Rabgap1 (RAB GTPase activating protein 1) - Rat Genome Database

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Gene: Rabgap1 (RAB GTPase activating protein 1) Mus musculus
Analyze
Symbol: Rabgap1
Name: RAB GTPase activating protein 1
RGD ID: 1312284
MGI Page MGI
Description: Predicted to enable GTPase activator activity and small GTPase binding activity. Predicted to be located in cytosol. Orthologous to human RABGAP1 (RAB GTPase activating protein 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Gap; GAP and centrosome-associated protein; Gapcena; KIAA4104; MGC30493; mKIAA4104; rab GTPase-activating protein 1; rab6 GTPase activating protein (GAP and centrosome-associated); rab6 GTPase-activating protein GAPCenA
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39237,333,274 - 37,463,653 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl237,333,291 - 37,456,466 (+)EnsemblGRCm39 Ensembl
GRCm38237,443,263 - 37,573,420 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl237,443,279 - 37,566,454 (+)EnsemblGRCm38mm10GRCm38
MGSCv37237,298,805 - 37,421,957 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36237,265,294 - 37,388,446 (+)NCBIMGSCv36mm8
Celera237,127,293 - 37,251,801 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map224.19NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytoskeleton  (IEA)
cytosol  (ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:16141072   PMID:16141073  
PMID:17967808   PMID:18799693   PMID:21267068   PMID:21873635   PMID:27707753   PMID:32325033   PMID:32554809   PMID:32843574   PMID:35449600   PMID:36083289   PMID:36417873  


Genomics

Comparative Map Data
Rabgap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39237,333,274 - 37,463,653 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl237,333,291 - 37,456,466 (+)EnsemblGRCm39 Ensembl
GRCm38237,443,263 - 37,573,420 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl237,443,279 - 37,566,454 (+)EnsemblGRCm38mm10GRCm38
MGSCv37237,298,805 - 37,421,957 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36237,265,294 - 37,388,446 (+)NCBIMGSCv36mm8
Celera237,127,293 - 37,251,801 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map224.19NCBI
RABGAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389122,931,671 - 123,104,866 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9122,940,833 - 123,104,866 (+)EnsemblGRCh38hg38GRCh38
GRCh379125,703,299 - 125,867,145 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369124,743,138 - 124,906,531 (+)NCBINCBI36Build 36hg18NCBI36
Build 349122,782,870 - 122,946,250NCBI
Celera996,351,607 - 96,515,424 (+)NCBICelera
Cytogenetic Map9q33.2-q33.3NCBI
HuRef995,318,127 - 95,482,201 (+)NCBIHuRef
CHM1_19125,851,805 - 126,015,462 (+)NCBICHM1_1
T2T-CHM13v2.09135,128,522 - 135,302,077 (+)NCBIT2T-CHM13v2.0
Rabgap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8341,617,784 - 41,735,795 (+)NCBIGRCr8
mRatBN7.2321,208,012 - 21,326,013 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl321,208,055 - 21,326,013 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx324,676,385 - 24,794,460 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0333,261,349 - 33,379,418 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0331,072,090 - 31,190,304 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0321,698,032 - 21,815,383 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl321,698,032 - 21,815,379 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0326,937,207 - 27,053,945 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4317,204,810 - 17,322,894 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1317,125,169 - 17,217,685 (+)NCBI
Celera319,643,578 - 19,761,555 (+)NCBICelera
Cytogenetic Map3q11NCBI
Rabgap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554194,869,799 - 5,023,321 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554194,869,799 - 5,031,430 (-)NCBIChiLan1.0ChiLan1.0
RABGAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21116,244,231 - 16,410,384 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1916,246,579 - 16,412,777 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0994,066,218 - 94,232,659 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19122,399,778 - 122,565,906 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9122,415,882 - 122,564,283 (+)Ensemblpanpan1.1panPan2
RABGAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1959,692,621 - 59,860,392 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl959,694,098 - 59,836,532 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha958,887,930 - 59,055,537 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0960,613,022 - 60,779,721 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl960,614,598 - 60,779,703 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1959,371,070 - 59,538,494 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0959,686,097 - 59,853,500 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0959,778,987 - 59,946,247 (-)NCBIUU_Cfam_GSD_1.0
Rabgap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947191,645,998 - 191,806,955 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648711,414,463 - 11,575,471 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648711,414,454 - 11,575,423 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RABGAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1263,857,513 - 264,030,574 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11263,857,501 - 264,030,575 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21297,320,617 - 297,478,637 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RABGAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11215,028,205 - 15,198,953 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1215,028,203 - 15,177,626 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666079865,318 - 1,040,790 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rabgap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476011,818,408 - 12,004,005 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476011,818,349 - 12,003,955 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rabgap1
2278 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2216
Count of miRNA genes:745
Interacting mature miRNAs:979
Transcripts:ENSMUST00000061179, ENSMUST00000066055, ENSMUST00000112920, ENSMUST00000130601, ENSMUST00000133434, ENSMUST00000148470, ENSMUST00000153145, ENSMUST00000159092
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2767911541679261Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2823629642236396Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2830805142308240Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2938444643384575Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2938444643384575Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21421456748214713Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22112972555129871Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2112972555129871Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22368914557689269Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22459001254890012Mouse
12792980Fbmd1_mfemoral bone mineral density 1, females only (mouse)22503449245034492Mouse
4142130Pgis2_mproteoglycan induced spondylitis 2 (mouse)Not determined22530805156971811Mouse
12904005Cfq2_mconditioned fear QTL 2 (mouse)22702264256396228Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse
14746979Manh51_mmandible shape 51 (mouse)22896112962961129Mouse
14746997Mancz2_mmandible centroid size 2 (mouse)22896112962961129Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
12904008Cfq6_mconditioned fear QTL 6 (mouse)23120303544508204Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
13464253Ifvrq1_minfluenza virus resistance QTL 1 (mouse)23303449252034492Mouse
4142447Pbwg1.7_mpostnatal body weight growth 1.7 (mouse)Not determined3579732469797406Mouse
4141186Pbwg1.8_mpostnatal body weight growth 1.8 (mouse)Not determined3579732469797406Mouse
4142133Pbwg1.6_mpostnatal body weight growth 1.6 (mouse)Not determined3579732469797406Mouse
1559001Eae33_mexperimental allergic encephalomyelitis susceptibility 33 (mouse)Not determined23599167971609412Mouse

Markers in Region
X84692  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38237,483,470 - 37,483,663UniSTSGRCm38
MGSCv37237,338,990 - 37,339,183UniSTSGRCm37
Celera237,168,815 - 37,169,008UniSTS
Cytogenetic Map2BUniSTS
Whitehead_YAC2 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001033960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_146121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_156419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK021286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL953890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX545905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY021872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000061179   ⟹   ENSMUSP00000061624
