Abcg4 (ATP binding cassette subfamily G member 4) - Rat Genome Database

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Gene: Abcg4 (ATP binding cassette subfamily G member 4) Mus musculus
Analyze
Symbol: Abcg4
Name: ATP binding cassette subfamily G member 4
RGD ID: 1314116
MGI Page MGI
Description: Enables ABC-type sterol transporter activity. Involved in several processes, including cholesterol efflux; cholesterol homeostasis; and positive regulation of cholesterol biosynthetic process. Acts upstream of or within cellular response to leukemia inhibitory factor. Located in endosome membrane. Is expressed in several structures, including genitourinary system; immune system; liver; nervous system; and sensory organ. Orthologous to human ABCG4 (ATP binding cassette subfamily G member 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 6430517O04Rik; ATP-binding cassette sub-family G member 4; ATP-binding cassette subfamily G member 4; ATP-binding cassette transporter White2; ATP-binding cassette, sub-family G (WHITE), member 4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39944,184,485 - 44,199,953 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl944,184,485 - 44,199,912 (-)EnsemblGRCm39 Ensembl
GRCm38944,273,188 - 44,288,656 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl944,273,188 - 44,288,615 (-)EnsemblGRCm38mm10GRCm38
MGSCv37944,081,273 - 44,096,327 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36944,024,185 - 44,039,239 (-)NCBIMGSCv36mm8
Celera941,524,179 - 41,542,258 (-)NCBICelera
Cytogenetic Map9A5.2NCBI
cM Map924.84NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11856881   PMID:12137944   PMID:12140190   PMID:12183068   PMID:12477932   PMID:14681479   PMID:15210959  
PMID:16141072   PMID:16141073   PMID:16458078   PMID:16556852   PMID:16902247   PMID:17916878   PMID:18039927   PMID:19633360   PMID:20439489   PMID:21267068   PMID:21873635   PMID:23584088  
PMID:29042617  


Genomics

Comparative Map Data
Abcg4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39944,184,485 - 44,199,953 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl944,184,485 - 44,199,912 (-)EnsemblGRCm39 Ensembl
GRCm38944,273,188 - 44,288,656 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl944,273,188 - 44,288,615 (-)EnsemblGRCm38mm10GRCm38
MGSCv37944,081,273 - 44,096,327 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36944,024,185 - 44,039,239 (-)NCBIMGSCv36mm8
Celera941,524,179 - 41,542,258 (-)NCBICelera
Cytogenetic Map9A5.2NCBI
cM Map924.84NCBI
ABCG4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811119,149,052 - 119,162,666 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11119,149,052 - 119,162,653 (+)EnsemblGRCh38hg38GRCh38
GRCh3711119,019,762 - 119,033,375 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611118,524,960 - 118,538,585 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411118,524,959 - 118,538,582NCBI
Celera11116,179,542 - 116,193,169 (+)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11114,959,176 - 114,972,795 (+)NCBIHuRef
CHM1_111118,906,025 - 118,919,644 (+)NCBICHM1_1
T2T-CHM13v2.011119,169,420 - 119,183,034 (+)NCBIT2T-CHM13v2.0
Abcg4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8853,508,005 - 53,525,314 (-)NCBIGRCr8
mRatBN7.2844,611,187 - 44,629,818 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl844,611,187 - 44,626,881 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx850,106,894 - 50,122,653 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0848,385,612 - 48,401,373 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0846,255,973 - 46,271,544 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0848,604,915 - 48,626,219 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl848,606,403 - 48,619,592 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0847,222,818 - 47,239,879 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4847,251,688 - 47,267,439 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1847,260,443 - 47,276,083 (-)NCBI
Celera844,197,283 - 44,212,991 (-)NCBICelera
Cytogenetic Map8q22NCBI
Abcg4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541220,256,293 - 20,271,278 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541220,256,467 - 20,270,172 (+)NCBIChiLan1.0ChiLan1.0
ABCG4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29119,854,305 - 119,867,959 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111120,957,972 - 120,971,650 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011113,987,709 - 114,001,354 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111117,912,156 - 117,929,636 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11117,916,043 - 117,929,636 (+)Ensemblpanpan1.1panPan2
