Cflar (CASP8 and FADD like apoptosis regulator)

Gene: Cflar (CASP8 and FADD like apoptosis regulator) Ictidomys tridecemlineatus

Analyze

Symbol:

Cflar

Name:

CASP8 and FADD like apoptosis regulator

RGD ID:

12629345

Description:

ENCODES a protein that exhibits death receptor binding (ortholog); peptidase activator activity (ortholog); protease binding (ortholog); INVOLVED IN apoptotic process (ortholog); cellular response to dexamethasone stimulus (ortholog); cellular response to epidermal growth factor stimulus (ortholog); PARTICIPATES IN FasL mediated signaling pathway; Trail mediated signaling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); autoimmune lymphoproliferative syndrome type 2B (ortholog); Autoimmune Lymphoproliferative Syndrome, Type V (ortholog); FOUND IN CD95 death-inducing signaling complex (ortholog); death-inducing signaling complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

CASP8 and FADD-like apoptosis regulator

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	158,411,636 - 158,453,829 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936726	381,835 - 423,311 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936726	381,888 - 425,565 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acute myeloid leukemia (ISO)

autoimmune lymphoproliferative syndrome type 2B (ISO)

Autoimmune Lymphoproliferative Syndrome, Type V (ISO)

Carotid Artery Injuries (ISO)

common variable immunodeficiency 1 (ISO)

congestive heart failure (ISO)

Hodgkin's lymphoma (ISO)

Hyperoxia (ISO)

interstitial lung disease 2 (ISO)

leukemia (ISO)

myelodysplastic syndrome (ISO)

Myocardial Reperfusion Injury (ISO)

nasal type extranodal NK/T-cell lymphoma (ISO)

Neurodevelopmental Disorders (ISO)

pancreatic cancer (ISO)

Plaque, Atherosclerotic (ISO)

Pulmonary Arterial Hypertension (ISO)

pulmonary fibrosis (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic process (IEA,ISO)

cellular response to dexamethasone stimulus (ISO)

cellular response to epidermal growth factor stimulus (ISO)

cellular response to estradiol stimulus (ISO)

cellular response to hypoxia (ISO)

cellular response to insulin stimulus (ISO)

cellular response to nitric oxide (ISO)

necroptotic process (ISO)

negative regulation of apoptotic process (ISO)

negative regulation of cardiac muscle cell apoptotic process (ISO)

negative regulation of cellular response to transforming growth factor beta stimulus (ISO)

negative regulation of epithelial cell apoptotic process (ISO)

negative regulation of extrinsic apoptotic signaling pathway (IEA,ISO)

negative regulation of extrinsic apoptotic signaling pathway via death domain receptors (IEA,ISO)

negative regulation of hepatocyte apoptotic process (ISO)

negative regulation of myoblast fusion (ISO)

negative regulation of necroptotic process (ISO)

negative regulation of reactive oxygen species biosynthetic process (ISO)

positive regulation of canonical NF-kappaB signal transduction (IEA)

positive regulation of ERK1 and ERK2 cascade (ISO)

positive regulation of extracellular matrix organization (ISO)

positive regulation of glomerular mesangial cell proliferation (ISO)

positive regulation of hepatocyte proliferation (ISO)

positive regulation of neuron projection development (ISO)

proteolysis (IEA)

regulation of apoptotic process (IEA)

regulation of necroptotic process (IEA)

regulation of skeletal muscle satellite cell proliferation (ISO)

response to bacterium (ISO)

response to hypoxia (ISO)

response to testosterone (ISO)

skeletal muscle atrophy (ISO)

skeletal muscle tissue development (ISO)

skeletal muscle tissue regeneration (ISO)

skeletal myofibril assembly (ISO)

wound healing (ISO)

Cellular Component

CD95 death-inducing signaling complex (ISO)

cytoplasm (IEA)

death-inducing signaling complex (IEA,ISO)

ripoptosome (IEA)

Molecular Function

cysteine-type endopeptidase activity (IEA)

death receptor binding (ISO)

enzyme activator activity (IEA)

peptidase activator activity (ISO)

protease binding (IEA,ISO)

protein binding (ISO)

protein-containing complex binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

FasL mediated signaling pathway (ISO)

Trail mediated signaling pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Cflar
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	158,411,636 - 158,453,829 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936726	381,835 - 423,311 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936726	381,888 - 425,565 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CFLAR
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	201,116,164 - 201,176,687 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	201,116,154 - 201,176,687 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	201,980,887 - 202,041,410 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	201,689,135 - 201,737,260 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	201,806,395 - 201,854,507	NCBI
Celera	2	195,735,441 - 195,783,644 (+)	NCBI		Celera
Cytogenetic Map	2	q33.1	NCBI
HuRef	2	193,832,403 - 193,888,781 (+)	NCBI		HuRef
CHM1_1	2	201,986,842 - 202,043,389 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	201,599,606 - 201,660,139 (+)	NCBI		T2T-CHM13v2.0

Cflar
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	58,750,353 - 58,798,043 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	58,750,667 - 58,798,043 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	58,711,311 - 58,758,884 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	58,711,508 - 58,758,884 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	58,770,130 - 58,815,728 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	58,657,840 - 58,699,711 (+)	NCBI		MGSCv36	mm8
Celera	1	59,232,248 - 59,277,933 (+)	NCBI		Celera
Cytogenetic Map	1	C1.3	NCBI
cM Map	1	29.16	NCBI

Cflar
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	67,679,502 - 67,747,226 (+)	NCBI		GRCr8
mRatBN7.2	9	60,185,338 - 60,236,173 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	60,185,452 - 60,237,034 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	68,680,901 - 68,731,637 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	73,796,857 - 73,847,595 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	72,115,115 - 72,165,854 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	65,534,608 - 65,586,395 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	65,534,704 - 65,587,251 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	65,342,359 - 65,390,152 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	57,309,836 - 57,356,635 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	57,475,312 - 57,481,853 (+)	NCBI
Celera	9	57,626,739 - 57,673,502 (+)	NCBI		Celera
Cytogenetic Map	9	q31	NCBI

Cflar
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	412,632 - 434,741 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955403	415,092 - 442,214 (-)	NCBI	ChiLan1.0	ChiLan1.0

CFLAR
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	103,740,494 - 103,799,335 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	103,757,374 - 103,814,330 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	88,373,057 - 88,429,959 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	206,528,943 - 206,585,848 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	206,528,943 - 206,577,045 (+)	Ensembl	panpan1.1		panPan2

