Alcam (activated leukocyte cell adhesion molecule) - Rat Genome Database

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Gene: Alcam (activated leukocyte cell adhesion molecule) Ictidomys tridecemlineatus
Analyze
Symbol: Alcam
Name: activated leukocyte cell adhesion molecule
RGD ID: 12472911
Description: ENCODES a protein that exhibits identical protein binding (inferred); INVOLVED IN axon guidance (ortholog); motor neuron axon guidance (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); COVID-19 (ortholog); FOUND IN T cell receptor complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: activated leukocyte cell adhesion molecule, transcript variant X1; activated leukocyte cell adhesion molecule, transcript variant X2; CD166 antigen
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602145,582,988 - 145,771,697 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936701895,376 - 1,084,172 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936701895,414 - 1,084,155 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Alcam
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602145,582,988 - 145,771,697 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936701895,376 - 1,084,172 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936701895,414 - 1,084,155 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ALCAM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383105,366,909 - 105,576,900 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3105,366,909 - 105,576,900 (+)EnsemblGRCh38hg38GRCh38
GRCh373105,085,753 - 105,295,744 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363106,568,403 - 106,778,434 (+)NCBINCBI36Build 36hg18NCBI36
Build 343106,568,879 - 106,776,709NCBI
Celera3103,484,109 - 103,694,111 (+)NCBICelera
Cytogenetic Map3q13.11NCBI
HuRef3102,460,407 - 102,670,632 (+)NCBIHuRef
CHM1_13105,048,389 - 105,258,778 (+)NCBICHM1_1
T2T-CHM13v2.03108,084,937 - 108,294,916 (+)NCBIT2T-CHM13v2.0
Alcam
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391652,069,359 - 52,273,444 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1652,069,359 - 52,274,437 (-)EnsemblGRCm39 Ensembl
GRCm381652,248,996 - 52,453,081 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1652,248,996 - 52,454,074 (-)EnsemblGRCm38mm10GRCm38
MGSCv371652,249,109 - 52,453,110 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361652,170,261 - 52,373,422 (-)NCBIMGSCv36mm8
Celera1652,580,657 - 52,784,804 (-)NCBICelera
Cytogenetic Map16B5NCBI
cM Map1632.88NCBI
Alcam
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81161,804,932 - 62,005,250 (+)NCBIGRCr8
mRatBN7.21148,336,123 - 48,536,296 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1148,336,169 - 48,537,954 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1157,110,123 - 57,309,926 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01149,771,802 - 49,971,585 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01148,895,907 - 49,095,677 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01150,780,735 - 50,985,083 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1150,781,127 - 50,985,083 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01153,964,563 - 54,165,636 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41149,424,243 - 49,630,071 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11149,481,831 - 49,687,660 (+)NCBI
Celera1148,024,575 - 48,218,199 (+)NCBICelera
Cytogenetic Map11q21NCBI
Alcam
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554276,494,124 - 6,545,963 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554276,494,657 - 6,544,668 (+)NCBIChiLan1.0ChiLan1.0
ALCAM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22103,319,297 - 103,529,920 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13103,325,067 - 103,534,696 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03102,468,354 - 102,677,932 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13109,407,296 - 109,616,518 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3109,407,992 - 109,616,518 (+)Ensemblpanpan1.1panPan2
ALCAM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13310,983,363 - 11,195,170 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3310,983,363 - 11,370,085 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3311,088,414 - 11,300,048 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03311,141,772 - 11,353,405 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3311,141,772 - 11,353,405 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13311,011,197 - 11,222,028 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03311,078,031 - 11,289,490 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03311,486,320 - 11,697,980 (+)NCBIUU_Cfam_GSD_1.0
ALCAM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13153,794,993 - 153,998,208 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113153,794,991 - 153,998,241 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213162,988,454 - 163,045,771 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ALCAM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12275,261,104 - 75,475,201 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2275,260,970 - 75,321,082 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604191,034,797 - 91,244,770 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Alcam
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473144,091,769 - 44,280,621 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473144,092,505 - 44,280,022 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000000863   ⟹   ENSSTOP00000000774
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936701895,376 - 1,084,172 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000043254   ⟹   ENSSTOP00000026573
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936701895,376 - 1,084,172 (+)Ensembl
RefSeq Acc Id: XM_005338034   ⟹   XP_005338091
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602145,582,988 - 145,771,697 (-)NCBI
SpeTri2.0NW_004936701895,414 - 1,084,155 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005338035   ⟹   XP_005338092
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602145,582,988 - 145,771,609 (-)NCBI
SpeTri2.0NW_004936701895,414 - 1,084,155 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005338091 (Get FASTA)   NCBI Sequence Viewer  
  XP_005338092 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000000774.3
  ENSSTOP00000026573.1
GenBank Protein KAG3271578 (Get FASTA)   NCBI Sequence Viewer  
  KAG3271579 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005338091   ⟸   XM_005338034
- Peptide Label: isoform X1
- UniProtKB: A0A287CZ69 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005338092   ⟸   XM_005338035
- Peptide Label: isoform X2
- UniProtKB: I3LXH3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000000774   ⟸   ENSSTOT00000000863
RefSeq Acc Id: ENSSTOP00000026573   ⟸   ENSSTOT00000043254
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000000863 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000000863.3 UniProtKB/TrEMBL
  ENSSTOT00000043254.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro CD80_C2-set UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
NCBI Gene Alcam ENTREZGENE
PANTHER CELL SURFACE GLYCOPROTEIN MUC18-RELATED UniProtKB/TrEMBL
  PTHR11973:SF2 UniProtKB/TrEMBL
Pfam C2-set_2 UniProtKB/TrEMBL
  Ig_3 UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A287CZ69 ENTREZGENE, UniProtKB/TrEMBL
  I3LXH3 ENTREZGENE, UniProtKB/TrEMBL