Gtpbp1 (GTP binding protein 1) - Rat Genome Database

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Gene: Gtpbp1 (GTP binding protein 1) Mus musculus
Analyze
Symbol: Gtpbp1
Name: GTP binding protein 1
RGD ID: 1315560
MGI Page MGI
Description: Predicted to enable GTPase activity and nucleic acid binding activity. Predicted to be involved in GTP metabolic process; positive regulation of mRNA catabolic process; and translation. Predicted to be located in cytosol. Predicted to be part of cytoplasmic exosome (RNase complex). Is expressed in cerebral cortex subventricular zone and cerebral cortex ventricular layer. Orthologous to human GTPBP1 (GTP binding protein 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AL022987; AW045683; C85212; G-protein 1; GP-; GP-1; GP1; GTP-binding protein 1; GTPB; Gtpbp
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391579,574,202 - 79,605,680 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1579,575,046 - 79,605,680 (+)EnsemblGRCm39 Ensembl
GRCm381579,690,001 - 79,721,479 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1579,690,845 - 79,721,479 (+)EnsemblGRCm38mm10GRCm38
MGSCv371579,521,326 - 79,551,909 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361579,518,151 - 79,548,734 (+)NCBIMGSCv36mm8
Celera1581,816,118 - 81,840,485 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.85NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7671812   PMID:8889548   PMID:9070279   PMID:10349636   PMID:10833435   PMID:10922068   PMID:10938096   PMID:11042159   PMID:11054535   PMID:11076861   PMID:12477932   PMID:12520002  
PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:17114649   PMID:19521500   PMID:21873635   PMID:30196744   PMID:30457570   PMID:32161037   PMID:32325033   PMID:32554809  
PMID:33186095  


Genomics

Comparative Map Data
Gtpbp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391579,574,202 - 79,605,680 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1579,575,046 - 79,605,680 (+)EnsemblGRCm39 Ensembl
GRCm381579,690,001 - 79,721,479 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1579,690,845 - 79,721,479 (+)EnsemblGRCm38mm10GRCm38
MGSCv371579,521,326 - 79,551,909 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361579,518,151 - 79,548,734 (+)NCBIMGSCv36mm8
Celera1581,816,118 - 81,840,485 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.85NCBI
GTPBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382238,705,944 - 38,743,115 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2238,705,742 - 38,738,299 (+)EnsemblGRCh38hg38GRCh38
GRCh372239,101,949 - 39,129,592 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362237,431,753 - 37,459,538 (+)NCBINCBI36Build 36hg18NCBI36
Build 342237,426,468 - 37,452,744NCBI
Celera2222,908,486 - 22,936,274 (+)NCBICelera
Cytogenetic Map22q13.1NCBI
HuRef2222,067,767 - 22,095,554 (+)NCBIHuRef
CHM1_12239,060,729 - 39,088,516 (+)NCBICHM1_1
T2T-CHM13v2.02239,176,147 - 39,214,124 (+)NCBIT2T-CHM13v2.0
Gtpbp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87113,128,645 - 113,153,094 (+)NCBIGRCr8
mRatBN7.27111,248,254 - 111,272,705 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7111,248,254 - 111,272,705 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7112,996,115 - 113,020,569 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07115,219,654 - 115,244,107 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07115,189,013 - 115,213,466 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07120,923,274 - 120,947,723 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7120,923,274 - 120,947,723 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07120,914,233 - 120,938,682 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47117,934,168 - 117,957,660 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17117,968,437 - 117,992,715 (+)NCBI
Celera7107,578,590 - 107,603,037 (+)NCBICelera
Cytogenetic Map7q34NCBI
Gtpbp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541324,823,113 - 24,852,691 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541324,823,113 - 24,849,522 (+)NCBIChiLan1.0ChiLan1.0
GTPBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22348,557,003 - 48,589,494 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12251,248,375 - 51,280,843 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02219,621,159 - 19,648,848 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12237,438,398 - 37,465,815 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2237,438,626 - 37,462,933 (+)Ensemblpanpan1.1panPan2
GTPBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11026,074,969 - 26,103,520 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1026,075,169 - 26,100,511 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1026,030,614 - 26,059,034 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01026,865,978 - 26,894,424 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1026,866,203 - 26,894,591 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11026,587,664 - 26,616,108 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01026,898,785 - 26,927,287 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01027,075,494 - 27,104,095 (-)NCBIUU_Cfam_GSD_1.0
Gtpbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049459,617,467 - 9,640,643 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364922,629,352 - 2,651,042 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364922,627,881 - 2,648,295 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GTPBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl59,247,203 - 9,321,899 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.159,294,329 - 9,322,192 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.256,537,795 - 6,565,647 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GTPBP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11921,370,754 - 21,399,208 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1921,370,359 - 21,397,699 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045104,358,759 - 104,386,967 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gtpbp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247529,415,536 - 9,444,315 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247529,416,143 - 9,444,061 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gtpbp1
741 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:577
Count of miRNA genes:361
Interacting mature miRNAs:420
Transcripts:ENSMUST00000046463
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155711700591117153Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577527592104073951Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570349271104073951Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570349271104073951Mouse
1301006Hfib1_mhepatic fibrogenesis 1 (mouse)Not determined154730633481306479Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156533657899341028Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156552537699525499Mouse
1301708Cocrb14_mcocaine related behavior 14 (mouse)Not determined155180651585806651Mouse
1301472Pain1_mpain 1 (mouse)Not determined157532084690813185Mouse
1301860Gct3_mgranulosa cell tumorigenesis 3 (mouse)Not determined154740959681409691Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156316390397163995Mouse
1302002Cocia2_mcocaine induced activation 2 (mouse)Not determined157237245979899178Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
1302080Szs13_mseizure susceptibility 13 (mouse)Not determined155168583285694449Mouse
1301429Pcir3_mperiosteal circumference 3 (mouse)Not determined154846536282465496Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155711700591117153Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
1357756Alaa4_malopecia areata 4 (mouse)Not determined154638964680389845Mouse
1357894Epfpq3_mepididymal fat percentage QTL 3 (mouse)Not determined1578601103102901704Mouse
1558786Msq1_mMAV-1 susceptibility QTL 1 (mouse)Not determined156338964681086436Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156481182698811946Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567270698101270847Mouse
4142060W3q6_mweight 3 weeks QTL 6 (mouse)Not determined78601103102901704Mouse
4142198Hbtq_mhabituation QTL (mouse)Not determined155116070885160833Mouse
10755515Amzn3_manatomical modifier of Zfp423 3 (mouse)154638964680389845Mouse