CFLAR
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	10,268,407 - 10,307,803 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	37	10,268,582 - 10,345,095 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	11,153,354 - 11,191,827 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	37	10,173,456 - 10,212,316 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	37	10,173,527 - 10,222,398 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	37	10,154,909 - 10,193,670 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	37	10,133,242 - 10,172,157 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	37	10,126,854 - 10,165,741 (+)	NCBI		UU_Cfam_GSD_1.0

CFLAR
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	104,781,616 - 104,835,630 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	104,780,744 - 104,835,631 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	116,105,245 - 116,184,924 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CFLAR
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	86,768,252 - 86,819,963 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	86,782,240 - 86,816,652 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	112,604,271 - 112,651,003 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cflar
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624889	75,396 - 100,989 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624889	76,760 - 108,619 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005338900	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013364597	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021735655	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021735656	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021735657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021735658	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040294687	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040294688	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040294690	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040294691	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040294692	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040294693	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040294694	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040294695	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040294696	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002485538	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000009643 ⟹ ENSSTOP00000008652

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936726	381,835 - 423,311 (+)	Ensembl

RefSeq Acc Id:

ENSSTOT00000042246 ⟹ ENSSTOP00000025069

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936726	381,835 - 423,311 (+)	Ensembl

RefSeq Acc Id:

XM_005338900 ⟹ XP_005338957

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	158,411,835 - 158,453,829 (+)	NCBI
SpeTri2.0	NW_004936726	381,888 - 424,280 (+)	NCBI

Sequence:

show sequence

AAAACAAAACTTCGAACATCCAATACGGTTTCACAGAGCACTCAGCTGTTGTAGAACAGGAAAG
CATTAACAGGAAGCAGCGGTTGACGGTCTCGCTGGTTTTTCAACTCAAAGGGGACTCCTAGGGG
TCTCGTGCGTGGGGTCTCTGGACCGCTCAGGGAAACTGTAAGTTGAGACACGTCCAGGGCAAGC
CCAGGCTACCGCAGTGGGAGGGAAGGGAAGCGCTACGCCCTATAATCGCCGGCTCCACGTCAGT
TTCTAGGCCTCCACGCCGACAGTGCCTTCCGGTGTCTGGGGGAGTGAAGGCCCAGGGGTCGGAG
CGGAGGAGAGCCCGGGCGGGAGCAGGACGGTGTTGGAGAGACCAAGTAAAGTTACCTACGTAGA
CAATCTGGACAAGACCTACTACCATACAACAAAGGAGGAAACTTGTGGAACTTCTGCACTGGGA
AGAACTCTGAAAGAAATGGAGAAAGCCCTCAGAAATGAAGTTGGTGACCTGGCGGCTCTCTGTT
GAGCACTATACTACTGTTCCTTAGGATGGCACTGTGCCAGACGTCTGCCGAGGTCATTCTTCAG
GTGGAAGAGGCACTTGATGAAGAAGAAAAGGAGATGCTGTTGTTTTTGTGTCTGGATATTACTG
CAGATGTAGTTCCACCTACAGTCAGGGACCTTCTGGATATTTTATGTGAGAGAGGGCAGCTGTC
TGTGGTGCAGTTGGCCGAGCTGCTCTACAGAGTGAGGCGGTTTGACCTGCTCAAGCGGATTTTG
AAGATGGACAGAATAGCCGTGGAGGCTCACCTGCGCAGCCATCCTCACCTTGTTTCGGACTATA
GGGTGCTGATGGTGGAGATTGGTGAGAATTTGGATAAAAAAGATGTATCAGCACTGATTTTCCT
CATGAGGGATTACACAGGCCGAGGCAAGGTCTCCAAGGATAAGAGTTTCTTGGATCTGGTGGTT
GATTTGGAGAAACTGAATTTGATTGCTCCAGATCAACTGGATTTATTAGAAGAATGTCTAAAGA
ACATCCACAGAATAGACCTGAAGACAAAAATCCAGAAGTACAAGCAGTCTGCTCAAGGAGCTAT
GAAAGGAGCAGGAACAAGTTGTGTGAATTCTCTCCACACCTCTCTCCCAAACTTGAGTCTCAAA
GATCCTTCATATAGCATAAGGCTCCAGAATGGGAGAAGTAAAGGACAAAGACTTTGGCCACTCC
TTCAAAGAGAACCAGTAAAGACATCCATTCAGGAATCAGGAGCTTTTTTCCTTCAGCACATCTC
TGAAGAGATATACAAGATGCAGAGCAAGCCCCTTGGAATCTGCTTGATAATCGATTGCATTGGC
AATGACACAGAAGTTCTTCGACACACCTTCACTTCCCTGGGCTATGAAGTCCAAAATTTTTTGC
ATCTTCGTGTGAAAGACATAAGCCATATTCTTCACCAAGTTGCCAATCTGCCCCGACACCGACA
CCATGACAGCTTTGTGTGTGTCCTGGTGAGCCGAGGAGGCTCCCAAAGTGTGTTTGGCGTGGAT
GAGACTCACTCAGGGTTATCCTTGCATCATATCAGGAGGATATTCATGGGGGACAAATGTCCTT
CCCTCATAGGGAAACCAAAGCTCTTTTTTATTCAGAACTATGTGGTGTCTGAGGGCCAGAAGGA
AGACAGCAGCCTGCTGGAGGTCGATAGTCCAGCGGTGACCAATGTGGAATCCAAGGAACCAAAG
CCTGGGCCAAGCACGGTTCACCGAGAAGCTGACTTCTTCTGGAGCTTGTGCACTGCTAGTGTGT
CCCTGCTGGAGCAGGCCTCTAGCTCACCCTCCTTGTACCTGCAGTGCCTCTCTCAGAAGCTGGA
GCGAGAAAGAAAACGCCCACTTCTGGATCTCCACCTTGACCTCAACCGCAAAGTGTATGATTGG
AACAGCAGAGTTTCTGCCAAGGAAAAGTACTGCCTCCTTTTGCAACACACCCTGAGAAAGAAAC
TCATCCTGTCTCCCACATGAAAACCCCAAACCTTTCTTCACCTGGAGGTCTCCATCTCTAGAGA
GAGAGTGGTTTTCAAGCATGCATGCATGTGAATGGTATGTGGAATAAGATACTGCACAATGCTG
TACAATGAGGAATGCTTGACTGGAAGTGGGGTTTGAACTGTCTGAGAAGAAAGTATCGGCATCT
GTTGCTGAAAGAGCTGACCAGGTCAGCCTTGGGAGGGAAAAGCTTCAAAACAACAGTTGAGCAC
TGTTGAATTGGGCAAGTACCAATCAAGTGAACCCAAGATACAGAGATCAGCTTAATTAACCTGT
GTATATCCATACTCCATCTTAAAAAGTAAAATGCAAATGCAGATTGAGGAAATCAGAACACCAC
AAACAGGGTCTTGCCTTCTAGAAACAACCACAGTTAACCAAAACTTTGTGTATCACCTGGCAAA
TTTTTTTCCTGCTCCCAAGATTTAAGTAAGAGAGAGGTTATCTTAGTCCATTTGGGCAACTACA
TCAAATGATCATAGACTTGGTAGCTTAAACAGCACACATTTATTTCTTACAGTTCTAGAGGCTA
GCAAATCCAAGGTGCTGTCAGATCCTGTGTCTGGTGAGGGCCTTCTTGGTTTTCAGAGAGCTAT
CTTCTGTTCTCAAATGGCAGAAAGAGAGGGAGGGATTGGGGAGGAAGAGGGACAGAGAGAGAAA
CTTACAATACACCTTCCTGTCTGTTATTGTTTAGTGAGTGGGGGACTCCTGCAGTTATCTTTAT
ATTTACTTTGCTTAGGGGCATCAGGAGGAAATACTGTGTCTGTGTGGCCCTGTGAACCAGCACC
CCATGCTAATTATAATAGAGAGAATGTAAGAGGAATCTTAATGCAGCTTTGGTTGCCTTTTGCA
GTTCCATCTTGACAAAGTGACAAGCATTTTCCATTTATTCTTTTTCTTATCATAAACAATTACA
ACCACACGCATGCCAGGCAAGCGCGCCAC

