Wnt6 (wingless-type MMTV integration site family, member 6) - Rat Genome Database

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Gene: Wnt6 (wingless-type MMTV integration site family, member 6) Mus musculus
Analyze
Symbol: Wnt6
Name: wingless-type MMTV integration site family, member 6
RGD ID: 1312068
MGI Page MGI
Description: Predicted to enable cytokine activity and frizzled binding activity. Acts upstream of or within several processes, including epithelial-mesenchymal cell signaling; nephron tubule morphogenesis; and positive regulation of macromolecule biosynthetic process. Located in cell surface and extracellular matrix. Is expressed in several structures, including alimentary system; genitourinary system; limb; nervous system; and sensory organ. Orthologous to human WNT6 (Wnt family member 6).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AA409270; wingless-related MMTV integration site 6; Wnt-; Wnt-6
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39174,793,499 - 74,824,481 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl174,811,051 - 74,824,481 (+)EnsemblGRCm39 Ensembl
GRCm38174,754,342 - 74,785,322 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl174,771,892 - 74,785,322 (+)EnsemblGRCm38mm10GRCm38
MGSCv37174,818,466 - 74,831,893 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36174,705,165 - 74,718,155 (+)NCBIMGSCv36mm8
Celera175,326,979 - 75,340,389 (+)NCBICelera
Cytogenetic Map1C4NCBI
cM Map138.54NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Adenomyoepitheliomatous lesions of the mammary glands in transgenic mice with targeted PLAG1 overexpression. Declercq J, etal., Int J Cancer. 2008 Jul 22.
2. Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Ko MS, etal., Hum Mol Genet 1998 Nov;7(12):1967-78.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. The Wnt Homepage Roel Nusse - Howard Hughes Medical Institute and the Department of Developmental Biology at Stanford University, California, USA
10. Transformation by Wnt family proteins correlates with regulation of beta-catenin. Shimizu H, etal., Cell Growth Differ. 1997 Dec;8(12):1349-58.
11. The evolutionarily conserved porcupine gene family is involved in the processing of the Wnt family. Tanaka K, etal., Eur J Biochem 2000 Jul;267(13):4300-11.
12. Alternative wnt signaling is initiated by distinct receptors. van Amerongen R, etal., Sci Signal. 2008 Sep 2;1(35):re9.
13. Differential transformation of mammary epithelial cells by Wnt genes. Wong GT, etal., Mol Cell Biol. 1994 Sep;14(9):6278-86.
Additional References at PubMed
PMID:1373817   PMID:1846319   PMID:2279700   PMID:7556445   PMID:7958454   PMID:7988795   PMID:8058323   PMID:8167409   PMID:8275860   PMID:8575294   PMID:9356179   PMID:9811581  
PMID:9889131   PMID:9989404   PMID:10349636   PMID:10415363   PMID:10585256   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11429295   PMID:11455436   PMID:11520664  
PMID:11543617   PMID:11735226   PMID:11914369   PMID:11948913   PMID:11973284   PMID:12015971   PMID:12203726   PMID:12477932   PMID:12591596   PMID:12815618   PMID:12819125   PMID:14651926  
PMID:14681479   PMID:14745960   PMID:15044261   PMID:15196961   PMID:15226823   PMID:15342465   PMID:15691760   PMID:15778975   PMID:15880404   PMID:16141072   PMID:16141073   PMID:16423343  
PMID:16524929   PMID:16678101   PMID:16806848   PMID:17015430   PMID:17055474   PMID:17064353   PMID:17196193   PMID:17804636   PMID:17943183   PMID:18160257   PMID:18351662   PMID:18351675  
PMID:18364260   PMID:18495817   PMID:18600225   PMID:18635608   PMID:18697834   PMID:18703040   PMID:18800919   PMID:18991257   PMID:19185060   PMID:19282366   PMID:19515997   PMID:19521500  
PMID:19562671   PMID:19619491   PMID:19767821   PMID:19806668   PMID:19815519   PMID:19850029   PMID:20083111   PMID:20171206   PMID:20940229   PMID:21041481   PMID:21267068   PMID:21531785  
PMID:21623369   PMID:21731673   PMID:21872687   PMID:21873635   PMID:21936019   PMID:22024319   PMID:22166339   PMID:22234613   PMID:22365545   PMID:22370641   PMID:22607194   PMID:22677559  
PMID:22866057   PMID:22956684   PMID:23041177   PMID:23175771   PMID:23190887   PMID:23376422   PMID:23676498   PMID:23884445   PMID:24123681   PMID:24151333   PMID:24394376   PMID:24586192  
PMID:24859004   PMID:24952961   PMID:25428587   PMID:25959774   PMID:26071893   PMID:26243870   PMID:26288816   PMID:26443994   PMID:26459221   PMID:26661618   PMID:26929341   PMID:27122540  