10402490Dipa5_mdrug induced psychomotor activation 5 (mouse)Not determined1579163411104073951Mouse
10412067Pain2_mpain 2 (mouse)Not determined155164533985645626Mouse
10045637Heal27_mwound healing/regeneration 29 (mouse)Not determined155141836185418511Mouse
12880411V125Dq11_mvitamin D active form serum level QTL 11 (mouse)1578897881104073951Mouse
13504731Cath5_mcarotid atherosclerosis 5 (mouse)155478912988789129Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156158420095584200Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573430144104073951Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
15092079Igly6_mIgG glycosylation 6, GP6 (mouse)157410054082674156Mouse
15092080Igly7_mIgG glycosylation 7, GP10 (mouse)157779491982674156Mouse
27095936Ulnl4_mulna length 4, 5 week (mouse)155676339687684201Mouse
14928306Manh79_mmandible shape 79 (mouse)1578847557104073951Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572382669104073951Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155356339689584203Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154836339698397881Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154216339695497881Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
27226729Tibmd2_mtibia midshaft diameter 2, 5 week (mouse)153800024486684201Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse

Markers in Region
RH127153  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381579,721,173 - 79,721,416UniSTSGRCm38
MGSCv371579,551,603 - 79,551,846UniSTSGRCm37
Celera1581,840,179 - 81,840,422UniSTS
Cytogenetic Map15E3UniSTS
Whitehead/MRC_RH15678.77UniSTS
RH125391  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381579,720,208 - 79,720,303UniSTSGRCm38
MGSCv371579,550,638 - 79,550,733UniSTSGRCm37
Celera1581,839,214 - 81,839,309UniSTS
Cytogenetic Map15E3UniSTS
AW045683  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381579,720,669 - 79,720,803UniSTSGRCm38
MGSCv371579,551,099 - 79,551,233UniSTSGRCm37
Celera1581,839,675 - 81,839,809UniSTS
Cytogenetic Map15E3UniSTS
Whitehead/MRC_RH15678.47UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_013818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006520450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC118227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC037129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC046228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U87965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000046463   ⟹   ENSMUSP00000043575
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,575,046 - 79,605,680 (+)Ensembl
GRCm38.p6 Ensembl1579,690,845 - 79,721,479 (+)Ensembl
RefSeq Acc Id: ENSMUST00000228991   ⟹   ENSMUSP00000154947
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,600,433 - 79,604,312 (+)Ensembl
GRCm38.p6 Ensembl1579,716,232 - 79,720,111 (+)Ensembl
RefSeq Acc Id: ENSMUST00000229046   ⟹   ENSMUSP00000155617
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,578,186 - 79,592,088 (+)Ensembl
GRCm38.p6 Ensembl1579,693,985 - 79,707,887 (+)Ensembl
RefSeq Acc Id: ENSMUST00000229583   ⟹   ENSMUSP00000155748
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,601,207 - 79,603,529 (+)Ensembl
GRCm38.p6 Ensembl1579,717,006 - 79,719,328 (+)Ensembl
RefSeq Acc Id: ENSMUST00000230023
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,592,106 - 79,600,404 (+)Ensembl
GRCm38.p6 Ensembl1579,707,905 - 79,716,203 (+)Ensembl
RefSeq Acc Id: ENSMUST00000230262   ⟹   ENSMUSP00000155719
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,578,381 - 79,596,374 (+)Ensembl
GRCm38.p6 Ensembl1579,694,180 - 79,712,173 (+)Ensembl
RefSeq Acc Id: ENSMUST00000230496
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,603,112 - 79,604,382 (+)Ensembl
GRCm38.p6 Ensembl1579,718,911 - 79,720,181 (+)Ensembl
RefSeq Acc Id: ENSMUST00000230898   ⟹   ENSMUSP00000155128
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,578,160 - 79,591,373 (+)Ensembl
GRCm38.p6 Ensembl1579,693,959 - 79,707,172 (+)Ensembl
RefSeq Acc Id: ENSMUST00000231095   ⟹   ENSMUSP00000155592
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1579,592,092 - 79,600,374 (+)Ensembl