hide sequence

RefSeq Acc Id:

XM_013364597 ⟹ XP_013220051

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	158,411,636 - 158,453,829 (+)	NCBI
SpeTri2.0	NW_004936726	381,888 - 424,280 (+)	NCBI

Sequence:

show sequence

AAAACAAAACTTCGAACATCCAATACGGTTTCACAGAGCACTCAGCTGTTGTAGAACAGGAAAG
CATTAACAGGAAGCAGCGGTTGACGGTCTCGCTGGTTTTTCAACTCAAAGGGGACTCCTAGGGG
TCTCGTGCGTGGGGTCTCTGGACCGCTCAGGGAAACTGTGTTGGAGAGACCAAGTAAAGTTACC
TACGTAGACAATCTGGACAAGACCTACTACCATACAACAAAGGAGGAAACTTGTGGAACTTCTG
CACTGGGAAGAACTCTGAAAGAAATGGAGAAAGCCCTCAGAAATGAAGTTGGTGACCTGGCGGC
TCTCTGTTGAGCACTATACTACTGTTCCTTAGGATGGCACTGTGCCAGACGTCTGCCGAGGTCA
TTCTTCAGGTGGAAGAGGCACTTGATGAAGAAGAAAAGGAGATGCTGTTGTTTTTGTGTCTGGA
TATTACTGCAGATGTAGTTCCACCTACAGTCAGGGACCTTCTGGATATTTTATGTGAGAGAGGG
CAGCTGTCTGTGGTGCAGTTGGCCGAGCTGCTCTACAGAGTGAGGCGGTTTGACCTGCTCAAGC
GGATTTTGAAGATGGACAGAATAGCCGTGGAGGCTCACCTGCGCAGCCATCCTCACCTTGTTTC
GGACTATAGGGTGCTGATGGTGGAGATTGGTGAGAATTTGGATAAAAAAGATGTATCAGCACTG
ATTTTCCTCATGAGGGATTACACAGGCCGAGGCAAGGTCTCCAAGGATAAGAGTTTCTTGGATC
TGGTGGTTGATTTGGAGAAACTGAATTTGATTGCTCCAGATCAACTGGATTTATTAGAAGAATG
TCTAAAGAACATCCACAGAATAGACCTGAAGACAAAAATCCAGAAGTACAAGCAGTCTGCTCAA
GGAGCTATGAAAGGAGCAGGAACAAGTTGTGTGAATTCTCTCCACACCTCTCTCCCAAACTTGA
GTCTCAAAGATCCTTCATATAGCATAAGGCTCCAGAATGGGAGAAGTAAAGGACAAAGACTTTG
GCCACTCCTTCAAAGAGAACCAGTAAAGACATCCATTCAGGAATCAGGAGCTTTTTTCCTTCAG
CACATCTCTGAAGAGATATACAAGATGCAGAGCAAGCCCCTTGGAATCTGCTTGATAATCGATT
GCATTGGCAATGACACAGAAGTTCTTCGACACACCTTCACTTCCCTGGGCTATGAAGTCCAAAA
TTTTTTGCATCTTCGTGTGAAAGACATAAGCCATATTCTTCACCAAGTTGCCAATCTGCCCCGA
CACCGACACCATGACAGCTTTGTGTGTGTCCTGGTGAGCCGAGGAGGCTCCCAAAGTGTGTTTG
GCGTGGATGAGACTCACTCAGGGTTATCCTTGCATCATATCAGGAGGATATTCATGGGGGACAA
ATGTCCTTCCCTCATAGGGAAACCAAAGCTCTTTTTTATTCAGAACTATGTGGTGTCTGAGGGC
CAGAAGGAAGACAGCAGCCTGCTGGAGGTCGATAGTCCAGCGGTGACCAATGTGGAATCCAAGG
AACCAAAGCCTGGGCCAAGCACGGTTCACCGAGAAGCTGACTTCTTCTGGAGCTTGTGCACTGC
TAGTGTGTCCCTGCTGGAGCAGGCCTCTAGCTCACCCTCCTTGTACCTGCAGTGCCTCTCTCAG
AAGCTGGAGCGAGAAAGAAAACGCCCACTTCTGGATCTCCACCTTGACCTCAACCGCAAAGTGT
ATGATTGGAACAGCAGAGTTTCTGCCAAGGAAAAGTACTGCCTCCTTTTGCAACACACCCTGAG
AAAGAAACTCATCCTGTCTCCCACATGAAAACCCCAAACCTTTCTTCACCTGGAGGTCTCCATC
TCTAGAGAGAGAGTGGTTTTCAAGCATGCATGCATGTGAATGGTATGTGGAATAAGATACTGCA
CAATGCTGTACAATGAGGAATGCTTGACTGGAAGTGGGGTTTGAACTGTCTGAGAAGAAAGTAT
CGGCATCTGTTGCTGAAAGAGCTGACCAGGTCAGCCTTGGGAGGGAAAAGCTTCAAAACAACAG
TTGAGCACTGTTGAATTGGGCAAGTACCAATCAAGTGAACCCAAGATACAGAGATCAGCTTAAT
TAACCTGTGTATATCCATACTCCATCTTAAAAAGTAAAATGCAAATGCAGATTGAGGAAATCAG
AACACCACAAACAGGGTCTTGCCTTCTAGAAACAACCACAGTTAACCAAAACTTTGTGTATCAC
CTGGCAAATTTTTTTCCTGCTCCCAAGATTTAAGTAAGAGAGAGGTTATCTTAGTCCATTTGGG
CAACTACATCAAATGATCATAGACTTGGTAGCTTAAACAGCACACATTTATTTCTTACAGTTCT
AGAGGCTAGCAAATCCAAGGTGCTGTCAGATCCTGTGTCTGGTGAGGGCCTTCTTGGTTTTCAG
AGAGCTATCTTCTGTTCTCAAATGGCAGAAAGAGAGGGAGGGATTGGGGAGGAAGAGGGACAGA
GAGAGAAACTTACAATACACCTTCCTGTCTGTTATTGTTTAGTGAGTGGGGGACTCCTGCAGTT
ATCTTTATATTTACTTTGCTTAGGGGCATCAGGAGGAAATACTGTGTCTGTGTGGCCCTGTGAA
CCAGCACCCCATGCTAATTATAATAGAGAGAATGTAAGAGGAATCTTAATGCAGCTTTGGTTGC
CTTTTGCAGTTCCATCTTGACAAAGTGACAAGCATTTTCCATTTATTCTTTTTCTTATCATAAA
CAATTACAACCACACGCATGCCAGGCAAGCGCGCCAC

