Chml (choroideremia-like) - Rat Genome Database

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Gene: Chml (choroideremia-like) Mus musculus
Analyze
Symbol: Chml
Name: choroideremia-like
RGD ID: 1313261
MGI Page MGI
Description: Predicted to enable small GTPase binding activity. Predicted to be involved in vesicle-mediated transport. Predicted to be located in nucleoplasm. Predicted to be part of Rab-protein geranylgeranyltransferase complex. Predicted to be active in cytosol and nucleus. Is expressed in nervous system. Human ortholog(s) of this gene implicated in asthma. Orthologous to human CHML (CHM like Rab escort protein).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI450814; choroideraemia-like protein; choroideremia-like protein; E030003F13Rik; rab escort protein 2; rab escort protein-2; rab proteins geranylgeranyltransferase component A 2; Re; REP-2; Rep2; RIKEN cDNA E030003F13 gene
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391175,509,803 - 175,520,198 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1175,509,803 - 175,520,467 (-)EnsemblGRCm39 Ensembl
GRCm381175,682,237 - 175,688,353 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1175,682,237 - 175,692,901 (-)EnsemblGRCm38mm10GRCm38
MGSCv371177,612,368 - 177,618,484 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361177,523,163 - 177,525,028 (-)NCBIMGSCv36mm8
Celera1182,767,895 - 182,774,011 (-)NCBICelera
Cytogenetic Map1H3NCBI
cM Map181.7NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Developmental aspects of automatic word processing: language lateralization of early ERP components in children, young adults and middle-aged subjects. Spironelli C and Angrilli A, Biol Psychol. 2009 Jan;80(1):35-45. Epub 2008 Feb 7.
6. Genetic mapping of 20 novel expressed sequence tags from midgestation mouse embryos suggests chromosomal clustering. Tchernev VT, etal., Genomics 1997 Feb 15;40(1):170-4.
Additional References at PubMed
PMID:1301160   PMID:7579897   PMID:9175730   PMID:9226383   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12242008   PMID:12477932   PMID:12506350   PMID:16141072  
PMID:16141073   PMID:21267068   PMID:21873635  


Genomics

Comparative Map Data
Chml
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391175,509,803 - 175,520,198 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1175,509,803 - 175,520,467 (-)EnsemblGRCm39 Ensembl
GRCm381175,682,237 - 175,688,353 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1175,682,237 - 175,692,901 (-)EnsemblGRCm38mm10GRCm38
MGSCv371177,612,368 - 177,618,484 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361177,523,163 - 177,525,028 (-)NCBIMGSCv36mm8
Celera1182,767,895 - 182,774,011 (-)NCBICelera
Cytogenetic Map1H3NCBI
cM Map181.7NCBI
CHML
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381241,628,851 - 241,640,369 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1241,628,851 - 241,640,369 (-)EnsemblGRCh38hg38GRCh38
GRCh371241,792,153 - 241,803,671 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361239,858,789 - 239,865,855 (-)NCBINCBI36Build 36hg18NCBI36
Build 341238,118,203 - 238,125,273NCBI
Celera1215,047,269 - 215,054,335 (-)NCBICelera
Cytogenetic Map1q43NCBI
HuRef1212,250,224 - 212,257,290 (-)NCBIHuRef
CHM1_11243,064,835 - 243,071,901 (-)NCBICHM1_1
T2T-CHM13v2.01241,040,328 - 241,051,843 (-)NCBIT2T-CHM13v2.0
Chml
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81390,141,880 - 90,152,097 (-)NCBIGRCr8