ABCG4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1514,707,964 - 14,720,782 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl514,707,960 - 14,721,240 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha514,761,090 - 14,774,692 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0514,651,354 - 14,664,956 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl514,651,065 - 14,664,525 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1514,789,439 - 14,803,035 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0514,693,637 - 14,707,228 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0514,733,867 - 14,747,471 (-)NCBIUU_Cfam_GSD_1.0
Abcg4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947101,169,434 - 101,184,594 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365424,091,283 - 4,105,370 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365424,090,282 - 4,106,025 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABCG4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl946,364,936 - 46,380,544 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1946,364,546 - 46,380,545 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2951,400,073 - 51,415,683 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ABCG4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11110,522,773 - 110,537,747 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1110,524,900 - 110,537,735 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604315,496,242 - 15,509,994 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Abcg4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478414,529,976 - 14,545,246 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478414,529,957 - 14,545,125 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Abcg4
386 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3118
Count of miRNA genes:743
Interacting mature miRNAs:969
Transcripts:ENSMUST00000034648, ENSMUST00000085979, ENSMUST00000159385, ENSMUST00000159997, ENSMUST00000160323, ENSMUST00000160384, ENSMUST00000161206, ENSMUST00000161354, ENSMUST00000161408, ENSMUST00000162783
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300532Tbs2_mtuberculosis severity 2 (mouse)Not determined91236997046370114Mouse
10043917Obq37_mobesity QTL 37 (mouse)Not determined91339117547391175Mouse
1357637Si5lq2_mserum IGFBP-5 level QTL 2 (mouse)Not determined91541175149411890Mouse
4141591Cq4_mcholesterol QTL 4 (mouse)Not determined91541175149411890Mouse
1301421Lgth4_mbody length 4 (mouse)Not determined91541175149411890Mouse
4141447Cfmq2_mcystic fibrosis modifier QTL 2 (mouse)Not determined91541175149411890Mouse
12790993Adq1_maortic diameter QTL 1 (mouse)91574962749749627Mouse
11354951Pdcc3_mplasmacytoid dentritic cell compartment 3 (mouse)91574962749749627Mouse
12790997Adq2_maortic diameter QTL 2 (mouse)91574962749749627Mouse
12880415V125Dq7_mvitamin D active form serum level QTL 7 (mouse)91601129650011296Mouse
12880416V125Dq8_mvitamin D active form serum level QTL 8 (mouse)91601129650011296Mouse
13504834Hdlq109_mHDL QTL 109 (mouse)91670964150709641Mouse
1357465Vtbt6_mvertebral trabecular bone trait 6 (mouse)Not determined91697884050978943Mouse
1300643Pvcan2_mprotection against vaginal candidiasis 2 (mouse)Not determined91994340653943525Mouse
1301439Morph2_mmorphine antinociception 2 (mouse)Not determined92015336254153492Mouse
1301883Skull12_mskull morphology 12 (mouse)Not determined92030619754306370Mouse
1301045Sluc10_msusceptibility to lung cancer 10 (mouse)Not determined92030619754306370Mouse
10043950Pbft5_mpercent body fat 5 (mouse)Not determined92030619754306370Mouse
4142352Lmr17_mleishmaniasis resistance 17 (mouse)Not determined92030619754306370Mouse
12904939Edlmmq8_mextensor digitorum longus muscle mass QTL 8 (mouse)92085274054852740Mouse
13208563Bmiq8_mbody mass index QTL 8 (mouse)92491129668907282Mouse
11532712Sluc39d_msusceptibility to lung cancer 39d (mouse)92558748559587581Mouse
11532696Sluc39c_msusceptibility to lung cancer 39c (mouse)92558748559587581Mouse
11532694Sluc39a_msusceptibility to lung cancer 39a (mouse)92558748559587581Mouse
11532695Sluc39b_msusceptibility to lung cancer 39b (mouse)92558748559587581Mouse
10043987Stheal13_msoft tissue heal 13 (mouse)Not determined92679642160796552Mouse
1300932Hdlq17_mHDL QTL 17 (mouse)Not determined92679642160796552Mouse
10043867Mtbcq9_mmultiple trait body composition QTL 9 (mouse)Not determined92679642160796552Mouse
10043878Adip20_madiposity 20 (mouse)Not determined92725119461251323Mouse
10043847Hdlq89_mHDL QTL 89 (mouse)Not determined92929292963293072Mouse
1301782Chol11_mcholesterol 11 (mouse)Not determined92929292963293072Mouse
1301365Ap5q_malcohol preference 5 QTL (mouse)Not determined93005316464053277Mouse
1357746Vtbt7_mvertebral trabecular bone trait 7 (mouse)Not determined93073991564740021Mouse