PMID:27131881   PMID:27362799   PMID:27626380   PMID:28009287   PMID:28177772   PMID:28813421   PMID:29031500   PMID:30110641   PMID:30228991   PMID:30347193   PMID:30728831   PMID:30940800  
PMID:31167144   PMID:31226309   PMID:31338035   PMID:31351040   PMID:31604927   PMID:31618077   PMID:31647919   PMID:31974426   PMID:32634398   PMID:32759216   PMID:32855415   PMID:32907846  
PMID:33141892   PMID:34255743   PMID:34478025   PMID:34686698   PMID:35831952   PMID:36305473   PMID:37039821   PMID:37838801  


Genomics

Comparative Map Data
Wnt6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39174,793,499 - 74,824,481 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl174,811,051 - 74,824,481 (+)EnsemblGRCm39 Ensembl
GRCm38174,754,342 - 74,785,322 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl174,771,892 - 74,785,322 (+)EnsemblGRCm38mm10GRCm38
MGSCv37174,818,466 - 74,831,893 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36174,705,165 - 74,718,155 (+)NCBIMGSCv36mm8
Celera175,326,979 - 75,340,389 (+)NCBICelera
Cytogenetic Map1C4NCBI
cM Map138.54NCBI
WNT6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382218,859,805 - 218,874,233 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2218,859,805 - 218,874,233 (+)EnsemblGRCh38hg38GRCh38
GRCh372219,724,528 - 219,738,955 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362219,432,790 - 219,447,198 (+)NCBINCBI36Build 36hg18NCBI36
Build 342219,550,050 - 219,564,459NCBI
Celera2213,494,308 - 213,508,717 (+)NCBICelera
Cytogenetic Map2q35NCBI
HuRef2211,579,073 - 211,593,483 (+)NCBIHuRef
CHM1_12219,731,923 - 219,746,333 (+)NCBICHM1_1
T2T-CHM13v2.02219,348,208 - 219,362,636 (+)NCBIT2T-CHM13v2.0
Wnt6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8983,778,552 - 83,792,186 (+)NCBIGRCr8
mRatBN7.2976,329,882 - 76,343,523 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl976,329,882 - 76,343,523 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx984,775,108 - 84,788,700 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0989,904,052 - 89,917,640 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0988,290,221 - 88,303,815 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0982,033,543 - 82,047,172 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl982,033,543 - 82,047,166 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0981,796,069 - 81,809,700 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4974,104,364 - 74,117,995 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1974,260,929 - 74,264,251 (+)NCBI
Celera973,902,364 - 73,915,999 (+)NCBICelera
Cytogenetic Map9q33NCBI
Wnt6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545314,545,700 - 14,560,976 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545314,547,427 - 14,560,001 (-)NCBIChiLan1.0ChiLan1.0
WNT6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213121,492,605 - 121,507,593 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B121,507,573 - 121,522,558 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B106,119,740 - 106,134,317 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B224,714,217 - 224,728,557 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B224,714,229 - 224,728,171 (+)Ensemblpanpan1.1panPan2
WNT6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13725,452,875 - 25,457,437 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3725,453,905 - 25,456,654 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3726,264,174 - 26,277,672 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03725,459,418 - 25,472,890 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3725,459,276 - 25,472,463 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13725,364,055 - 25,377,524 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03725,298,852 - 25,312,297 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03725,319,631 - 25,333,316 (+)NCBIUU_Cfam_GSD_1.0
Wnt6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303174,947,277 - 174,959,904 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365691,290,052 - 1,302,691 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365691,290,061 - 1,302,672 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WNT6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15120,901,376 - 120,917,486 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115120,901,471 - 120,917,359 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
