LOC101701182 (cytochrome b reductase 1) - Rat Genome Database

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Gene: LOC101701182 (cytochrome b reductase 1) Heterocephalus glaber
Analyze
Symbol: LOC101701182 (Ensembl: CYBRD1)
Name: cytochrome b reductase 1
RGD ID: 18902997
Description: ENCODES a protein that exhibits identical protein binding (inferred); metal ion binding (inferred); oxidoreductase activity (inferred); INVOLVED IN response to iron ion (ortholog); PARTICIPATES IN iron uptake pathway; ASSOCIATED WITH COVID-19 (ortholog); genetic disease (ortholog); split hand-foot malformation 5 (ortholog); FOUND IN apical plasma membrane (inferred); brush border membrane (inferred); lysosomal membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CYBRD1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247878,937,620 - 8,964,737 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247878,937,521 - 8,965,279 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
LOC101701182
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247878,937,620 - 8,964,737 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247878,937,521 - 8,965,279 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CYBRD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382171,522,233 - 171,558,129 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2171,522,247 - 171,558,129 (+)EnsemblGRCh38hg38GRCh38
GRCh372172,378,743 - 172,414,639 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362172,087,229 - 172,122,885 (+)NCBINCBI36Build 36hg18NCBI36
Build 342172,204,493 - 172,240,144NCBI
Celera2165,995,455 - 166,031,219 (+)NCBICelera
Cytogenetic Map2q31.1NCBI
HuRef2164,264,213 - 164,300,158 (+)NCBIHuRef
CHM1_12172,385,534 - 172,421,413 (+)NCBICHM1_1
T2T-CHM13v2.02171,999,382 - 172,035,283 (+)NCBIT2T-CHM13v2.0
Cybrd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39270,948,398 - 70,973,270 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl270,948,267 - 70,973,270 (+)EnsemblGRCm39 Ensembl
GRCm38271,118,054 - 71,142,926 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl271,117,923 - 71,142,926 (+)EnsemblGRCm38mm10GRCm38
MGSCv37270,956,111 - 70,980,983 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36270,913,320 - 70,943,769 (+)NCBIMGSCv36mm8
Celera272,782,272 - 72,807,772 (+)NCBICelera
Cytogenetic Map2C2NCBI
cM Map242.38NCBI
Cybrd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8376,342,231 - 76,369,846 (+)NCBIGRCr8
mRatBN7.2355,934,874 - 55,962,132 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl355,934,874 - 55,962,108 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx359,332,726 - 59,359,977 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0367,916,303 - 67,943,578 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0365,678,375 - 65,705,591 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0357,718,496 - 57,745,749 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl357,718,364 - 57,746,097 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0364,212,933 - 64,240,184 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4353,381,122 - 53,408,375 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1353,277,493 - 53,304,724 (+)NCBI
Celera355,482,564 - 55,509,842 (+)NCBICelera
Cytogenetic Map3q22NCBI
LOC102019452
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554493,368,670 - 3,394,306 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554493,368,976 - 3,394,405 (-)NCBIChiLan1.0ChiLan1.0
LOC100972759
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21374,199,308 - 74,237,028 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B74,214,272 - 74,252,005 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B58,813,554 - 58,849,162 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B176,272,010 - 176,307,618 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B176,272,010 - 176,307,618 (+)Ensemblpanpan1.1panPan2
CYBRD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13615,970,873 - 16,001,296 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3615,970,946 - 15,997,983 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3615,980,919 - 16,011,331 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03616,094,110 - 16,124,607 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3616,094,120 - 16,124,603 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13616,179,767 - 16,210,220 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03616,179,569 - 16,209,953 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03616,281,609 - 16,312,312 (+)NCBIUU_Cfam_GSD_1.0
LOC101976046
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303133,216,918 - 133,245,746 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365091,770,477 - 1,800,619 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365091,770,931 - 1,797,442 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CYBRD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1577,649,040 - 77,695,138 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11577,649,124 - 77,695,141 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21587,033,652 - 87,079,560 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CYBRD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11057,034,961 - 57,063,560 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1057,035,238 - 57,063,682 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040142,482,438 - 142,510,882 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000024502   ⟹   ENSHGLP00000024283
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247878,937,620 - 8,964,737 (+)Ensembl
RefSeq Acc Id: XM_004857667   ⟹   XP_004857724
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247878,937,521 - 8,965,279 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004857724 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB10287 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000024283
  ENSHGLP00000029116
GenBank Protein JAO00063 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004857724   ⟸   XM_004857667
- UniProtKB: G5BLX6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000024283   ⟸   ENSHGLT00000024502


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000017312 Ensembl, ENTREZGENE
  ENSHGLG00000034556 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000024502 ENTREZGENE
  ENSHGLT00000089417 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.1770 UniProtKB/TrEMBL
InterPro CYB561/CYBRD1-like UniProtKB/TrEMBL
  Cyt_b561/ferric_Rdtase_TM UniProtKB/TrEMBL
KEGG Report hgl:101701182 UniProtKB/TrEMBL
NCBI Gene LOC101701182 ENTREZGENE
PANTHER PTHR10106 UniProtKB/TrEMBL
  PTHR10106:SF12 UniProtKB/TrEMBL
Pfam Cytochrom_B561 UniProtKB/TrEMBL
PROSITE CYTOCHROME_B561 UniProtKB/TrEMBL
SMART B561 UniProtKB/TrEMBL
UniProt G5BLX6 ENTREZGENE, UniProtKB/TrEMBL