GRCm38.p6 Ensembl1579,707,891 - 79,716,173 (+)Ensembl
RefSeq Acc Id: NM_013818   ⟹   NP_038846
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391579,575,097 - 79,605,680 (+)NCBI
GRCm381579,690,896 - 79,721,479 (+)ENTREZGENE
MGSCv371579,521,326 - 79,551,909 (+)RGD
Celera1581,816,118 - 81,840,485 (+)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006520450   ⟹   XP_006520513
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391579,574,202 - 79,605,680 (+)NCBI
GRCm381579,690,001 - 79,721,479 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036159161   ⟹   XP_036015054
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391579,577,981 - 79,605,680 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_038846   ⟸   NM_013818
- UniProtKB: Q545R1 (UniProtKB/Swiss-Prot),   Q3UGW6 (UniProtKB/Swiss-Prot),   Q3UD96 (UniProtKB/Swiss-Prot),   Q80ZY5 (UniProtKB/Swiss-Prot),   O08582 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006520513   ⟸   XM_006520450
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSMUSP00000043575   ⟸   ENSMUST00000046463
RefSeq Acc Id: ENSMUSP00000155592   ⟸   ENSMUST00000231095
RefSeq Acc Id: ENSMUSP00000155128   ⟸   ENSMUST00000230898
RefSeq Acc Id: ENSMUSP00000155719   ⟸   ENSMUST00000230262
RefSeq Acc Id: ENSMUSP00000155748   ⟸   ENSMUST00000229583
RefSeq Acc Id: ENSMUSP00000155617   ⟸   ENSMUST00000229046
RefSeq Acc Id: ENSMUSP00000154947   ⟸   ENSMUST00000228991
RefSeq Acc Id: XP_036015054   ⟸   XM_036159161
- Peptide Label: isoform X1
Protein Domains
tr-type G

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O08582-F1-model_v2 AlphaFold O08582 1-668 view protein structure

Promoters
RGD ID:6826079
Promoter ID:MM_KWN:19079
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   Spleen
Transcripts:ENSMUST00000046463
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361579,520,696 - 79,521,527 (+)MPROMDB
RGD ID:6847194
Promoter ID:MM_ACW:18688
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   Lung
Transcripts:GTPBP1.CSEP07,   GTPBP1.FSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361579,524,221 - 79,524,721 (+)MPROMDB
RGD ID:8684366
Promoter ID:EPDNEW_M20214
Type:multiple initiation site
Name:Gtpbp1_1
Description:Mus musculus GTP binding protein 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381579,690,896 - 79,690,956EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:109443 AgrOrtholog
Ensembl Genes ENSMUSG00000042535 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000046463 ENTREZGENE
  ENSMUST00000046463.10 UniProtKB/Swiss-Prot
  ENSMUST00000228991.2 UniProtKB/TrEMBL
  ENSMUST00000229046.2 UniProtKB/TrEMBL
  ENSMUST00000229583.2 UniProtKB/TrEMBL
  ENSMUST00000230262.2 UniProtKB/TrEMBL
  ENSMUST00000230898.2 UniProtKB/TrEMBL
  ENSMUST00000231095.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Translation factors UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro EFTu-like_2 UniProtKB/Swiss-Prot
  GTPBP1-like UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TF_GTP-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transl_B-barrel_sf UniProtKB/Swiss-Prot
  Transl_elong_EF1A/Init_IF2_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:14904 UniProtKB/Swiss-Prot
MGD MGI:109443 ENTREZGENE
NCBI Gene 14904 ENTREZGENE
PANTHER ELONGATION FACTOR TU-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR43721:SF9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam GTP_EFTU UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GTP_EFTU_D2 UniProtKB/Swiss-Prot
PhenoGen Gtpbp1 PhenoGen
PROSITE G_TR_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50447 UniProtKB/Swiss-Prot
  SSF50465 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A2R8VHC2_MOUSE UniProtKB/TrEMBL
  A0A2R8VI47_MOUSE UniProtKB/TrEMBL
  A0A2R8VKJ2_MOUSE UniProtKB/TrEMBL
  A0A2R8W6M4_MOUSE UniProtKB/TrEMBL
  A0A2R8W6Z1_MOUSE UniProtKB/TrEMBL
  A0A2R8W725_MOUSE UniProtKB/TrEMBL
  GTPB1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3UD96 ENTREZGENE
  Q3UGW6 ENTREZGENE
  Q545R1 ENTREZGENE
  Q80ZY5 ENTREZGENE
UniProt Secondary Q3UD96 UniProtKB/Swiss-Prot
  Q3UGW6 UniProtKB/Swiss-Prot
  Q545R1 UniProtKB/Swiss-Prot
  Q80ZY5 UniProtKB/Swiss-Prot