WNT6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110104,759,794 - 104,775,642 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10104,760,045 - 104,774,487 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604094,626,733 - 94,641,426 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wnt6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248236,145,545 - 6,150,181 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248236,145,836 - 6,150,133 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Wnt6
911 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:269
Count of miRNA genes:219
Interacting mature miRNAs:243
Transcripts:ENSMUST00000006716
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
1301166Thypr2_mthymocyte proliferative response 2 (mouse)Not determined14127312475273271Mouse
18182931Metl1_mmetabolite locus 1, pyridoxate (mouse)14127539975275399Mouse
4141032Wbcc1_mwhite blood cell count 1 (mouse)Not determined4225966776259667Mouse
1301714Vertcling_mvertical clinging (mouse)Not determined14293803176938167Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1301670Ssta1_msusceptibility to Salmonella typhimurium antigens 1 (mouse)Not determined14594675579946882Mouse
1301616Yaa2_mY-linked autoimmune acceleration 2 (mouse)Not determined14685469080854839Mouse
1301225Sle7_msystematic lupus erythematosus susceptibility 7 (mouse)Not determined14685469080854839Mouse
1558905Gct7_mgranulosa cell tumorigenesis 7 (mouse)Not determined14734989481350013Mouse
1558822Vas1_mautoimmune vasitis resistance 1 (mouse)Not determined14888900682889210Mouse
1301211Bbaa11_mB.burgdorferi-associated arthritis 11 (mouse)Not determined14888900682889210Mouse
1301430Cdcs2_mcytokine deficiency colitis susceptibility 2 (mouse)Not determined14889234582892485Mouse
10043965Obq24_mobesity QTL 24 (mouse)Not determined15089021684890216Mouse
4141305Tgq9_mtriglyceride QTL 9 (mouse)Not determined5142160585421605Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1357741Nidd5k_mNidd5 on KK-A<y> (mouse)Not determined15597494889975057Mouse
4142467Wbcq1_mwhite blood cell quantitative locus 1 (mouse)Not determined15626621490266360Mouse
1357505Vtbt1_mvertebral trabecular bone trait 1 (mouse)Not determined15626621490266360Mouse
1558717Ses1a_msalmonella enteritidis susceptibility 1a (mouse)Not determined15672692290727077Mouse
1301933Insq6_minsulin QTL 6 (mouse)Not determined15672692290727077Mouse
14746998Mancz1_mmandible centroid size 1 (mouse)15794135191941351Mouse
14747009Manh49_mmandible shape 49 (mouse)15794135191941351Mouse
1300746Skl1_mskeletal size (tail length) 1 (mouse)Not determined15799197791992080Mouse
1357679Egrm1_mearly growth rate, maternal effect 1 (mouse)Not determined15799197791992080Mouse
1301162Skull1_mskull morphology 1 (mouse)Not determined15799197791992080Mouse
1301667Lxw5_mlupus BXSB x NZW 5 (mouse)Not determined15854919192549443Mouse
1301444Alcw5_malcohol withdrawal 5 (mouse)Not determined15854919192549443Mouse
1301748Abbp1_mA/J and C57BL/6 blood pressure 1 (mouse)Not determined162946755120529678Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
1302119Cia15_mcollagen induced arthritis 15 (mouse)Not determined16588900688496101Mouse
27095918Ulnl1_mulna length 1, 5 week (mouse)167339159129727737Mouse
4141625Emo4_memotionality 4 (mouse)Not determined6807134586235027Mouse
1302146Cocrb1_mcocaine related behavior 1 (mouse)Not determined170133533104139557Mouse
4141393Mol2_mmodifier of LPS-response 2 (mouse)Not determined7162467978183144Mouse
1300976Bmd19_mbone mineral density 19 (mouse)Not determined173266214108838414Mouse
4142394Mssq1_mmandible size and shape QTL 1 (mouse)Not determined73615692107615830Mouse
1301304Hrq3_mheart rate quantitative locus 3 (mouse)Not determined173615692107615830Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
14697705Stsl3b_mSalmonella typhimurium susceptibility locus 3b (mouse)17413915981777715Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74516235148715579Mouse

Markers in Region
Wnt6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37174,829,218 - 74,829,456UniSTSGRCm37
MGSCv37174,830,732 - 74,831,108UniSTSGRCm37
MGSCv37174,828,790 - 74,829,164UniSTSGRCm37
MGSCv37174,830,864 - 74,831,488UniSTSGRCm37
Celera175,339,228 - 75,339,604UniSTS
Celera175,337,714 - 75,337,952UniSTS
Celera175,337,286 - 75,337,660UniSTS
Celera175,339,360 - 75,339,984UniSTS
Cytogenetic Map1C3UniSTS
cM Map1 UniSTS
M89800  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38174,784,742 - 74,784,921UniSTSGRCm38
MGSCv37174,831,316 - 74,831,495UniSTSGRCm37
Celera175,339,812 - 75,339,991UniSTS
Cytogenetic Map1C3UniSTS
Whitehead_YAC1 UniSTS
RH124834  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38174,784,635 - 74,784,772UniSTSGRCm38
MGSCv37174,831,209 - 74,831,346UniSTSGRCm37