mRatBN7.21387,609,647 - 87,619,868 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1387,589,298 - 87,619,862 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1390,113,464 - 90,115,329 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01391,513,723 - 91,515,588 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01388,692,863 - 88,694,728 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01393,740,759 - 93,742,624 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01398,205,028 - 98,206,893 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41391,420,770 - 91,422,635 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1387,212,029 - 87,213,894 (-)NCBICelera
Cytogenetic Map13q24NCBI
Chml
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540610,455,367 - 10,461,934 (+)NCBIChiLan1.0ChiLan1.0
CHML
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v217,511,348 - 7,518,257 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117,734,966 - 7,741,875 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01217,191,065 - 217,202,578 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11222,171,842 - 222,182,951 (-)NCBIpanpan1.1PanPan1.1panPan2
CHML
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1733,027,051 - 33,040,711 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha732,504,522 - 32,513,774 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0732,853,744 - 32,862,999 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl732,860,224 - 32,867,701 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1732,688,279 - 32,697,533 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0732,712,648 - 32,721,906 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0732,960,620 - 32,969,892 (-)NCBIUU_Cfam_GSD_1.0
Chml
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934445,903,365 - 45,909,195 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365268,833,921 - 8,844,484 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHML
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1011,835,582 - 11,845,804 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11011,835,472 - 11,845,833 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21014,057,719 - 14,062,929 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHML
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12578,712,003 - 78,714,842 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605580,845,319 - 80,848,158 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chml
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477111,981,078 - 11,987,379 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Chml
424 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:61
Count of miRNA genes:56
Interacting mature miRNAs:60
Transcripts:ENSMUST00000104984
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117527730179827565Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128727737181327565Mouse
1301151Hdlq14_mHDL QTL 14 (mouse)Not determined1142489543176489734Mouse
1558720Bpq8_mblood pressure QTL 8 (mouse)Not determined1143284665177284803Mouse
11537365Cnes4_mC. neoformans susceptibility locus 4 (mouse)1144449142178449142Mouse
1300571Opfa_mopen field activity (mouse)Not determined1144531347178531592Mouse
12790996Aath2_maortic arch atherosclerosis 2 (mouse)1145077630179077630Mouse
1300934Cfbw1_mcystic fibrosis body weight 1 (mouse)Not determined1145145207179145325Mouse
1301385Radpf2_mradiation pulmonary fibrosis 2 (mouse)Not determined1147125258182873798Mouse
4141149Hbnr4_mHeligmosomoides bakeri nematode resistance 4 (mouse)Not determined147125258188983224Mouse
12790984Pcho7_mplasma cholesterol 7 (mouse)1147219390181219390Mouse
12791001Aath6_maortic arch atherosclerosis 6 (mouse)1147219390181219390Mouse
1300777Chol10_mcholesterol 10 (mouse)Not determined9147875502181875616Mouse
10043899Hdlq99_mHDL QTL 99 (mouse)Not determined1147875502181875616Mouse
1357618Splq5_mspleen weight QTL 5 (mouse)Not determined1150193673188359312Mouse