hide sequence

RefSeq Acc Id:

XM_021735656 ⟹ XP_021591331

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	158,411,843 - 158,453,829 (+)	NCBI
SpeTri2.0	NW_004936726	381,888 - 424,280 (+)	NCBI

Sequence:

show sequence

AAAACAAAACTTCGAACATCCAATACGGTTTCACAGAGCACTCAGCTGTTGTAGAACAGGAAAG
CATTAACAGGAAGCAGCGGTTGACGGTCTCGCTGGTTTTTCAACTCAAAGGGGACTCCTAGGGG
TCTCGTGCGTGGGGTCTCTGGACCGCTCAGGGAAACTGTAAGTTGAGACACGTCCAGGGCAAGC
CCAGGCTACCGCAGTGGGAGGGAAGGGAAGCGCTACGCCCTATAATCGCCGGCTCCACGTCAGT
TTCTAGGCCTCCACGCCGACAGTGCCTTCCGGTGTCTGGGGGAGTGAAGGCCCAGGGGTCGGAG
CGGAGGAGAGCCCGGGCGGGAGCAGGACGAACTTCTGCACTGGGAAGAACTCTGAAAGAAATGG
AGAAAGCCCTCAGAAATGAAGTTGGTGACCTGGCGGCTCTCTGTTGAGCACTATACTACTGTTC
CTTAGGATGGCACTGTGCCAGACGTCTGCCGAGGTCATTCTTCAGGTGGAAGAGGCACTTGATG
AAGAAGAAAAGGAGATGCTGTTGTTTTTGTGTCTGGATATTACTGCAGATGTAGTTCCACCTAC
AGTCAGGGACCTTCTGGATATTTTATGTGAGAGAGGGCAGCTGTCTGTGGTGCAGTTGGCCGAG
CTGCTCTACAGAGTGAGGCGGTTTGACCTGCTCAAGCGGATTTTGAAGATGGACAGAATAGCCG
TGGAGGCTCACCTGCGCAGCCATCCTCACCTTGTTTCGGACTATAGGGTGCTGATGGTGGAGAT
TGGTGAGAATTTGGATAAAAAAGATGTATCAGCACTGATTTTCCTCATGAGGGATTACACAGGC
CGAGGCAAGGTCTCCAAGGATAAGAGTTTCTTGGATCTGGTGGTTGATTTGGAGAAACTGAATT
TGATTGCTCCAGATCAACTGGATTTATTAGAAGAATGTCTAAAGAACATCCACAGAATAGACCT
GAAGACAAAAATCCAGAAGTACAAGCAGTCTGCTCAAGGAGCTATGAAAGGAGCAGGAACAAGT
TGTGTGAATTCTCTCCACACCTCTCTCCCAAACTTGAGTCTCAAAGATCCTTCATATAGCATAA
GGCTCCAGAATGGGAGAAGTAAAGGACAAAGACTTTGGCCACTCCTTCAAAGAGAACCAGTAAA
GACATCCATTCAGGAATCAGGAGCTTTTTTCCTTCAGCACATCTCTGAAGAGATATACAAGATG
CAGAGCAAGCCCCTTGGAATCTGCTTGATAATCGATTGCATTGGCAATGACACAGAAGTTCTTC
GACACACCTTCACTTCCCTGGGCTATGAAGTCCAAAATTTTTTGCATCTTCGTGTGAAAGACAT
AAGCCATATTCTTCACCAAGTTGCCAATCTGCCCCGACACCGACACCATGACAGCTTTGTGTGT
GTCCTGGTGAGCCGAGGAGGCTCCCAAAGTGTGTTTGGCGTGGATGAGACTCACTCAGGGTTAT
CCTTGCATCATATCAGGAGGATATTCATGGGGGACAAATGTCCTTCCCTCATAGGGAAACCAAA
GCTCTTTTTTATTCAGAACTATGTGGTGTCTGAGGGCCAGAAGGAAGACAGCAGCCTGCTGGAG
GTCGATAGTCCAGCGGTGACCAATGTGGAATCCAAGGAACCAAAGCCTGGGCCAAGCACGGTTC
ACCGAGAAGCTGACTTCTTCTGGAGCTTGTGCACTGCTAGTGTGTCCCTGCTGGAGCAGGCCTC
TAGCTCACCCTCCTTGTACCTGCAGTGCCTCTCTCAGAAGCTGGAGCGAGAAAGAAAACGCCCA
CTTCTGGATCTCCACCTTGACCTCAACCGCAAAGTGTATGATTGGAACAGCAGAGTTTCTGCCA
AGGAAAAGTACTGCCTCCTTTTGCAACACACCCTGAGAAAGAAACTCATCCTGTCTCCCACATG
AAAACCCCAAACCTTTCTTCACCTGGAGGTCTCCATCTCTAGAGAGAGAGTGGTTTTCAAGCAT
GCATGCATGTGAATGGTATGTGGAATAAGATACTGCACAATGCTGTACAATGAGGAATGCTTGA
CTGGAAGTGGGGTTTGAACTGTCTGAGAAGAAAGTATCGGCATCTGTTGCTGAAAGAGCTGACC
AGGTCAGCCTTGGGAGGGAAAAGCTTCAAAACAACAGTTGAGCACTGTTGAATTGGGCAAGTAC
CAATCAAGTGAACCCAAGATACAGAGATCAGCTTAATTAACCTGTGTATATCCATACTCCATCT
TAAAAAGTAAAATGCAAATGCAGATTGAGGAAATCAGAACACCACAAACAGGGTCTTGCCTTCT
AGAAACAACCACAGTTAACCAAAACTTTGTGTATCACCTGGCAAATTTTTTTCCTGCTCCCAAG
ATTTAAGTAAGAGAGAGGTTATCTTAGTCCATTTGGGCAACTACATCAAATGATCATAGACTTG
GTAGCTTAAACAGCACACATTTATTTCTTACAGTTCTAGAGGCTAGCAAATCCAAGGTGCTGTC
AGATCCTGTGTCTGGTGAGGGCCTTCTTGGTTTTCAGAGAGCTATCTTCTGTTCTCAAATGGCA
GAAAGAGAGGGAGGGATTGGGGAGGAAGAGGGACAGAGAGAGAAACTTACAATACACCTTCCTG
TCTGTTATTGTTTAGTGAGTGGGGGACTCCTGCAGTTATCTTTATATTTACTTTGCTTAGGGGC
ATCAGGAGGAAATACTGTGTCTGTGTGGCCCTGTGAACCAGCACCCCATGCTAATTATAATAGA
GAGAATGTAAGAGGAATCTTAATGCAGCTTTGGTTGCCTTTTGCAGTTCCATCTTGACAAAGTG
ACAAGCATTTTCCATTTATTCTTTTTCTTATCATAAACAATTACAACCACACGCATGCCAGGCA
AGCGCGCCAC

