,090 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pacsin3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247671,505,633 - 1,512,610 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247671,505,617 - 1,512,606 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pacsin3
267 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3073
Count of miRNA genes:704
Interacting mature miRNAs:914
Transcripts:ENSMUST00000028694, ENSMUST00000059566, ENSMUST00000111349, ENSMUST00000124658, ENSMUST00000126754, ENSMUST00000128684, ENSMUST00000131711, ENSMUST00000134699, ENSMUST00000138470, ENSMUST00000141313, ENSMUST00000143883, ENSMUST00000144394, ENSMUST00000154959, ENSMUST00000156919, ENSMUST00000168916
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240885493114910165Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
4141406Alpq2_malcohol preference QTL 2 (mouse)Not determined25752411791524288Mouse
12738429Lfibq18_mliver fibrosis QTL 18 (mouse)25791999191919991Mouse
1357577Trmq3_mT cell ratio modifier QTL 3 (mouse)Not determined260520612119355518Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
10044002Hdl7_mHDL level 7 (mouse)Not determined26300595497006113Mouse
10053681Lith24_mlithogenic gene 24 (mouse)Not determined26300595497006113Mouse
1301405Etohr_methanol response acute (mouse)Not determined26300595497006113Mouse
1301703Bomd3_mbone mineral density 3 (mouse)Not determined26300595497006113Mouse
1300662Etohila_methanol induced locomotor activity (mouse)Not determined26300595497006113Mouse
1301048Actre2_mactivity response to ethanol 2 (mouse)Not determined26300595497006113Mouse
1301873Hsl1_mhyperoxia susceptibility locus 1 (mouse)Not determined26357015497570301Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
1301660Iba1_minduction of brown adipocytes 1 (mouse)Not determined267647887101648142Mouse
13463482Mchq17_mmean corpuscular hemoglobin QTL 17 (mouse)267647887101648142Mouse
1301882Etohc2_methanol consumption 2 (mouse)Not determined268724269102724407Mouse
1301948Elsgp3_melevated serum gp70 3 (mouse)Not determined268724269102724407Mouse
4142088Parms1_mpatched associated RMS 1 (mouse)Not determined74524117114123532Mouse
11528549Sluc31_msusceptibility to lung cancer 31 (mouse)274524117129213005Mouse
1301374Cplaq7_mcircadian period of locomotor activity 7 (mouse)Not determined276421483110421651Mouse
4141657Mohg1_mmodifier of hg 1 (mouse)Not determined276678758103095823Mouse
10043894Bw22_mbody weight QTL 22 (mouse)Not determined280895334114895334Mouse
15092054Egrme5_mearly growth rate, maternal effect 5 (mouse)282190187118004745Mouse
1558901Skmw8_mskeletal muscle weight 8 (mouse)Not determined284008488118008593Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284013198148522175Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284013198148667470Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
11049565Lmr28g_mleishmaniasis resistance 28g (mouse)286095716120095823Mouse
11038697Ltpr2d_mLeishmania tropica response 2d (mouse)286095716120095823Mouse
11038698Ltpr2c_mLeishmania tropica response 2c (mouse)286095716120095823Mouse
1300852Lmr14_mleishmaniasis resistance 14 (mouse)Not determined286095716120095823Mouse
1301834Bits1_mbitterness sensitivity 1 (mouse)Not determined287440643121440778Mouse
11532731Sluc31a_msusceptibility to lung cancer 31a (mouse)288015003122015170Mouse
4142223Femwf4_mfemur work to failure 4 (mouse)Not determined88143423122143570Mouse
1301098Cd8mts3_mCD8 memory T cell subset 3 (mouse)Not determined291089974125090104Mouse

Markers in Region
RH128846  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38291,264,417 - 91,264,589UniSTSGRCm38
MGSCv37291,104,574 - 91,104,746UniSTSGRCm37
Celera292,649,878 - 92,650,050UniSTS
Cytogenetic Map2E1UniSTS
AW413130  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38291,264,347 - 91,264,433UniSTSGRCm38
MGSCv37291,104,504 - 91,104,590UniSTSGRCm37
Celera292,649,808 - 92,649,894UniSTS
Cytogenetic Map2E1UniSTS
Whitehead/MRC_RH21271.29UniSTS
Pacsin3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2E1UniSTS
