Cybrd1 (cytochrome b reductase 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Cybrd1 (cytochrome b reductase 1) Mus musculus
Analyze
Symbol: Cybrd1
Name: cytochrome b reductase 1
RGD ID: 1313952
MGI Page MGI
Description: Enables transmembrane ascorbate ferrireductase activity. Acts upstream of or within response to iron ion. Located in brush border membrane. Is expressed in several structures, including central nervous system; foregut; gonad; retina; and trachea. Orthologous to human CYBRD1 (cytochrome b reductase 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2210407P13Rik; Dcytb; duodenal cytochrome b; plasma membrane ascorbate-dependent reductase CYBRD1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39270,948,398 - 70,973,270 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl270,948,267 - 70,973,270 (+)EnsemblGRCm39 Ensembl
GRCm38271,118,054 - 71,142,926 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl271,117,923 - 71,142,926 (+)EnsemblGRCm38mm10GRCm38
MGSCv37270,956,111 - 70,980,983 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36270,913,320 - 70,943,769 (+)NCBIMGSCv36mm8
Celera272,782,272 - 72,807,772 (+)NCBICelera
Cytogenetic Map2C2NCBI
cM Map242.38NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Cellular iron uptake, trafficking and metabolism: Key molecules and mechanisms and their roles in disease. Lane DJ, etal., Biochim Biophys Acta. 2015 May;1853(5):1130-44. doi: 10.1016/j.bbamcr.2015.01.021. Epub 2015 Feb 4.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11230685   PMID:12477932   PMID:12704390   PMID:14499595   PMID:14610273   PMID:14681479   PMID:15469906   PMID:15764147   PMID:15961514  
PMID:16141072   PMID:16141073   PMID:16326980   PMID:16602821   PMID:17068337   PMID:18498772   PMID:19864314   PMID:21267068   PMID:21359624   PMID:21873635   PMID:22990466   PMID:23981688  
PMID:24194600   PMID:27325674   PMID:27626380  