hide sequence

RefSeq Acc Id:

XM_021735657 ⟹ XP_021591332

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	158,411,649 - 158,453,829 (+)	NCBI
SpeTri2.0	NW_004936726	381,888 - 424,280 (+)	NCBI

Sequence:

show sequence

AAAACAAAACTTCGAACATCCAATACGGTTTCACAGAGCACTCAGCTGTTGTAGAACAGGAAAG
CATTAACAGGAAGCAGCGGTTGACGGTCTCGCTGGTTTTTCAACTCAAAGGGGACTCCTAGGGG
TCTCGTGCGTGGGGTCTCTGGACCGCTCAGGGAAACTAACTTCTGCACTGGGAAGAACTCTGAA
AGAAATGGAGAAAGCCCTCAGAAATGAAGTTGGTGACCTGGCGGCTCTCTGTTGAGCACTATAC
TACTGTTCCTTAGGATGGCACTGTGCCAGACGTCTGCCGAGGTCATTCTTCAGGTGGAAGAGGC
ACTTGATGAAGAAGAAAAGGAGATGCTGTTGTTTTTGTGTCTGGATATTACTGCAGATGTAGTT
CCACCTACAGTCAGGGACCTTCTGGATATTTTATGTGAGAGAGGGCAGCTGTCTGTGGTGCAGT
TGGCCGAGCTGCTCTACAGAGTGAGGCGGTTTGACCTGCTCAAGCGGATTTTGAAGATGGACAG
AATAGCCGTGGAGGCTCACCTGCGCAGCCATCCTCACCTTGTTTCGGACTATAGGGTGCTGATG
GTGGAGATTGGTGAGAATTTGGATAAAAAAGATGTATCAGCACTGATTTTCCTCATGAGGGATT
ACACAGGCCGAGGCAAGGTCTCCAAGGATAAGAGTTTCTTGGATCTGGTGGTTGATTTGGAGAA
ACTGAATTTGATTGCTCCAGATCAACTGGATTTATTAGAAGAATGTCTAAAGAACATCCACAGA
ATAGACCTGAAGACAAAAATCCAGAAGTACAAGCAGTCTGCTCAAGGAGCTATGAAAGGAGCAG
GAACAAGTTGTGTGAATTCTCTCCACACCTCTCTCCCAAACTTGAGTCTCAAAGATCCTTCATA
TAGCATAAGGCTCCAGAATGGGAGAAGTAAAGGACAAAGACTTTGGCCACTCCTTCAAAGAGAA
CCAGTAAAGACATCCATTCAGGAATCAGGAGCTTTTTTCCTTCAGCACATCTCTGAAGAGATAT
ACAAGATGCAGAGCAAGCCCCTTGGAATCTGCTTGATAATCGATTGCATTGGCAATGACACAGA
AGTTCTTCGACACACCTTCACTTCCCTGGGCTATGAAGTCCAAAATTTTTTGCATCTTCGTGTG
AAAGACATAAGCCATATTCTTCACCAAGTTGCCAATCTGCCCCGACACCGACACCATGACAGCT
TTGTGTGTGTCCTGGTGAGCCGAGGAGGCTCCCAAAGTGTGTTTGGCGTGGATGAGACTCACTC
AGGGTTATCCTTGCATCATATCAGGAGGATATTCATGGGGGACAAATGTCCTTCCCTCATAGGG
AAACCAAAGCTCTTTTTTATTCAGAACTATGTGGTGTCTGAGGGCCAGAAGGAAGACAGCAGCC
TGCTGGAGGTCGATAGTCCAGCGGTGACCAATGTGGAATCCAAGGAACCAAAGCCTGGGCCAAG
CACGGTTCACCGAGAAGCTGACTTCTTCTGGAGCTTGTGCACTGCTAGTGTGTCCCTGCTGGAG
CAGGCCTCTAGCTCACCCTCCTTGTACCTGCAGTGCCTCTCTCAGAAGCTGGAGCGAGAAAGAA
AACGCCCACTTCTGGATCTCCACCTTGACCTCAACCGCAAAGTGTATGATTGGAACAGCAGAGT
TTCTGCCAAGGAAAAGTACTGCCTCCTTTTGCAACACACCCTGAGAAAGAAACTCATCCTGTCT
CCCACATGAAAACCCCAAACCTTTCTTCACCTGGAGGTCTCCATCTCTAGAGAGAGAGTGGTTT
TCAAGCATGCATGCATGTGAATGGTATGTGGAATAAGATACTGCACAATGCTGTACAATGAGGA
ATGCTTGACTGGAAGTGGGGTTTGAACTGTCTGAGAAGAAAGTATCGGCATCTGTTGCTGAAAG
AGCTGACCAGGTCAGCCTTGGGAGGGAAAAGCTTCAAAACAACAGTTGAGCACTGTTGAATTGG
GCAAGTACCAATCAAGTGAACCCAAGATACAGAGATCAGCTTAATTAACCTGTGTATATCCATA
CTCCATCTTAAAAAGTAAAATGCAAATGCAGATTGAGGAAATCAGAACACCACAAACAGGGTCT
TGCCTTCTAGAAACAACCACAGTTAACCAAAACTTTGTGTATCACCTGGCAAATTTTTTTCCTG
CTCCCAAGATTTAAGTAAGAGAGAGGTTATCTTAGTCCATTTGGGCAACTACATCAAATGATCA
TAGACTTGGTAGCTTAAACAGCACACATTTATTTCTTACAGTTCTAGAGGCTAGCAAATCCAAG
GTGCTGTCAGATCCTGTGTCTGGTGAGGGCCTTCTTGGTTTTCAGAGAGCTATCTTCTGTTCTC
AAATGGCAGAAAGAGAGGGAGGGATTGGGGAGGAAGAGGGACAGAGAGAGAAACTTACAATACA
CCTTCCTGTCTGTTATTGTTTAGTGAGTGGGGGACTCCTGCAGTTATCTTTATATTTACTTTGC
TTAGGGGCATCAGGAGGAAATACTGTGTCTGTGTGGCCCTGTGAACCAGCACCCCATGCTAATT
ATAATAGAGAGAATGTAAGAGGAATCTTAATGCAGCTTTGGTTGCCTTTTGCAGTTCCATCTTG
ACAAAGTGACAAGCATTTTCCATTTATTCTTTTTCTTATCATAAACAATTACAACCACACGCAT
GCCAGGCAAGCGCGCCAC