cM Map2 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001289677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001289678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_028733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_030880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006500424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006500425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006500427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006500428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF149824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF242531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL691450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL732478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV333674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW048905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY078995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY250979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000028694   ⟹   ENSMUSP00000028694
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,087,158 - 91,095,023 (+)Ensembl
GRCm38.p6 Ensembl291,256,813 - 91,264,678 (+)Ensembl
RefSeq Acc Id: ENSMUST00000059566   ⟹   ENSMUSP00000054391
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,086,507 - 91,095,024 (+)Ensembl
GRCm38.p6 Ensembl291,256,162 - 91,264,679 (+)Ensembl
RefSeq Acc Id: ENSMUST00000111349   ⟹   ENSMUSP00000106981
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,087,674 - 91,095,024 (+)Ensembl
GRCm38.p6 Ensembl291,257,329 - 91,264,679 (+)Ensembl
RefSeq Acc Id: ENSMUST00000124658
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,089,551 - 91,090,574 (+)Ensembl
GRCm38.p6 Ensembl291,259,206 - 91,260,229 (+)Ensembl
RefSeq Acc Id: ENSMUST00000126754
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,091,150 - 91,092,014 (+)Ensembl
GRCm38.p6 Ensembl291,260,805 - 91,261,669 (+)Ensembl
RefSeq Acc Id: ENSMUST00000128684   ⟹   ENSMUSP00000118915
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,093,451 - 91,094,704 (+)Ensembl
GRCm38.p6 Ensembl291,263,106 - 91,264,359 (+)Ensembl
RefSeq Acc Id: ENSMUST00000131711   ⟹   ENSMUSP00000117214
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,087,680 - 91,091,646 (+)Ensembl
GRCm38.p6 Ensembl291,257,335 - 91,261,301 (+)Ensembl
RefSeq Acc Id: ENSMUST00000134699   ⟹   ENSMUSP00000115046
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,086,299 - 91,091,914 (+)Ensembl
GRCm38.p6 Ensembl291,255,954 - 91,261,569 (+)Ensembl
RefSeq Acc Id: ENSMUST00000138470   ⟹   ENSMUSP00000117230
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,090,174 - 91,091,943 (+)Ensembl
GRCm38.p6 Ensembl291,259,829 - 91,261,598 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141313
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,093,258 - 91,093,878 (+)Ensembl
GRCm38.p6 Ensembl291,262,913 - 91,263,533 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143883
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,086,460 - 91,087,473 (+)Ensembl
GRCm38.p6 Ensembl291,256,115 - 91,257,128 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144394   ⟹   ENSMUSP00000121297
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,087,158 - 91,091,591 (+)Ensembl
GRCm38.p6 Ensembl291,256,813 - 91,261,246 (+)Ensembl
RefSeq Acc Id: ENSMUST00000154959   ⟹   ENSMUSP00000122769
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,086,489 - 91,090,886 (+)Ensembl
GRCm38.p6 Ensembl291,256,144 - 91,260,541 (+)Ensembl
RefSeq Acc Id: ENSMUST00000156919   ⟹   ENSMUSP00000122779
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,087,183 - 91,091,680 (+)Ensembl
GRCm38.p6 Ensembl291,256,838 - 91,261,335 (+)Ensembl
RefSeq Acc Id: ENSMUST00000168916   ⟹   ENSMUSP00000129175
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl291,087,158 - 91,095,024 (+)Ensembl
GRCm38.p6 Ensembl291,256,813 - 91,264,679 (+)Ensembl
RefSeq Acc Id: NM_001289677   ⟹   NP_001276606
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,086,510 - 91,095,025 (+)NCBI
GRCm38291,256,165 - 91,264,680 (+)NCBI
Celera292,641,644 - 92,650,141 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001289678   ⟹   NP_001276607