1302180Actd4_mactivity-distance traveled 4 (mouse)Not determined93243456366434857Mouse
4141148Cq5_mcholesterol QTL 5 (mouse)Not determined93245242166452546Mouse
1301692Hts_mhypothermia sensitivity (mouse)Not determined93251117266511421Mouse
4141323Ptnu3_mproteinuria 3 (mouse)Not determined93288970266889836Mouse
1357709Si5lq3_mserum IGFBP-5 level QTL 3 (mouse)Not determined93311102567111140Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93397884073439255Mouse
1301252Etohc3_methanol consumption 3 (mouse)Not determined93503447869034599Mouse
1301972Cocrb8_mcocaine related behavior 8 (mouse)Not determined93503447869034599Mouse
1558968Tbdr1_mbody temperature response to dietary restriction, QTL 1 (mouse)Not determined93503447869034599Mouse
10045613Rapop7_mradiation-induced apoptosis 6 (mouse)Not determined93673624349420511Mouse
1301501Lmr2_mleishmaniasis resistance 2 (mouse)Not determined93694340650111140Mouse
1301007Pid2_mprion incubation determinant 2 (mouse)Not determined93715336244251323Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
10043971Obq32_mobesity QTL 32 (mouse)Not determined93781952871819528Mouse
12790986Pcho9_mplasma cholesterol 9 (mouse)93809957572099575Mouse
12790992Arlsq1_maortic root lesion size QTL 1 (mouse)93809957572099575Mouse
12791002Arlsq2_maortic root lesion size QTL 2 (mouse)93809957572099575Mouse
12738449Spcq2_msperm count QTL 2 (mouse)93939988573399885Mouse
1558993Tdmq1_mtype 2 diabetes modifying QTL 1 (mouse)Not determined94041959451808670Mouse
4141071Ath29_matherosclerosis 29 (mouse)Not determined94041959474607925Mouse
11532693Sluc39_msusceptibility to lung cancer 39 (mouse)94064537448351476Mouse
1301702Brm1_mbrachyury modifier 1 (mouse)Not determined94080504774805204Mouse
12738415Lfibq8_mliver fibrosis QTL 8 (mouse)94140216245343743Mouse
1301558Stheal8_msoft tissue heal 8 (mouse)Not determined94348071477480860Mouse
10045639Heal28_mwound healing/regeneration 28 (mouse)Not determined94348071477480860Mouse
13432191Actrse4_mactivity response to saline/ethanol 4 (mouse)94370321448603195Mouse

Markers in Region
UniSTS:236109  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38944,273,215 - 44,273,511UniSTSGRCm38
MGSCv37944,081,298 - 44,081,594UniSTSGRCm37
Celera941,524,204 - 41,524,500UniSTS
Cytogenetic Map9A5.3UniSTS
Abcg4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9A5.3UniSTS
cM Map9 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_138955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC124577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF378330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF411084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF425077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH011944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ426047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK043147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK138415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY040865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC030301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC059033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000034648   ⟹   ENSMUSP00000034648
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl944,184,485 - 44,198,841 (-)Ensembl
GRCm38.p6 Ensembl944,273,188 - 44,287,544 (-)Ensembl
RefSeq Acc Id: ENSMUST00000085979
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl944,185,749 - 44,191,135 (-)Ensembl
GRCm38.p6 Ensembl944,274,452 - 44,279,838 (-)Ensembl
RefSeq Acc Id: ENSMUST00000159385
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl944,184,485 - 44,189,911 (-)Ensembl
GRCm38.p6 Ensembl944,273,188 - 44,278,614 (-)Ensembl
RefSeq Acc Id: ENSMUST00000159997
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl944,188,800 - 44,191,088 (-)Ensembl
GRCm38.p6 Ensembl944,277,503 - 44,279,791 (-)Ensembl
RefSeq Acc Id: ENSMUST00000160323
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl944,188,368 - 44,198,833 (-)Ensembl
GRCm38.p6 Ensembl944,277,071 - 44,287,536 (-)Ensembl
RefSeq Acc Id: ENSMUST00000160384   ⟹   ENSMUSP00000124583
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl944,193,206 - 44,199,435 (-)Ensembl
GRCm38.p6 Ensembl944,281,909 - 44,288,138 (-)Ensembl
RefSeq Acc Id: ENSMUST00000161206
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl944,191,945 - 44,192,955 (-)Ensembl
GRCm38.p6 Ensembl944,280,648 - 44,281,658 (-)Ensembl
RefSeq Acc Id: ENSMUST00000161354   ⟹   ENSMUSP00000124647
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl944,184,485 - 44,199,912 (-)Ensembl
GRCm38.p6 Ensembl944,273,188 - 44,288,615 (-)Ensembl
RefSeq Acc Id: ENSMUST00000161408   ⟹   ENSMUSP00000124154
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl944,193,143 - 44,199,654 (-)Ensembl