hide sequence

RefSeq Acc Id:

XM_021735658 ⟹ XP_021591333

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	158,430,182 - 158,453,829 (+)	NCBI
SpeTri2.0	NW_004936726	400,588 - 424,280 (+)	NCBI

Sequence:

show sequence

AGCTCCTCTGCAGGCTTGACCGGTGGGAGGGCGTGAGGTGGCCTAGGCTCTACTGAATGACAAA
AATAAGGACAGTAACAAGAGCAGCCACATCACTTTCTTTTCCCTCTCATCCAAGTGCTACCTGA
TATCACTTCATTGCTTTGAACTCTTTGAATTCTTAAAATGCGCTTGCTTGAAGGAATTGGGTAG
AAGAGCATAATGACAGTGGAAGGGACAGATGGTACATGTTTGCCTGAAGGACAGAATGACAAGA
AAGGAAGAAAGATGGGAACCACTGAGAGCTAGTAATTCTTGCCAGCTTCTGGCAGTGTGAGAGC
CACAGTGGTGTTGCTAGCTGATTTTCTGTGATGTCATTTTTTTTTTGACAATTTCCGGAACTGA
GAAAGGAAATAACAAGTCTATAATAATCTTCCTATCTTTGTGGAACTCCATGACACCCTGACTT
TCTGTCAGTCGTTGTCCTGCAGAGGAAGTTTAGCGGGGTGAGTTTCCTTCTGGTGGTCCTGCCC
TGGGAGAGACCCTGGGGAACTCTTCAGTTGACCACCTCCTAAGCCCCCTTCAGGTCAAAAGGGA
GAATAGCAGCTGTGGTCCTCTTAAGTTCAGGCGCCTCTTCCTCCTGCTCTCAGGATATGTCTTA
AAGGTTCAAAAGGGGCACAGAAGTCATTGGAAAGAATGAGTTTTCTGGTGGGGGAGGAAGAGAA
CTTGTTCCTAAGCTGCTGTTTCTTTTTTCTCCAGGCCACCAGCCTTTTGTTCAATCGATAATGT
TTATTTGGAAATGATATATATTATCAAGAACTGTACTAAAGAGAGCTGAAAGCAGTGTGGGCTT
TGGAAAGTATAACAGAGTTGAGGCTGCAAGGCCTGTTTCAAGTCTCACATCTACAATTATATGC
CCTGCAGGGTGGCCAGTCACTAACCTGGGTTGAGCCTTTGTTTCCTGGCTGTAAACTGAAGAAG
AATAATATCCAACTTCAGAAGGCTATTGGTGCTGATGGTGGAGATTGGTGAGAATTTGGATAAA
AAAGATGTATCAGCACTGATTTTCCTCATGAGGGATTACACAGGCCGAGGCAAGGTCTCCAAGG
ATAAGAGTTTCTTGGATCTGGTGGTTGATTTGGAGAAACTGAATTTGATTGCTCCAGATCAACT
GGATTTATTAGAAGAATGTCTAAAGAACATCCACAGAATAGACCTGAAGACAAAAATCCAGAAG
TACAAGCAGTCTGCTCAAGGAGCTATGAAAGGAGCAGGAACAAGTTGTGTGAATTCTCTCCACA
CCTCTCTCCCAAACTTGAGTCTCAAAGATCCTTCATATAGCATAAGGCTCCAGAATGGGAGAAG
TAAAGGACAAAGACTTTGGCCACTCCTTCAAAGAGAACCAGTAAAGACATCCATTCAGGAATCA
GGAGCTTTTTTCCTTCAGCACATCTCTGAAGAGATATACAAGATGCAGAGCAAGCCCCTTGGAA
TCTGCTTGATAATCGATTGCATTGGCAATGACACAGAAGTTCTTCGACACACCTTCACTTCCCT
GGGCTATGAAGTCCAAAATTTTTTGCATCTTCGTGTGAAAGACATAAGCCATATTCTTCACCAA
GTTGCCAATCTGCCCCGACACCGACACCATGACAGCTTTGTGTGTGTCCTGGTGAGCCGAGGAG
GCTCCCAAAGTGTGTTTGGCGTGGATGAGACTCACTCAGGGTTATCCTTGCATCATATCAGGAG
GATATTCATGGGGGACAAATGTCCTTCCCTCATAGGGAAACCAAAGCTCTTTTTTATTCAGAAC
TATGTGGTGTCTGAGGGCCAGAAGGAAGACAGCAGCCTGCTGGAGGTCGATAGTCCAGCGGTGA
CCAATGTGGAATCCAAGGAACCAAAGCCTGGGCCAAGCACGGTTCACCGAGAAGCTGACTTCTT
CTGGAGCTTGTGCACTGCTAGTGTGTCCCTGCTGGAGCAGGCCTCTAGCTCACCCTCCTTGTAC
CTGCAGTGCCTCTCTCAGAAGCTGGAGCGAGAAAGAAAACGCCCACTTCTGGATCTCCACCTTG
ACCTCAACCGCAAAGTGTATGATTGGAACAGCAGAGTTTCTGCCAAGGAAAAGTACTGCCTCCT
TTTGCAACACACCCTGAGAAAGAAACTCATCCTGTCTCCCACATGAAAACCCCAAACCTTTCTT
CACCTGGAGGTCTCCATCTCTAGAGAGAGAGTGGTTTTCAAGCATGCATGCATGTGAATGGTAT
GTGGAATAAGATACTGCACAATGCTGTACAATGAGGAATGCTTGACTGGAAGTGGGGTTTGAAC
TGTCTGAGAAGAAAGTATCGGCATCTGTTGCTGAAAGAGCTGACCAGGTCAGCCTTGGGAGGGA
AAAGCTTCAAAACAACAGTTGAGCACTGTTGAATTGGGCAAGTACCAATCAAGTGAACCCAAGA
TACAGAGATCAGCTTAATTAACCTGTGTATATCCATACTCCATCTTAAAAAGTAAAATGCAAAT
GCAGATTGAGGAAATCAGAACACCACAAACAGGGTCTTGCCTTCTAGAAACAACCACAGTTAAC
CAAAACTTTGTGTATCACCTGGCAAATTTTTTTCCTGCTCCCAAGATTTAAGTAAGAGAGAGGT
TATCTTAGTCCATTTGGGCAACTACATCAAATGATCATAGACTTGGTAGCTTAAACAGCACACA
TTTATTTCTTACAGTTCTAGAGGCTAGCAAATCCAAGGTGCTGTCAGATCCTGTGTCTGGTGAG
GGCCTTCTTGGTTTTCAGAGAGCTATCTTCTGTTCTCAAATGGCAGAAAGAGAGGGAGGGATTG
GGGAGGAAGAGGGACAGAGAGAGAAACTTACAATACACCTTCCTGTCTGTTATTGTTTAGTGAG
TGGGGGACTCCTGCAGTTATCTTTATATTTACTTTGCTTAGGGGCATCAGGAGGAAATACTGTG
TCTGTGTGGCCCTGTGAACCAGCACCCCATGCTAATTATAATAGAGAGAATGTAAGAGGAATCT
TAATGCAGCTTTGGTTGCCTTTTGCAGTTCCATCTTGACAAAGTGACAAGCATTTTCCATTTAT
TCTTTTTCTTATCATAAACAATTACAACCACACGCATGCCAGGCAAGCGCGCCAC