Genomics

Comparative Map Data
Cybrd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39270,948,398 - 70,973,270 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl270,948,267 - 70,973,270 (+)EnsemblGRCm39 Ensembl
GRCm38271,118,054 - 71,142,926 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl271,117,923 - 71,142,926 (+)EnsemblGRCm38mm10GRCm38
MGSCv37270,956,111 - 70,980,983 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36270,913,320 - 70,943,769 (+)NCBIMGSCv36mm8
Celera272,782,272 - 72,807,772 (+)NCBICelera
Cytogenetic Map2C2NCBI
cM Map242.38NCBI
CYBRD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382171,522,233 - 171,558,129 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2171,522,247 - 171,558,129 (+)EnsemblGRCh38hg38GRCh38
GRCh372172,378,743 - 172,414,639 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362172,087,229 - 172,122,885 (+)NCBINCBI36Build 36hg18NCBI36
Build 342172,204,493 - 172,240,144NCBI
Celera2165,995,455 - 166,031,219 (+)NCBICelera
Cytogenetic Map2q31.1NCBI
HuRef2164,264,213 - 164,300,158 (+)NCBIHuRef
CHM1_12172,385,534 - 172,421,413 (+)NCBICHM1_1
T2T-CHM13v2.02171,999,382 - 172,035,283 (+)NCBIT2T-CHM13v2.0
Cybrd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8376,342,231 - 76,369,846 (+)NCBIGRCr8
mRatBN7.2355,934,874 - 55,962,132 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl355,934,874 - 55,962,108 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx359,332,726 - 59,359,977 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0367,916,303 - 67,943,578 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0365,678,375 - 65,705,591 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0357,718,496 - 57,745,749 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl357,718,364 - 57,746,097 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0364,212,933 - 64,240,184 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4353,381,122 - 53,408,375 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1353,277,493 - 53,304,724 (+)NCBI
Celera355,482,564 - 55,509,842 (+)NCBICelera
Cytogenetic Map3q22NCBI
LOC102019452
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554493,368,670 - 3,394,306 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554493,368,976 - 3,394,405 (-)NCBIChiLan1.0ChiLan1.0
LOC100972759
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21374,199,308 - 74,237,028 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B74,214,272 - 74,252,005 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B58,813,554 - 58,849,162 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B176,272,010 - 176,307,618 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B176,272,010 - 176,307,618 (+)Ensemblpanpan1.1panPan2
CYBRD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13615,970,873 - 16,001,296 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3615,970,946 - 15,997,983 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3615,980,919 - 16,011,331 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03616,094,110 - 16,124,607 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3616,094,120 - 16,124,603 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13616,179,767 - 16,210,220 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03616,179,569 - 16,209,953 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03616,281,609 - 16,312,312 (+)NCBIUU_Cfam_GSD_1.0
LOC101976046
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303133,216,918 - 133,245,746 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365091,770,477 - 1,800,619 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365091,770,931 - 1,797,442 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CYBRD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1577,649,040 - 77,695,138 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11577,649,124 - 77,695,141 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21587,033,652 - 87,079,560 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CYBRD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11057,034,961 - 57,063,560 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1057,035,238 - 57,063,682 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040142,482,438 - 142,510,882 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101701182
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247878,937,620 - 8,964,737 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247878,937,521 - 8,965,279 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cybrd1
900 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1558
Count of miRNA genes:658
Interacting mature miRNAs:836
Transcripts:ENSMUST00000028403
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
1559001Eae33_mexperimental allergic encephalomyelitis susceptibility 33 (mouse)Not determined23599167971609412Mouse
11038703Ltpr1_mLeishmania tropica response 1 (mouse)23997166573971811Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240885493114910165Mouse
1301480Pbwg1_mpostnatal body weight growth 1 (mouse)Not determined24182071975820843Mouse
4141069Pbwg1.5_mpostnatal body weight growth 1.5 (mouse)Not determined4352061277520756Mouse
1300788Cia2_mcollagen induced arthritis QTL 2 (mouse)Not determined24352061277520756Mouse
1300671Cia4_mcollagen induced arthritis QTL 4 (mouse)Not determined24352061277520756Mouse
1301402Ap2q_malcohol preference 2 QTL (mouse)Not determined24352061277520756Mouse
1301411Pitm1_mprion incubation time 1 (mouse)Not determined24352061277520756Mouse
10755532Lymph5_mlymphocyte differential 5 (mouse)24419901778199017Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
11532740Pbwg1.10_mpostnatal body weight growth 1.10 (mouse)24813241282132495Mouse
1558820Moo1_mmodifier of Odc1 (mouse)Not determined174826974682269934Mouse
1301747Eae21_mexperimental allergic encephalomyelitis 21 (mouse)Not determined24826974682269934Mouse
1301235Alcw4_malcohol withdrawal 4 (mouse)Not determined24826974682269934Mouse
1300568Hdl1_mhigh density lipoprotein (HDL) level 1 (mouse)Not determined24826974682269934Mouse
10755526Lymph1_mlymphocyte differential 1 (mouse)25081931484819314Mouse
1300875Taste1_mtaste-saccharin preference 1 (mouse)Not determined25092317584923278Mouse
1300761Lgth1_mbody length 1 (mouse)Not determined25170327685703425Mouse
13464141Hbbcq3_mhemoglobin concentration QTL 3 (mouse)25244801986448136Mouse
13463471Hctq6_mhematocrit QTL 6 (mouse)25244801986448136Mouse
4141406Alpq2_malcohol preference QTL 2 (mouse)Not determined25752411791524288Mouse
12738429Lfibq18_mliver fibrosis QTL 18 (mouse)25791999191919991Mouse
1357577Trmq3_mT cell ratio modifier QTL 3 (mouse)Not determined260520612119355518Mouse
13432178Actres2_mactivity response to ethanol/saline 2 (mouse)26069228774092287Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
10044002Hdl7_mHDL level 7 (mouse)Not determined26300595497006113Mouse
10053681Lith24_mlithogenic gene 24 (mouse)Not determined26300595497006113Mouse
1301405Etohr_methanol response acute (mouse)Not determined26300595497006113Mouse
1301703Bomd3_mbone mineral density 3 (mouse)Not determined26300595497006113Mouse
1300662Etohila_methanol induced locomotor activity (mouse)Not determined26300595497006113Mouse
1301048Actre2_mactivity response to ethanol 2 (mouse)Not determined26300595497006113Mouse
1301873Hsl1_mhyperoxia susceptibility locus 1 (mouse)Not determined26357015497570301Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
1301059Hrtfm1_mheart failure modifier 1 (mouse)Not determined26759194074964933Mouse
1301660Iba1_minduction of brown adipocytes 1 (mouse)Not determined267647887101648142Mouse
13463482Mchq17_mmean corpuscular hemoglobin QTL 17 (mouse)267647887101648142Mouse
1301882Etohc2_methanol consumption 2 (mouse)Not determined268724269102724407Mouse
1301948Elsgp3_melevated serum gp70 3 (mouse)Not determined268724269102724407Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000028403   ⟹   ENSMUSP00000028403
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl270,948,267 - 70,973,270 (+)Ensembl
GRCm38.p6 Ensembl271,117,923 - 71,142,926 (+)Ensembl
RefSeq Acc Id: NM_028593   ⟹   NP_082869
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39270,948,398 - 70,973,270 (+)NCBI
GRCm38271,118,054 - 71,142,926 (+)NCBI
MGSCv37270,956,111 - 70,980,983 (+)RGD
Celera272,782,272 - 72,807,772 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_082869   ⟸   NM_028593
- UniProtKB: A2AUU8 (UniProtKB/Swiss-Prot),   Q9D7U1 (UniProtKB/Swiss-Prot),   Q925G2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000028403   ⟸   ENSMUST00000028403
Protein Domains
Cytochrome b561

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q925G2-F1-model_v2 AlphaFold Q925G2 1-290 view protein structure

Promoters
RGD ID:6877556
Promoter ID:EPDNEW_M2229
Type:initiation region
Name:Cybrd1_1
Description:Mus musculus cytochrome b reductase 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38271,118,051 - 71,118,111EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2654575 AgrOrtholog
Ensembl Genes ENSMUSG00000027015 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000028403 ENTREZGENE
  ENSMUST00000028403.3 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.120.1770 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CYB561/CYBRD1-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyt_b561/ferric_Rdtase_TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:73649 UniProtKB/Swiss-Prot
MGD MGI:2654575 ENTREZGENE
NCBI Gene 73649 ENTREZGENE
PANTHER PTHR10106 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10106:SF12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Cytochrom_B561 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cybrd1 PhenoGen
PROSITE CYTOCHROME_B561 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART B561 UniProtKB/Swiss-Prot
UniProt A2AUU8 ENTREZGENE
  B2RVP1_MOUSE UniProtKB/TrEMBL
  CYBR1_MOUSE UniProtKB/Swiss-Prot
  Q8K187_MOUSE UniProtKB/TrEMBL
  Q925G2 ENTREZGENE
  Q9D7U1 ENTREZGENE
UniProt Secondary A2AUU8 UniProtKB/Swiss-Prot
  Q9D7U1 UniProtKB/Swiss-Prot