1357493Lgaq3_mlate growth adjusted QTL 3 (mouse)Not determined1150193673188359312Mouse
1357485Lgq4_mlate growth QTL 4 (mouse)Not determined1150193673188359312Mouse
4141346Skmw12_mskeletal muscle weight 12 (mouse)Not determined150756737184756922Mouse
1300969Sluc5_msusceptibility to lung cancer 5 (mouse)Not determined1151186243185186402Mouse
4142159Nba2_mNew Zealand Black autoimmunity 2 (mouse)Not determined151835111185835280Mouse
1357889Lprq3_mlipoprotein QTL 3 (mouse)Not determined1152038741186038913Mouse
1301301Sle1_msystemic lupus erythmatosus susceptibility 1 (mouse)Not determined1152038741186038913Mouse
1301025Lbw7_mlupus NZB x NZW 7 (mouse)Not determined1152038741186038913Mouse
1301614Cgnz1_mchronic glomerulonephritis in NZM 1 (mouse)Not determined1152038741186038913Mouse
4141554Cfmq1_mcystic fibrosis modifier QTL 1 (mouse)Not determined1152038741186038913Mouse
13464138Hdlq107_mHDL QTL 107 (mouse)1152132744186132744Mouse
11251722Ewc1_methanol withdrawal and consumption 1 (mouse)1152132744186132744Mouse
10054270Nba10_mNew Zealand Black autoimmunity 10 (mouse)Not determined1152794822186438620Mouse
10412074Nhdlt1_mnon-HDL cholesterol and triglyceride levels 1 (mouse)Not determined1153675990187676105Mouse
10054490Opefa_mopen field activity (mouse)Not determined1153712853187712853Mouse
10043963Obq25_mobesity QTL 25 (mouse)Not determined1154410512188410512Mouse
12904936Edlmmq1_mextensor digitorum longus muscle mass QTL 1 (mouse)1155002940189002940Mouse
12904944Tammq1_mtibialis anterior muscle mass QTL 1 (mouse)1155002940189002940Mouse
12904957Gmmq1_mgastrocnemius muscle mass QTL 1 (mouse)1155002940189002940Mouse
10054271Nba9_mNew Zealand Black autoimmunity 9 (mouse)Not determined1155525623189527533Mouse
4141244Bmd5c_mbone mineral density 5c (mouse)Not determined155526796189526897Mouse
4142182Shali5_msurvival time to hyperoxic acute lung injury 5 (mouse)Not determined155582237185994196Mouse
11081167Tir8_mtrypanosome infection response 8 (mouse)1155716221189716369Mouse
1301619Cafq1_mcaffeine metabolism QTL 1 (mouse)Not determined1155716221189716369Mouse
1301932Ssta2_msusceptibility to Salmonella typhimurium antigens 2 (mouse)Not determined1155716221189716369Mouse
1301866Cplaq3_mcircadian period of locomotor activity 3 (mouse)Not determined1155721528189722608Mouse
1302132Pbw1_mpentobarbital withdrawal QTL 1 (mouse)Not determined1155831765189831892Mouse
4141165Bglu3_mblood glucose level 3 (mouse)Not determined155831765189831892Mouse
10766456Sle21_msystematic lupus erythematosus susceptibility 21 (mouse)1155831765189831892Mouse
1301122Cd8mts1_mCD8 T memory cell subset 1 (mouse)Not determined1155831765189831892Mouse
12910521Scgq1_mspontaneous crescentic glomerulonephritis QTL 1 (mouse)1156602037176262693Mouse
1301189Lmr8_mleishmaniasis resistance 8 (mouse)Not determined1156602037189303617Mouse
1301134Bmd1_mbone mineral density 1 (mouse)Not determined1156602037189303617Mouse
1301602Bslm4_mbasal locomotor activity 4 (mouse)Not determined1157456299191456436Mouse
1300732Melm2_mmelanoma modifier 2 (mouse)Not determined1157456299191456436Mouse
1301216Cbm1_mcerebellum weight 1 (mouse)Not determined1157456299191456436Mouse
1300948Fglu2_mfasting glucose 2 (mouse)Not determined1157456299191456436Mouse
1301565Mnotch_mmodifier of Notch (mouse)Not determined1157456299191456436Mouse
4141245Cq2_mcholesterol QTL 2 (mouse)Not determined1157456299191456436Mouse
1300745Gvhd1_mgraft-versus-host disease 1 (mouse)Not determined1157456299191456436Mouse
1301202Yaa4_mY-linked autoimmune acceleration 4 (mouse)Not determined1158468817192468938Mouse
1300842Sle9_msystematic lupus erythematosus susceptibility 9 (mouse)Not determined1158468817192468938Mouse
11059558Lmr20c_mleishmaniasis resistance 20c (mouse)1158468817192468938Mouse
