Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | esophagus squamous cell carcinoma | | ISO | CAPZA1 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:21517111 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | esophagus squamous cell carcinoma | | ISO | CAPZA1 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:21517111 | |
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# | Reference Title | Reference Citation |
1. | Electronic Transfer of Homolog Data | MGD and Homologene mouse data transfer |
2. | MGDs mouse GO annotations | MGD data from the GO Consortium |
3. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
4. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
5. | Dynactin. | Schroer TA, Annu Rev Cell Dev Biol. 2004;20:759-79. |
PMID:9119363 | PMID:9331217 | PMID:10349636 | PMID:10493740 | PMID:11042159 | PMID:11076861 | PMID:11217851 | PMID:11604420 | PMID:12466851 | PMID:12477932 | PMID:14610273 | PMID:15489334 |
PMID:16054028 | PMID:16141072 | PMID:16141073 | PMID:16870209 | PMID:16895918 | PMID:16944949 | PMID:16987810 | PMID:16998848 | PMID:17656356 | PMID:17967808 | PMID:18364747 | PMID:18723693 |
PMID:18799693 | PMID:20360068 | PMID:20884878 | PMID:21267068 | PMID:21589869 | PMID:21873635 | PMID:22114352 | PMID:22794259 | PMID:22882973 | PMID:22918941 | PMID:23793062 | PMID:24457600 |
PMID:24614889 | PMID:24778263 | PMID:26370502 | PMID:27185186 | PMID:28378742 | PMID:28803871 | PMID:29518331 | PMID:30351272 | PMID:31162944 | PMID:32133840 | PMID:32325033 | PMID:32554809 |
PMID:32581705 | PMID:33601422 | PMID:38273307 | PMID:38355793 |
Capza1 (Mus musculus - house mouse) |
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CAPZA1 (Homo sapiens - human) |
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Capza1 (Rattus norvegicus - Norway rat) |
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Capza1 (Chinchilla lanigera - long-tailed chinchilla) |
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CAPZA1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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CAPZA1 (Canis lupus familiaris - dog) |
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Capza1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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CAPZA1 (Sus scrofa - pig) |
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CAPZA1 (Chlorocebus sabaeus - green monkey) |
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Capza1 (Heterocephalus glaber - naked mole-rat) |
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Variants in Capza1
1644 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
U16740 |
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Capza1 |
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RefSeq Transcripts | NM_001355044 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_009797 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC171110 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AK146296 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK147049 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK149602 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK151253 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK152364 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK161370 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK163418 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK165655 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK166484 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK166964 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK167193 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK168099 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK168916 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK169806 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC003915 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC016232 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC085506 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BY442029 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH466608 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
U16740 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSMUST00000094028 ⟹ ENSMUSP00000102381 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000155476 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000195912 ⟹ ENSMUSP00000142606 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000196924 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001355044 ⟹ NP_001341973 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_009797 ⟹ NP_033927 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_001341973 | (Get FASTA) | NCBI Sequence Viewer |
