Gtpbp1 (GTP binding protein 1) - Rat Genome Database

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Gene: Gtpbp1 (GTP binding protein 1) Chinchilla lanigera
Analyze
Symbol: Gtpbp1
Name: GTP binding protein 1
RGD ID: 8735913
Description: ENCODES a protein that exhibits alpha-aminoacyl-tRNA binding (ortholog); GTPase activity (ortholog); translation elongation factor activity (ortholog); INVOLVED IN cytoplasmic translation (ortholog); GTP metabolic process (ortholog); positive regulation of mRNA catabolic process (ortholog); ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); Emery-Dreifuss muscular dystrophy (ortholog); myoclonic dystonia 26 (ortholog); FOUND IN cytoplasmic exosome (RNase complex) (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: GTP-binding protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541324,823,113 - 24,852,691 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541324,823,113 - 24,849,522 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gtpbp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541324,823,113 - 24,852,691 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541324,823,113 - 24,849,522 (+)NCBIChiLan1.0ChiLan1.0
GTPBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382238,705,944 - 38,743,115 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2238,705,742 - 38,738,299 (+)EnsemblGRCh38hg38GRCh38
GRCh372239,101,949 - 39,129,592 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362237,431,753 - 37,459,538 (+)NCBINCBI36Build 36hg18NCBI36
Build 342237,426,468 - 37,452,744NCBI
Celera2222,908,486 - 22,936,274 (+)NCBICelera
Cytogenetic Map22q13.1NCBI
HuRef2222,067,767 - 22,095,554 (+)NCBIHuRef
CHM1_12239,060,729 - 39,088,516 (+)NCBICHM1_1
T2T-CHM13v2.02239,176,147 - 39,214,124 (+)NCBIT2T-CHM13v2.0
Gtpbp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391579,574,202 - 79,605,680 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1579,575,046 - 79,605,680 (+)EnsemblGRCm39 Ensembl
GRCm381579,690,001 - 79,721,479 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1579,690,845 - 79,721,479 (+)EnsemblGRCm38mm10GRCm38
MGSCv371579,521,326 - 79,551,909 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361579,518,151 - 79,548,734 (+)NCBIMGSCv36mm8
Celera1581,816,118 - 81,840,485 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.85NCBI
Gtpbp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87113,128,645 - 113,153,094 (+)NCBIGRCr8
mRatBN7.27111,248,254 - 111,272,705 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7111,248,254 - 111,272,705 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7112,996,115 - 113,020,569 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07115,219,654 - 115,244,107 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07115,189,013 - 115,213,466 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07120,923,274 - 120,947,723 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7120,923,274 - 120,947,723 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07120,914,233 - 120,938,682 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47117,934,168 - 117,957,660 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17117,968,437 - 117,992,715 (+)NCBI
Celera7107,578,590 - 107,603,037 (+)NCBICelera
Cytogenetic Map7q34NCBI
GTPBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22348,557,003 - 48,589,494 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12251,248,375 - 51,280,843 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02219,621,159 - 19,648,848 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12237,438,398 - 37,465,815 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2237,438,626 - 37,462,933 (+)Ensemblpanpan1.1panPan2
GTPBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11026,074,969 - 26,103,520 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1026,075,169 - 26,100,511 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1026,030,614 - 26,059,034 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01026,865,978 - 26,894,424 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1026,866,203 - 26,894,591 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11026,587,664 - 26,616,108 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01026,898,785 - 26,927,287 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01027,075,494 - 27,104,095 (-)NCBIUU_Cfam_GSD_1.0
Gtpbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049459,617,467 - 9,640,643 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364922,629,352 - 2,651,042 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364922,627,881 - 2,648,295 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GTPBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl59,247,203 - 9,321,899 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.159,294,329 - 9,322,192 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.256,537,795 - 6,565,647 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GTPBP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11921,370,754 - 21,399,208 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1921,370,359 - 21,397,699 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045104,358,759 - 104,386,967 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gtpbp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247529,415,536 - 9,444,315 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247529,416,143 - 9,444,061 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000024677   ⟹   ENSCLAP00000024442
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541324,823,113 - 24,852,691 (+)Ensembl
RefSeq Acc Id: XM_005379270   ⟹   XP_005379327
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541324,823,113 - 24,849,522 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005379327 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000024442
  ENSCLAP00000024442.1
Reference Protein Sequences
RefSeq Acc Id: XP_005379327   ⟸   XM_005379270
- UniProtKB: A0A8C2WB53 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000024442   ⟸   ENSCLAT00000024677
Protein Domains
tr-type G


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016782 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000024677 ENTREZGENE
  ENSCLAT00000024677.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
  Translation factors UniProtKB/TrEMBL
InterPro EFTu-like_2 UniProtKB/TrEMBL
  GTPBP1-like UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  T_Tr_GTP-bd_dom UniProtKB/TrEMBL
  Transl_B-barrel_sf UniProtKB/TrEMBL
  Transl_elong_EF1A/Init_IF2_C UniProtKB/TrEMBL
NCBI Gene Gtpbp1 ENTREZGENE
PANTHER ELONGATION FACTOR TU-RELATED UniProtKB/TrEMBL
  PTHR43721:SF9 UniProtKB/TrEMBL
Pfam GTP_EFTU UniProtKB/TrEMBL
  GTP_EFTU_D2 UniProtKB/TrEMBL
PROSITE G_TR_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF50447 UniProtKB/TrEMBL
  SSF50465 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A8C2WB53 ENTREZGENE, UniProtKB/TrEMBL