11059557Lmr20a_mleishmaniasis resistance 20a (mouse)1158468817192468938Mouse
11059556Lmr20b_mleishmaniasis resistance 20b (mouse)1158468817192468938Mouse
10402498Lmr20_mleishmaniasis resistance 20 (mouse)Not determined1158468817192468938Mouse
1301431Pcho1_mplasma cholesterol 1 (mouse)Not determined1159262573193262693Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160097157194097157Mouse
12790988Phdlc5_mplasma HDL cholesterol 5 (mouse)9160097157194097157Mouse
1300823Ath9_matherosclerosis 9 (mouse)Not determined1160112768194112883Mouse
1301632Bw8q1_mbody weight at 8 weeks QTL 1 (mouse)Not determined1161201261195154279Mouse
1301596Elnt_mescape latencies during navigation task (mouse)Not determined1162145207194111528Mouse
1301309Emo1_memotionality 1 (mouse)Not determined1162977097185994196Mouse
1300888Berr1_mberghei resistance locus 1 (mouse)Not determined1164143227190534272Mouse
1301339Hdlq15_mHDL QTL 15 (mouse)Not determined1165873675195154279Mouse
1302158Fembrs5_mfemur breaking strength 5 (mouse)Not determined1167462514195154279Mouse
1559024Zit1_mzinc induced tolerance 1 (mouse)Not determined1167462514195154279Mouse
4141483Femwf7_mfemur work to failure 7 (mouse)Not determined167462514195154279Mouse
12792983Liq1_mlimb inflammation QTL 1 (mouse)1167586086191225397Mouse
1301333Mop3_mmorphine preference 3 (mouse)Not determined1167756737189303617Mouse
1558802Skmw6_mskeletal muscle weight 6 (mouse)Not determined1167954584195154279Mouse
1301251Scc3_mcolon tumor susceptibility 3 (mouse)Not determined1168213823195154279Mouse
1357854Sle16_msystematic lupus erythematosus susceptibility 16 (mouse)Not determined1169038741177377587Mouse
13207571Tcq11_mtotal cholesterol QTL 11 (mouse)1169137569179647565Mouse
1301132Mors1_mmodifier of obesity related sterility 1 (mouse)Not determined1170379500195154279Mouse
4142389Scfr1_mstem cell frequency regulator 1 (mouse)Not determined171632048189303617Mouse
1300727Mptp1_mMPTP sensitivity 1 (mouse)Not determined1171632048192681050Mouse
1357732Tbbmd1_mtotal body bone mineral density 1 (mouse)Not determined1171983110195154279Mouse
11049575Lmr8b_mleishmaniasis resistance 8b (mouse)1172303451195154279Mouse
1301652Cpfd2_mcerebellum pattern fissures (mouse)Not determined1172303451195154279Mouse
10043863Swrl5_mSWR lupus locus 5 (mouse)Not determined1172303451195154279Mouse
12880426V25Dq2_mvitamin D inactive form serum level QTL 2 (mouse)1172532197195154279Mouse
12880429V25Dq1_mvitamin D inactive form serum level QTL 1 (mouse)1172632197195154279Mouse
10045887Cplaq13_mcircadian period of locomotor activity 13 (mouse)Not determined1172831765181400659Mouse
1302023Orch4_mautoimmune orchitis resistance 4 (mouse)Not determined1175211318195154279Mouse
1300960Hpic2_mhaloperidol induced catalepsy 2 (mouse)Not determined1175468817181400659Mouse
11532690Sluc37_msusceptibility to lung cancer 37 (mouse)1175468817194111528Mouse

Markers in Region
AI450814  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381175,682,372 - 175,682,517UniSTSGRCm38
MGSCv371177,612,503 - 177,612,648UniSTSGRCm37
Celera1182,768,030 - 182,768,175UniSTS
Cytogenetic Map1H5-H6UniSTS
Cytogenetic Map1H3UniSTS
Whitehead/MRC_RH12199.4UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000104984   ⟹   ENSMUSP00000100600
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1175,509,803 - 175,520,196 (-)Ensembl
GRCm38.p6 Ensembl1175,682,237 - 175,692,630 (-)Ensembl
RefSeq Acc Id: ENSMUST00000209720   ⟹   ENSMUSP00000148253
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1175,509,803 - 175,520,196 (-)Ensembl
GRCm38.p6 Ensembl1175,682,237 - 175,692,630 (-)Ensembl
RefSeq Acc Id: ENSMUST00000210367   ⟹   ENSMUSP00000147761
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1175,513,922 - 175,520,467 (-)Ensembl