NP_033927 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAC00566 | (Get FASTA) | NCBI Sequence Viewer |
AAH03915 | (Get FASTA) | NCBI Sequence Viewer | |
AAH16232 | (Get FASTA) | NCBI Sequence Viewer | |
AAH85506 | (Get FASTA) | NCBI Sequence Viewer | |
BAE27053 | (Get FASTA) | NCBI Sequence Viewer | |
BAE27635 | (Get FASTA) | NCBI Sequence Viewer | |
BAE28985 | (Get FASTA) | NCBI Sequence Viewer | |
BAE30242 | (Get FASTA) | NCBI Sequence Viewer | |
BAE31154 | (Get FASTA) | NCBI Sequence Viewer | |
BAE37341 | (Get FASTA) | NCBI Sequence Viewer | |
BAE38802 | (Get FASTA) | NCBI Sequence Viewer | |
BAE39147 | (Get FASTA) | NCBI Sequence Viewer | |
BAE39323 | (Get FASTA) | NCBI Sequence Viewer | |
BAE40729 | (Get FASTA) | NCBI Sequence Viewer | |
BAE41380 | (Get FASTA) | NCBI Sequence Viewer | |
EDL07559 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSMUSP00000102381 | ||
ENSMUSP00000102381.4 | |||
ENSMUSP00000142606.2 | |||
GenBank Protein | P47753 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_033927 ⟸ NM_009797 |
- Peptide Label: | isoform 1 |
- UniProtKB: | Q91YN7 (UniProtKB/Swiss-Prot), P47753 (UniProtKB/Swiss-Prot), Q5RKN9 (UniProtKB/TrEMBL), Q3UAS2 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | NP_001341973 ⟸ NM_001355044 |
- Peptide Label: | isoform 2 |
RefSeq Acc Id: | ENSMUSP00000102381 ⟸ ENSMUST00000094028 |
RefSeq Acc Id: | ENSMUSP00000142606 ⟸ ENSMUST00000195912 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-P47753-F1-model_v2 | AlphaFold | P47753 | 1-286 | view protein structure |
RGD ID: | 6833528 | ||||||||
Promoter ID: | MM_KWN:35638 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | 3T3L1_Day4, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, Kidney, Liver, Lung, MEF_B4, Spleen | ||||||||
Transcripts: | OTTMUST00000052870, OTTMUST00000052871 | ||||||||
Position: |
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RGD ID: | 6881914 | ||||||||
Promoter ID: | EPDNEW_M4408 | ||||||||
Type: | initiation region | ||||||||
Name: | Capza1_1 | ||||||||
Description: | Mus musculus capping protein muscle Z-line, alpha 1 , transcriptvariant 1, mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_M4410 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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RGD ID: | 6881918 | ||||||||
Promoter ID: | EPDNEW_M4410 | ||||||||
Type: | single initiation site | ||||||||
Name: | Capza1_2 | ||||||||
Description: | Mus musculus capping protein muscle Z-line, alpha 1 , transcriptvariant 1, mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_M4408 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | MGI:106227 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000070372 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSMUST00000094028 | ENTREZGENE |
ENSMUST00000094028.10 | UniProtKB/TrEMBL | |
ENSMUST00000195912.2 | UniProtKB/TrEMBL | |
Gene3D-CATH | 3.30.1140.60 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
3.90.1150.210 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
InterPro | CapZ_alpha | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
CapZ_alpha/beta | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
CapZ_alpha/beta_2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
CapZ_alpha_1 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
F-actin_cap_asu_CS | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
MGD | MGI:106227 | ENTREZGENE |
NCBI Gene | 12340 | ENTREZGENE |
PANTHER | F-ACTIN-CAPPING PROTEIN SUBUNIT ALPHA-1 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PTHR10653 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | F-actin_cap_A | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PhenoGen | Capza1 | PhenoGen |
PRINTS | FACTINCAPA | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PROSITE | F_ACTIN_CAPPING_A_1 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
F_ACTIN_CAPPING_A_2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Superfamily-SCOP | SSF90096 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
UniProt | A0A0G2JE27_MOUSE | UniProtKB/TrEMBL |
CAZA1_MOUSE | UniProtKB/Swiss-Prot, ENTREZGENE | |
Q3TLJ0_MOUSE | UniProtKB/TrEMBL | |
Q3UAS2 | ENTREZGENE, UniProtKB/TrEMBL | |
Q3UJV2_MOUSE | UniProtKB/TrEMBL | |
Q5RKN9 | ENTREZGENE, UniProtKB/TrEMBL | |
Q91YN7 | ENTREZGENE | |
Q99L12_MOUSE | UniProtKB/TrEMBL | |
UniProt Secondary | Q91YN7 | UniProtKB/Swiss-Prot |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2022-06-14 | Capza1 | capping actin protein of muscle Z-line subunit alpha 1 | Capza1 | capping protein (actin filament) muscle Z-line, alpha 1 | Symbol and/or name change | 5135510 | APPROVED |