Celera175,339,705 - 75,339,842UniSTS
Cytogenetic Map1C3UniSTS
Wnt6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1C3UniSTS
Wnt6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38174,784,290 - 74,784,914UniSTSGRCm38
MGSCv37174,830,864 - 74,831,488UniSTSGRCm37
Celera175,339,360 - 75,339,984UniSTS
Cytogenetic Map1C3UniSTS
Wnt6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38174,782,644 - 74,782,882UniSTSGRCm38
MGSCv37174,829,218 - 74,829,456UniSTSGRCm37
Celera175,337,714 - 75,337,952UniSTS
Cytogenetic Map1C3UniSTS
Wnt6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38174,784,158 - 74,784,534UniSTSGRCm38
MGSCv37174,830,732 - 74,831,108UniSTSGRCm37
Celera175,339,228 - 75,339,604UniSTS
Cytogenetic Map1C3UniSTS
cM Map1 UniSTS
Wnt6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38174,782,216 - 74,782,590UniSTSGRCm38
MGSCv37174,828,790 - 74,829,164UniSTSGRCm37
Celera175,337,286 - 75,337,660UniSTS
Cytogenetic Map1C3UniSTS
Wnt6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1C3UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000006716   ⟹   ENSMUSP00000006716
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,811,051 - 74,824,481 (+)Ensembl
GRCm38.p6 Ensembl174,771,892 - 74,785,322 (+)Ensembl
RefSeq Acc Id: ENSMUST00000189544
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,821,598 - 74,823,761 (+)Ensembl
GRCm38.p6 Ensembl174,782,439 - 74,784,602 (+)Ensembl
RefSeq Acc Id: NM_009526   ⟹   NP_033552
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39174,811,051 - 74,824,478 (+)NCBI
GRCm38174,771,892 - 74,785,319 (+)NCBI
MGSCv37174,818,466 - 74,831,893 (+)RGD
Celera175,326,979 - 75,340,389 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006495887   ⟹   XP_006495950
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39174,793,499 - 74,824,481 (+)NCBI
GRCm38174,754,342 - 74,785,322 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006495888   ⟹   XP_006495951
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39174,793,499 - 74,824,481 (+)NCBI
GRCm38174,754,342 - 74,785,322 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006495889   ⟹   XP_006495952
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39174,811,304 - 74,824,481 (+)NCBI
GRCm38174,772,146 - 74,785,322 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_033552   ⟸   NM_009526
- Peptide Label: precursor
- UniProtKB: Q80ZM9 (UniProtKB/Swiss-Prot),   P22727 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006495950   ⟸   XM_006495887
- Peptide Label: isoform X1
- UniProtKB: Q80ZM9 (UniProtKB/Swiss-Prot),   P22727 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006495951   ⟸   XM_006495888
- Peptide Label: isoform X1
- UniProtKB: Q80ZM9 (UniProtKB/Swiss-Prot),   P22727 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006495952   ⟸   XM_006495889
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSMUSP00000006716   ⟸   ENSMUST00000006716

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P22727-F1-model_v2 AlphaFold P22727 1-364 view protein structure

Promoters
RGD ID:6874100
Promoter ID:EPDNEW_M501
Type:initiation region
Name:Wnt6_1
Description:Mus musculus wingless-type MMTV integration site family, member6 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38174,771,897 - 74,771,957EPDNEW
RGD ID:6846671
Promoter ID:MM_ACW:1317
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:WNT6.BSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36174,828,649 - 74,829,149 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:98960 AgrOrtholog
Ensembl Genes ENSMUSG00000033227 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000006716 ENTREZGENE
  ENSMUST00000006716.8 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.2460.20 UniProtKB/Swiss-Prot
InterPro Wnt UniProtKB/Swiss-Prot
  Wnt6 UniProtKB/Swiss-Prot
  Wnt_C UniProtKB/Swiss-Prot
  Wnt_CS UniProtKB/Swiss-Prot
KEGG Report mmu:22420 UniProtKB/Swiss-Prot
MGD MGI:98960 ENTREZGENE
NCBI Gene 22420 ENTREZGENE
PANTHER PROTEIN WNT-6 UniProtKB/Swiss-Prot
  PTHR12027 UniProtKB/Swiss-Prot
Pfam wnt UniProtKB/Swiss-Prot
PhenoGen Wnt6 PhenoGen
PRINTS WNT6PROTEIN UniProtKB/Swiss-Prot
  WNTPROTEIN UniProtKB/Swiss-Prot
PROSITE WNT1 UniProtKB/Swiss-Prot
SMART WNT1 UniProtKB/Swiss-Prot
UniProt P22727 ENTREZGENE
  Q80ZM9 ENTREZGENE
  WNT6_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q80ZM9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-07-01 Wnt6  wingless-type MMTV integration site family, member 6    wingless-related MMTV integration site 6  Symbol and/or name change 5135510 APPROVED