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,087,158 - 91,095,025 (+)NCBI
GRCm38291,256,813 - 91,264,680 (+)NCBI
Celera292,641,644 - 92,650,141 (+)NCBI
Sequence:
RefSeq Acc Id: NM_028733   ⟹   NP_083009
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,087,674 - 91,095,025 (+)NCBI
GRCm38291,257,329 - 91,264,680 (+)NCBI
MGSCv37291,096,970 - 91,104,836 (+)RGD
Celera292,641,644 - 92,650,141 (+)NCBI
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_030880   ⟹   NP_112019
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,087,158 - 91,095,025 (+)NCBI
GRCm38291,256,813 - 91,264,680 (+)NCBI
MGSCv37291,096,970 - 91,104,836 (+)RGD
Celera292,641,644 - 92,650,141 (+)NCBI
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006500424   ⟹   XP_006500487
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,087,345 - 91,095,024 (+)NCBI
GRCm38291,257,004 - 91,264,679 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006500425   ⟹   XP_006500488
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,086,443 - 91,095,024 (+)NCBI
GRCm38291,256,098 - 91,264,679 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006500427   ⟹   XP_006500490
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,086,290 - 91,095,024 (+)NCBI
GRCm38291,256,108 - 91,264,679 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006500428   ⟹   XP_006500491
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,087,140 - 91,095,024 (+)NCBI
GRCm38291,256,588 - 91,264,679 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252256   ⟹   XP_030108116
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39291,086,215 - 91,095,024 (+)NCBI
GRCm38291,255,875 - 91,264,679 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_112019   ⟸   NM_030880
- UniProtKB: Q9EQP9 (UniProtKB/Swiss-Prot),   Q99JB8 (UniProtKB/Swiss-Prot),   Q543N7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_083009   ⟸   NM_028733
- UniProtKB: Q9EQP9 (UniProtKB/Swiss-Prot),   Q99JB8 (UniProtKB/Swiss-Prot),   Q543N7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006500488   ⟸   XM_006500425
- Peptide Label: isoform X1
- UniProtKB: Q9EQP9 (UniProtKB/Swiss-Prot),   Q99JB8 (UniProtKB/Swiss-Prot),   Q543N7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006500490   ⟸   XM_006500427
- Peptide Label: isoform X1
- UniProtKB: Q9EQP9 (UniProtKB/Swiss-Prot),   Q99JB8 (UniProtKB/Swiss-Prot),   Q543N7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006500491   ⟸   XM_006500428
- Peptide Label: isoform X1
- UniProtKB: Q9EQP9 (UniProtKB/Swiss-Prot),   Q99JB8 (UniProtKB/Swiss-Prot),   Q543N7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006500487   ⟸   XM_006500424
- Peptide Label: isoform X1
- UniProtKB: Q9EQP9 (UniProtKB/Swiss-Prot),   Q99JB8 (UniProtKB/Swiss-Prot),   Q543N7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001276606   ⟸   NM_001289677
- UniProtKB: Q9EQP9 (UniProtKB/Swiss-Prot),   Q99JB8 (UniProtKB/Swiss-Prot),   Q543N7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001276607   ⟸   NM_001289678
- UniProtKB: Q9EQP9 (UniProtKB/Swiss-Prot),   Q99JB8 (UniProtKB/Swiss-Prot),   Q543N7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030108116   ⟸   XM_030252256
- Peptide Label: isoform X1
- UniProtKB: Q99JB8 (UniProtKB/Swiss-Prot),   Q9EQP9 (UniProtKB/Swiss-Prot),   Q543N7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000106981   ⟸   ENSMUST00000111349
RefSeq Acc Id: ENSMUSP00000121297   ⟸   ENSMUST00000144394
RefSeq Acc Id: ENSMUSP00000117230   ⟸   ENSMUST00000138470
RefSeq Acc Id: ENSMUSP00000054391   ⟸   ENSMUST00000059566
RefSeq Acc Id: ENSMUSP00000028694   ⟸   ENSMUST00000028694
RefSeq Acc Id: ENSMUSP00000117214   ⟸   ENSMUST00000131711
RefSeq Acc Id: ENSMUSP00000129175   ⟸   ENSMUST00000168916
RefSeq Acc Id: ENSMUSP00000122769   ⟸   ENSMUST00000154959
RefSeq Acc Id: ENSMUSP00000115046   ⟸   ENSMUST00000134699
RefSeq Acc Id: ENSMUSP00000118915   ⟸   ENSMUST00000128684
RefSeq Acc Id: ENSMUSP00000122779   ⟸   ENSMUST00000156919
Protein Domains
F-BAR   SH3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q99JB8-F1-model_v2 AlphaFold Q99JB8 1-424 view protein structure

Promoters