GRCm38.p6 Ensembl1175,686,356 - 175,692,901 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211207   ⟹   ENSMUSP00000147889
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1175,514,054 - 175,515,919 (-)Ensembl
GRCm38.p6 Ensembl1175,686,488 - 175,688,353 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211489   ⟹   ENSMUSP00000147362
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1175,514,893 - 175,520,196 (-)Ensembl
GRCm38.p6 Ensembl1175,687,327 - 175,692,630 (-)Ensembl
RefSeq Acc Id: NM_021350   ⟹   NP_067325
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391175,509,803 - 175,520,198 (-)NCBI
GRCm381175,682,237 - 175,688,353 (-)ENTREZGENE
MGSCv371177,612,368 - 177,618,484 (-)RGD
Celera1182,767,895 - 182,774,011 (-)RGD
cM Map1 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_067325   ⟸   NM_021350
- UniProtKB: Q8CH16 (UniProtKB/Swiss-Prot),   Q0VF88 (UniProtKB/Swiss-Prot),   Q9QZD5 (UniProtKB/Swiss-Prot),   A0A0R4J1A1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000100600   ⟸   ENSMUST00000104984
RefSeq Acc Id: ENSMUSP00000147889   ⟸   ENSMUST00000211207
RefSeq Acc Id: ENSMUSP00000147362   ⟸   ENSMUST00000211489
RefSeq Acc Id: ENSMUSP00000147761   ⟸   ENSMUST00000210367
RefSeq Acc Id: ENSMUSP00000148253   ⟸   ENSMUST00000209720
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9QZD5-F1-model_v2 AlphaFold Q9QZD5 1-621 view protein structure

Promoters
RGD ID:6817513
Promoter ID:MM_KWN:3015
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:NM_021350
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361177,618,111 - 177,618,611 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:101913 AgrOrtholog
Ensembl Genes ENSMUSG00000078185 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000104984 ENTREZGENE
  ENSMUST00000104984.4 UniProtKB/TrEMBL
  ENSMUST00000209720.2 UniProtKB/TrEMBL
  ENSMUST00000210367.2 UniProtKB/TrEMBL
  ENSMUST00000211207.2 UniProtKB/TrEMBL
  ENSMUST00000211489.2 UniProtKB/TrEMBL
Gene3D-CATH 3.50.50.60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Guanine Nucleotide Dissociation Inhibitor, domain 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Guanine Nucleotide Dissociation Inhibitor, domain 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro FAD/NAD-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GDP_dissociation_inhibitor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Rab_escort UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12663 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:101913 ENTREZGENE
NCBI Gene 12663 ENTREZGENE
PANTHER OPSIN UniProtKB/TrEMBL
  OPSIN-3 UniProtKB/TrEMBL
  PTHR11787 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAB PROTEINS GERANYLGERANYLTRANSFERASE COMPONENT A 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
  GDI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Chml PhenoGen
PIRSF Rab_ger_ger_transf_A_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  RABESCORT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RABGDIREP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP FAD-linked reductases, C-terminal domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Family A G protein-coupled receptor-like UniProtKB/TrEMBL
  SSF51905 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0R4J1A1 ENTREZGENE, UniProtKB/TrEMBL
  A0A1B0GR39_MOUSE UniProtKB/TrEMBL
  A0A1B0GS21_MOUSE UniProtKB/TrEMBL
  A0A1B0GT93_MOUSE UniProtKB/TrEMBL
  Q0VF88 ENTREZGENE
  Q8CH16 ENTREZGENE
  Q9QZD5 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q0VF88 UniProtKB/Swiss-Prot
  Q8CH16 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Chml  choroideremia-like  E030003F13Rik  RIKEN cDNA E030003F13 gene  Data merged from RGD:1609582 737654 PROVISIONAL