hide sequence

RefSeq Acc Id:

XM_040294687 ⟹ XP_040150621

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	158,413,166 - 158,453,829 (+)	NCBI

RefSeq Acc Id:

XM_040294688 ⟹ XP_040150622

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	158,413,166 - 158,453,829 (+)	NCBI

RefSeq Acc Id:

XM_040294690 ⟹ XP_040150624

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	158,412,010 - 158,453,829 (+)	NCBI

RefSeq Acc Id:

XM_040294691 ⟹ XP_040150625

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	158,411,636 - 158,453,829 (+)	NCBI

RefSeq Acc Id:

XM_040294692 ⟹ XP_040150626

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	158,411,835 - 158,453,829 (+)	NCBI

RefSeq Acc Id:

XM_040294693 ⟹ XP_040150627

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	158,413,166 - 158,453,829 (+)	NCBI

RefSeq Acc Id:

XM_040294694 ⟹ XP_040150628

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	158,413,166 - 158,453,829 (+)	NCBI

RefSeq Acc Id:

XM_040294695 ⟹ XP_040150629

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	158,430,292 - 158,453,829 (+)	NCBI

RefSeq Acc Id:

XM_040294696 ⟹ XP_040150630

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	158,411,865 - 158,453,829 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005338957	(Get FASTA)	NCBI Sequence Viewer
	XP_013220051	(Get FASTA)	NCBI Sequence Viewer
	XP_021591331	(Get FASTA)	NCBI Sequence Viewer
	XP_021591332	(Get FASTA)	NCBI Sequence Viewer
	XP_021591333	(Get FASTA)	NCBI Sequence Viewer
	XP_040150621	(Get FASTA)	NCBI Sequence Viewer
	XP_040150622	(Get FASTA)	NCBI Sequence Viewer
	XP_040150624	(Get FASTA)	NCBI Sequence Viewer
	XP_040150625	(Get FASTA)	NCBI Sequence Viewer
	XP_040150626	(Get FASTA)	NCBI Sequence Viewer
	XP_040150627	(Get FASTA)	NCBI Sequence Viewer
	XP_040150628	(Get FASTA)	NCBI Sequence Viewer
	XP_040150629	(Get FASTA)	NCBI Sequence Viewer
	XP_040150630	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000008652.2
	ENSSTOP00000025069.1

RefSeq Acc Id:	XP_005338957 ⟸ XM_005338900
- Peptide Label:	isoform X1
- UniProtKB:	I3MDY3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MALCQTSAEVILQVEEALDEEEKEMLLFLCLDITADVVPPTVRDLLDILCERGQLSVVQLAELL YRVRRFDLLKRILKMDRIAVEAHLRSHPHLVSDYRVLMVEIGENLDKKDVSALIFLMRDYTGRG KVSKDKSFLDLVVDLEKLNLIAPDQLDLLEECLKNIHRIDLKTKIQKYKQSAQGAMKGAGTSCV NSLHTSLPNLSLKDPSYSIRLQNGRSKGQRLWPLLQREPVKTSIQESGAFFLQHISEEIYKMQS KPLGICLIIDCIGNDTEVLRHTFTSLGYEVQNFLHLRVKDISHILHQVANLPRHRHHDSFVCVL VSRGGSQSVFGVDETHSGLSLHHIRRIFMGDKCPSLIGKPKLFFIQNYVVSEGQKEDSSLLEVD SPAVTNVESKEPKPGPSTVHREADFFWSLCTASVSLLEQASSSPSLYLQCLSQKLERERKRPLL DLHLDLNRKVYDWNSRVSAKEKYCLLLQHTLRKKLILSPT hide sequence