RGD ID:6831997
Promoter ID:MM_KWN:30466
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000059566,   NM_028733,   NM_030880,   OTTMUST00000034223,   OTTMUST00000034224,   OTTMUST00000034225,   OTTMUST00000034226,   OTTMUST00000034228,   OTTMUST00000034229,   OTTMUST00000057824,   UC008KVM.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36291,096,556 - 91,097,662 (+)MPROMDB
RGD ID:6831998
Promoter ID:MM_KWN:30468
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000034230
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36291,101,176 - 91,101,676 (+)MPROMDB
RGD ID:6831996
Promoter ID:MM_KWN:30469
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:OTTMUST00000034231,   OTTMUST00000034232
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36291,102,091 - 91,103,092 (+)MPROMDB
RGD ID:6877906
Promoter ID:EPDNEW_M2404
Type:initiation region
Name:Pacsin3_4
Description:Mus musculus protein kinase C and casein kinase substrate inneurons 3 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2405  EPDNEW_M2406  EPDNEW_M2407  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38291,256,100 - 91,256,160EPDNEW
RGD ID:6877908
Promoter ID:EPDNEW_M2405
Type:initiation region
Name:Pacsin3_1
Description:Mus musculus protein kinase C and casein kinase substrate inneurons 3 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2404  EPDNEW_M2406  EPDNEW_M2407  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38291,256,835 - 91,256,895EPDNEW
RGD ID:6877910
Promoter ID:EPDNEW_M2406
Type:multiple initiation site
Name:Pacsin3_2
Description:Mus musculus protein kinase C and casein kinase substrate inneurons 3 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2404  EPDNEW_M2405  EPDNEW_M2407  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38291,257,364 - 91,257,424EPDNEW
RGD ID:6877912
Promoter ID:EPDNEW_M2407
Type:initiation region
Name:Pacsin3_3
Description:Mus musculus protein kinase C and casein kinase substrate inneurons 3 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2404  EPDNEW_M2405  EPDNEW_M2406  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38291,259,835 - 91,259,895EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1891410 AgrOrtholog
Ensembl Genes ENSMUSG00000027257 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000028694 ENTREZGENE
  ENSMUST00000028694.12 UniProtKB/Swiss-Prot
  ENSMUST00000059566 ENTREZGENE
  ENSMUST00000059566.11 UniProtKB/Swiss-Prot
  ENSMUST00000111349 ENTREZGENE
  ENSMUST00000111349.9 UniProtKB/Swiss-Prot
  ENSMUST00000128684.2 UniProtKB/TrEMBL
  ENSMUST00000131711.8 UniProtKB/TrEMBL
  ENSMUST00000134699.8 UniProtKB/TrEMBL
  ENSMUST00000138470.2 UniProtKB/TrEMBL
  ENSMUST00000144394.8 UniProtKB/TrEMBL
  ENSMUST00000154959.8 UniProtKB/TrEMBL
  ENSMUST00000156919.8 UniProtKB/TrEMBL
  ENSMUST00000168916 ENTREZGENE
  ENSMUST00000168916.8 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.1270.60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 Domains UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AH/BAR_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  F_BAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FCH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:80708 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1891410 ENTREZGENE
NCBI Gene 80708 ENTREZGENE
PANTHER PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR23065:SF18 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pacsin3 PhenoGen
PRINTS SH3DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE F_BAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART FCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF103657 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50044 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A6PWR1_MOUSE UniProtKB/TrEMBL
  B1AW91_MOUSE UniProtKB/TrEMBL
  B1AW92_MOUSE UniProtKB/TrEMBL
  B1AW93_MOUSE UniProtKB/TrEMBL
  B1AW94_MOUSE UniProtKB/TrEMBL
  B1AW95_MOUSE UniProtKB/TrEMBL
  F6W8Y8_MOUSE UniProtKB/TrEMBL
  PACN3_MOUSE UniProtKB/Swiss-Prot
  Q543N7 ENTREZGENE, UniProtKB/TrEMBL
  Q99JB8 ENTREZGENE
  Q9EQP9 ENTREZGENE
UniProt Secondary Q9EQP9 UniProtKB/Swiss-Prot