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl237,333,297 - 37,456,449 (+)Ensembl
GRCm38.p6 Ensembl237,443,285 - 37,566,437 (+)Ensembl
RefSeq Acc Id: ENSMUST00000066055   ⟹   ENSMUSP00000068835
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl237,342,257 - 37,434,974 (+)Ensembl
GRCm38.p6 Ensembl237,452,245 - 37,544,962 (+)Ensembl
RefSeq Acc Id: ENSMUST00000112920   ⟹   ENSMUSP00000108542
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl237,342,279 - 37,456,466 (+)Ensembl
GRCm38.p6 Ensembl237,452,267 - 37,566,454 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130601
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl237,381,943 - 37,399,150 (+)Ensembl
GRCm38.p6 Ensembl237,491,931 - 37,509,138 (+)Ensembl
RefSeq Acc Id: ENSMUST00000133434   ⟹   ENSMUSP00000121963
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl237,333,291 - 37,385,601 (+)Ensembl
GRCm38.p6 Ensembl237,443,279 - 37,495,589 (+)Ensembl
RefSeq Acc Id: ENSMUST00000148470   ⟹   ENSMUSP00000119831
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl237,342,257 - 37,365,375 (+)Ensembl
GRCm38.p6 Ensembl237,452,245 - 37,475,363 (+)Ensembl
RefSeq Acc Id: ENSMUST00000153145
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl237,333,308 - 37,378,178 (+)Ensembl
GRCm38.p6 Ensembl237,443,296 - 37,488,166 (+)Ensembl
RefSeq Acc Id: ENSMUST00000159092
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl237,406,531 - 37,455,065 (+)Ensembl
GRCm38.p6 Ensembl237,516,519 - 37,565,053 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203470
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl237,341,648 - 37,343,800 (+)Ensembl
GRCm38.p6 Ensembl237,451,636 - 37,453,788 (+)Ensembl
RefSeq Acc Id: ENSMUST00000205186
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl237,380,877 - 37,383,958 (+)Ensembl
GRCm38.p6 Ensembl237,490,865 - 37,493,946 (+)Ensembl
RefSeq Acc Id: NM_001033960   ⟹   NP_001029132
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,342,266 - 37,434,974 (+)NCBI
GRCm38237,452,254 - 37,544,962 (+)NCBI
MGSCv37237,298,805 - 37,421,957 (+)RGD
Celera237,127,293 - 37,251,801 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001362956   ⟹   NP_001349885
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,342,266 - 37,456,449 (+)NCBI
GRCm38237,452,254 - 37,566,437 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001362957   ⟹   NP_001349886
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,333,297 - 37,434,974 (+)NCBI
GRCm38237,443,285 - 37,544,962 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001362958   ⟹   NP_001349887
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,342,266 - 37,456,449 (+)NCBI
GRCm38237,452,254 - 37,566,437 (+)NCBI
Sequence:
RefSeq Acc Id: NM_146121   ⟹   NP_666233
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,333,297 - 37,456,449 (+)NCBI
GRCm38237,443,285 - 37,566,437 (+)NCBI
MGSCv37237,298,805 - 37,421,957 (+)RGD
Celera237,127,293 - 37,251,801 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_156419
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,333,297 - 37,456,449 (+)NCBI
GRCm38237,443,285 - 37,566,437 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006497995   ⟹   XP_006498058
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,333,288 - 37,463,653 (+)NCBI
GRCm38237,443,276 - 37,573,420 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006497997   ⟹   XP_006498060
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,333,274 - 37,445,095 (+)NCBI
GRCm38237,443,263 - 37,555,083 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250053   ⟹   XP_030105913
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,342,137 - 37,438,350 (+)NCBI
GRCm38237,452,125 - 37,548,338 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_666233   ⟸   NM_146121
- Peptide Label: isoform a
- UniProtKB: Q8CD74 (UniProtKB/Swiss-Prot),   Q8C8W3 (UniProtKB/Swiss-Prot),   Q8BQ32 (UniProtKB/Swiss-Prot),   Q5DTN1 (UniProtKB/Swiss-Prot),   Q8R312 (UniProtKB/Swiss-Prot),   A2AWA9 (UniProtKB/Swiss-Prot),   B2RRC5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001029132   ⟸   NM_001033960
- Peptide Label: isoform b
- UniProtKB: A2AWA9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006498060   ⟸   XM_006497997
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006498058   ⟸   XM_006497995
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001349886   ⟸   NM_001362957
- Peptide Label: isoform b
RefSeq Acc Id: XP_030105913   ⟸   XM_030250053
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001349885   ⟸   NM_001362956