GRCm38.p6 Ensembl944,281,846 - 44,288,357 (-)Ensembl
RefSeq Acc Id: ENSMUST00000162783   ⟹   ENSMUSP00000123999
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl944,186,392 - 44,190,897 (-)Ensembl
GRCm38.p6 Ensembl944,275,095 - 44,279,600 (-)Ensembl
RefSeq Acc Id: NM_138955   ⟹   NP_620405
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39944,184,487 - 44,199,541 (-)NCBI
GRCm38944,273,190 - 44,288,244 (-)NCBI
MGSCv37944,081,273 - 44,096,327 (-)RGD
Celera941,524,179 - 41,542,258 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011242421   ⟹   XP_011240723
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39944,184,488 - 44,199,953 (-)NCBI
GRCm38944,273,191 - 44,288,656 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244129   ⟹   XP_030099989
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39944,184,485 - 44,199,387 (-)NCBI
GRCm38944,273,188 - 44,288,090 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_620405   ⟸   NM_138955
- UniProtKB: Q8K4E1 (UniProtKB/Swiss-Prot),   Q8VBS9 (UniProtKB/Swiss-Prot),   Q91WA9 (UniProtKB/TrEMBL),   Q8BXW2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011240723   ⟸   XM_011242421
- Peptide Label: isoform X1
- UniProtKB: Q8K4E1 (UniProtKB/Swiss-Prot),   Q8VBS9 (UniProtKB/Swiss-Prot),   Q91WA9 (UniProtKB/TrEMBL),   Q8BXW2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030099989   ⟸   XM_030244129
- Peptide Label: isoform X2
- UniProtKB: Q8R1U5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000034648   ⟸   ENSMUST00000034648
RefSeq Acc Id: ENSMUSP00000124583   ⟸   ENSMUST00000160384
RefSeq Acc Id: ENSMUSP00000123999   ⟸   ENSMUST00000162783
RefSeq Acc Id: ENSMUSP00000124154   ⟸   ENSMUST00000161408
RefSeq Acc Id: ENSMUSP00000124647   ⟸   ENSMUST00000161354
Protein Domains
ABC transporter   ABC transporter family G   ABC-2 type transporter transmembrane

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q91WA9-F1-model_v2 AlphaFold Q91WA9 1-646 view protein structure

Promoters
RGD ID:6844024
Promoter ID:MM_KWN:57100
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000072564
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36944,086,141 - 44,087,492 (-)MPROMDB
RGD ID:6844023
Promoter ID:MM_KWN:57103
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain
Transcripts:OTTMUST00000072560,   OTTMUST00000072561,   OTTMUST00000072562,   OTTMUST00000072565,   OTTMUST00000072566
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36944,096,291 - 44,097,412 (-)MPROMDB
RGD ID:8669362
Promoter ID:EPDNEW_M12712
Type:initiation region
Name:Abcg4_1
Description:Mus musculus ATP binding cassette subfamily G member 4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38944,288,339 - 44,288,399EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1890594 AgrOrtholog
Ensembl Genes ENSMUSG00000032131 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000034648.16 UniProtKB/Swiss-Prot
  ENSMUST00000160384.2 UniProtKB/TrEMBL
  ENSMUST00000161354 ENTREZGENE
  ENSMUST00000161354.9 UniProtKB/Swiss-Prot
  ENSMUST00000161408.2 UniProtKB/TrEMBL
  ENSMUST00000162783.8 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ABC_2_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ABC_transporter-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ABC_transporter_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ABCG_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:192663 UniProtKB/Swiss-Prot
MGD MGI:1890594 ENTREZGENE
NCBI Gene 192663 ENTREZGENE
PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATP-BINDING CASSETTE SUB-FAMILY G MEMBER 4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ABC2_membrane UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ABC2_membrane_7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ABC_tran UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Abcg4 PhenoGen
PROSITE ABC_TRANSPORTER_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ABC_TRANSPORTER_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART AAA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt ABCG4_MOUSE UniProtKB/Swiss-Prot
  E0CY02_MOUSE UniProtKB/TrEMBL
  E0CYI8_MOUSE UniProtKB/TrEMBL
  F6XWY6_MOUSE UniProtKB/TrEMBL
  Q3U009_MOUSE UniProtKB/TrEMBL
  Q3UUH6_MOUSE UniProtKB/TrEMBL
  Q8BXW2 ENTREZGENE, UniProtKB/TrEMBL
  Q8K4E1 ENTREZGENE
  Q8R0S5_MOUSE UniProtKB/TrEMBL
  Q8R1U5 ENTREZGENE, UniProtKB/TrEMBL
  Q8VBS9 ENTREZGENE
  Q91WA9 ENTREZGENE
  Q9CU34_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q8K4E1 UniProtKB/Swiss-Prot
  Q8VBS9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-08-22 Abcg4  ATP binding cassette subfamily G member 4    ATP-binding cassette, sub-family G (WHITE), member 4  Symbol and/or name change 5135510 APPROVED