RefSeq Acc Id:	XP_013220051 ⟸ XM_013364597
- Peptide Label:	isoform X1
- UniProtKB:	I3MDY3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MALCQTSAEVILQVEEALDEEEKEMLLFLCLDITADVVPPTVRDLLDILCERGQLSVVQLAELL YRVRRFDLLKRILKMDRIAVEAHLRSHPHLVSDYRVLMVEIGENLDKKDVSALIFLMRDYTGRG KVSKDKSFLDLVVDLEKLNLIAPDQLDLLEECLKNIHRIDLKTKIQKYKQSAQGAMKGAGTSCV NSLHTSLPNLSLKDPSYSIRLQNGRSKGQRLWPLLQREPVKTSIQESGAFFLQHISEEIYKMQS KPLGICLIIDCIGNDTEVLRHTFTSLGYEVQNFLHLRVKDISHILHQVANLPRHRHHDSFVCVL VSRGGSQSVFGVDETHSGLSLHHIRRIFMGDKCPSLIGKPKLFFIQNYVVSEGQKEDSSLLEVD SPAVTNVESKEPKPGPSTVHREADFFWSLCTASVSLLEQASSSPSLYLQCLSQKLERERKRPLL DLHLDLNRKVYDWNSRVSAKEKYCLLLQHTLRKKLILSPT hide sequence

RefSeq Acc Id:	XP_021591331 ⟸ XM_021735656
- Peptide Label:	isoform X1
- UniProtKB:	I3MDY3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MALCQTSAEVILQVEEALDEEEKEMLLFLCLDITADVVPPTVRDLLDILCERGQLSVVQLAELL YRVRRFDLLKRILKMDRIAVEAHLRSHPHLVSDYRVLMVEIGENLDKKDVSALIFLMRDYTGRG KVSKDKSFLDLVVDLEKLNLIAPDQLDLLEECLKNIHRIDLKTKIQKYKQSAQGAMKGAGTSCV NSLHTSLPNLSLKDPSYSIRLQNGRSKGQRLWPLLQREPVKTSIQESGAFFLQHISEEIYKMQS KPLGICLIIDCIGNDTEVLRHTFTSLGYEVQNFLHLRVKDISHILHQVANLPRHRHHDSFVCVL VSRGGSQSVFGVDETHSGLSLHHIRRIFMGDKCPSLIGKPKLFFIQNYVVSEGQKEDSSLLEVD SPAVTNVESKEPKPGPSTVHREADFFWSLCTASVSLLEQASSSPSLYLQCLSQKLERERKRPLL DLHLDLNRKVYDWNSRVSAKEKYCLLLQHTLRKKLILSPT hide sequence

RefSeq Acc Id:	XP_021591332 ⟸ XM_021735657
- Peptide Label:	isoform X1
- UniProtKB:	I3MDY3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MALCQTSAEVILQVEEALDEEEKEMLLFLCLDITADVVPPTVRDLLDILCERGQLSVVQLAELL YRVRRFDLLKRILKMDRIAVEAHLRSHPHLVSDYRVLMVEIGENLDKKDVSALIFLMRDYTGRG KVSKDKSFLDLVVDLEKLNLIAPDQLDLLEECLKNIHRIDLKTKIQKYKQSAQGAMKGAGTSCV NSLHTSLPNLSLKDPSYSIRLQNGRSKGQRLWPLLQREPVKTSIQESGAFFLQHISEEIYKMQS KPLGICLIIDCIGNDTEVLRHTFTSLGYEVQNFLHLRVKDISHILHQVANLPRHRHHDSFVCVL VSRGGSQSVFGVDETHSGLSLHHIRRIFMGDKCPSLIGKPKLFFIQNYVVSEGQKEDSSLLEVD SPAVTNVESKEPKPGPSTVHREADFFWSLCTASVSLLEQASSSPSLYLQCLSQKLERERKRPLL DLHLDLNRKVYDWNSRVSAKEKYCLLLQHTLRKKLILSPT hide sequence

RefSeq Acc Id:

XP_021591333 ⟸ XM_021735658

- Peptide Label:

isoform X3

- Sequence:

show sequence

MVEIGENLDKKDVSALIFLMRDYTGRGKVSKDKSFLDLVVDLEKLNLIAPDQLDLLEECLKNIH
RIDLKTKIQKYKQSAQGAMKGAGTSCVNSLHTSLPNLSLKDPSYSIRLQNGRSKGQRLWPLLQR
EPVKTSIQESGAFFLQHISEEIYKMQSKPLGICLIIDCIGNDTEVLRHTFTSLGYEVQNFLHLR
VKDISHILHQVANLPRHRHHDSFVCVLVSRGGSQSVFGVDETHSGLSLHHIRRIFMGDKCPSLI
GKPKLFFIQNYVVSEGQKEDSSLLEVDSPAVTNVESKEPKPGPSTVHREADFFWSLCTASVSLL
EQASSSPSLYLQCLSQKLERERKRPLLDLHLDLNRKVYDWNSRVSAKEKYCLLLQHTLRKKLIL
SPT

hide sequence

RefSeq Acc Id:	XP_040150625 ⟸ XM_040294691
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_040150626 ⟸ XM_040294692
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_040150630 ⟸ XM_040294696
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_040150624 ⟸ XM_040294690
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_040150621 ⟸ XM_040294687
- Peptide Label:	isoform X1
- UniProtKB:	I3MDY3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040150627 ⟸ XM_040294693
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_040150622 ⟸ XM_040294688
- Peptide Label:	isoform X1
- UniProtKB:	I3MDY3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040150628 ⟸ XM_040294694
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_040150629 ⟸ XM_040294695
- Peptide Label:	isoform X3

RefSeq Acc Id:

ENSSTOP00000008652 ⟸ ENSSTOT00000009643

RefSeq Acc Id:

ENSSTOP00000025069 ⟸ ENSSTOT00000042246

Protein Domains

Caspase family p20 DED

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000009642	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000009643.3	UniProtKB/TrEMBL
	ENSSTOT00000042246.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.533.10	UniProtKB/TrEMBL
	3.40.50.1460	UniProtKB/TrEMBL
InterPro	Caspase-like_dom_sf	UniProtKB/TrEMBL
	DEATH-like_dom_sf	UniProtKB/TrEMBL
	DED_dom	UniProtKB/TrEMBL
	Pept_C14_caspase	UniProtKB/TrEMBL
	Pept_C14_p20	UniProtKB/TrEMBL
	Pept_C14A	UniProtKB/TrEMBL
NCBI Gene	Cflar	ENTREZGENE
PANTHER	CASP8 AND FADD LIKE APOPTOSIS REGULATOR	UniProtKB/TrEMBL
	DED DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
Pfam	DED	UniProtKB/TrEMBL
	Peptidase_C14	UniProtKB/TrEMBL
PRINTS	IL1BCENZYME	UniProtKB/TrEMBL
PROSITE	CASPASE_P20	UniProtKB/TrEMBL
	DED	UniProtKB/TrEMBL
SMART	CASc	UniProtKB/TrEMBL
	DED	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47986	UniProtKB/TrEMBL
	SSF52129	UniProtKB/TrEMBL
UniProt	I3MDY3	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

Imported Annotations - PID (archival)