- Peptide Label: isoform a
- UniProtKB: Q8CD74 (UniProtKB/Swiss-Prot),   Q8C8W3 (UniProtKB/Swiss-Prot),   Q8BQ32 (UniProtKB/Swiss-Prot),   Q5DTN1 (UniProtKB/Swiss-Prot),   A2AWA9 (UniProtKB/Swiss-Prot),   Q8R312 (UniProtKB/Swiss-Prot),   B2RRC5 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001349887   ⟸   NM_001362958
- Peptide Label: isoform c
RefSeq Acc Id: ENSMUSP00000068835   ⟸   ENSMUST00000066055
RefSeq Acc Id: ENSMUSP00000121963   ⟸   ENSMUST00000133434
RefSeq Acc Id: ENSMUSP00000108542   ⟸   ENSMUST00000112920
RefSeq Acc Id: ENSMUSP00000119831   ⟸   ENSMUST00000148470
RefSeq Acc Id: ENSMUSP00000061624   ⟸   ENSMUST00000061179
Protein Domains
PID   Rab-GAP TBC

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A2AWA9-F1-model_v2 AlphaFold A2AWA9 1-1064 view protein structure

Promoters
RGD ID:6833117
Promoter ID:MM_KWN:28983
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000112919,   ENSMUST00000112932,   NM_146121,   NM_199025,   OTTMUST00000030112,   UC008JMU.1,   UC008JMW.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36237,298,141 - 37,298,952 (-)MPROMDB
RGD ID:6832242
Promoter ID:MM_KWN:28984
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000112920,   OTTMUST00000030110,   OTTMUST00000030114
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36237,307,449 - 37,307,949 (+)MPROMDB
RGD ID:6877182
Promoter ID:EPDNEW_M2042
Type:initiation region
Name:Rabgap1_1
Description:Mus musculus RAB GTPase activating protein 1 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2043  EPDNEW_M2044  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38237,443,290 - 37,443,350EPDNEW
RGD ID:6877184
Promoter ID:EPDNEW_M2043
Type:single initiation site
Name:Rabgap1_3
Description:Mus musculus RAB GTPase activating protein 1 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2042  EPDNEW_M2044  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38237,450,967 - 37,451,027EPDNEW
RGD ID:6877186
Promoter ID:EPDNEW_M2044
Type:initiation region
Name:Rabgap1_2
Description:Mus musculus RAB GTPase activating protein 1 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2042  EPDNEW_M2043  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38237,452,246 - 37,452,306EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2385139 AgrOrtholog
Ensembl Genes ENSMUSG00000035437 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000061179 ENTREZGENE
  ENSMUST00000061179.12 UniProtKB/Swiss-Prot
  ENSMUST00000066055 ENTREZGENE
  ENSMUST00000066055.10 UniProtKB/Swiss-Prot
  ENSMUST00000112920 ENTREZGENE
  ENSMUST00000112920.2 UniProtKB/Swiss-Prot
  ENSMUST00000133434.8 UniProtKB/TrEMBL
  ENSMUST00000148470.8 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  putative rabgap domain of human tbc1 domain family member 14 like domains UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ypt/Rab-GAP domain of gyp1p, domain 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ypt/Rab-GAP domain of gyp1p, domain 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Kinesin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTB/PI_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rab-GTPase-TBC_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rab-GTPase_TBC_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:227800 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2385139 ENTREZGENE
NCBI Gene 227800 ENTREZGENE
PANTHER RAB GTPASE-ACTIVATING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAB GTPASE-ACTIVATING PROTEIN 1-LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF3694 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PID UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RabGAP-TBC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rabgap1 PhenoGen
PROSITE PID UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TBC_RABGAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PTB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TBC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF47923 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AWA7_MOUSE UniProtKB/TrEMBL
  A2AWA9 ENTREZGENE
  A2AWB0_MOUSE UniProtKB/TrEMBL
  B2RRC5 ENTREZGENE, UniProtKB/TrEMBL
  Q5DTN1 ENTREZGENE
  Q8BQ32 ENTREZGENE
  Q8C8W3 ENTREZGENE
  Q8CD74 ENTREZGENE
  Q8R312 ENTREZGENE
  RBGP1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q5DTN1 UniProtKB/Swiss-Prot
  Q8BQ32 UniProtKB/Swiss-Prot
  Q8C8W3 UniProtKB/Swiss-Prot
  Q8CD74 UniProtKB/Swiss-Prot
  Q8R312 UniProtKB/Swiss-Prot