PDE6H (phosphodiesterase 6H) - Rat Genome Database

Name: PDE6H
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: PDE6H (phosphodiesterase 6H) Canis lupus familiaris

Analyze

Symbol:

PDE6H

Name:

phosphodiesterase 6H

RGD ID:

12151468

Description:

ENCODES a protein that exhibits 3',5'-cyclic-nucleotide phosphodiesterase activity (inferred); cGMP binding (inferred); hydrolase activity (inferred); INVOLVED IN positive regulation of epidermal growth factor receptor signaling pathway (ortholog); positive regulation of G protein-coupled receptor signaling pathway (ortholog); positive regulation of MAPK cascade (ortholog); PARTICIPATES IN visual phototransduction pathway; ASSOCIATED WITH autosomal dominant intellectual developmental disorder 6 (ortholog); color blindness (ortholog); cone-rod dystrophy 14 (ortholog); FOUND IN photoreceptor outer segment membrane (inferred); INTERACTS WITH masitinib

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

retinal cone rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PDE6H (phosphodiesterase 6H)	HGNC	EggNOG, Ensembl, HomoloGene, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Pde6h (phosphodiesterase 6H, cGMP-specific, cone, gamma)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Pde6h (phosphodiesterase 6H)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pde6h (phosphodiesterase 6H)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PDE6H (phosphodiesterase 6H)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pde6h (phosphodiesterase 6H)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PDE6H (phosphodiesterase 6H)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PDE6H (phosphodiesterase 6H)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pde6h (phosphodiesterase 6H)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PDE6G (phosphodiesterase 6G)	HGNC	OrthoDB

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	31,640,731 - 31,664,494 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	31,640,737 - 31,664,401 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	14,784,654 - 14,808,356 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	31,947,405 - 31,970,923 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	31,947,411 - 31,970,880 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	31,836,788 - 31,860,326 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	31,795,045 - 31,818,763 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	14,516,903 - 14,540,640 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant intellectual developmental disorder 6 (ISO)

color blindness (ISO)

cone-rod dystrophy 14 (ISO)

retinal cone dystrophy 3A (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

masitinib (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of epidermal growth factor receptor signaling pathway (IEA,ISO)

positive regulation of G protein-coupled receptor signaling pathway (IEA,ISO)

positive regulation of MAPK cascade (ISO)

visual perception (IEA)

Cellular Component

photoreceptor outer segment membrane (IEA)

Molecular Function

3',5'-cyclic-nucleotide phosphodiesterase activity (IEA)

cGMP binding (IEA)

hydrolase activity (IEA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

visual phototransduction pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

PDE6H
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	31,640,731 - 31,664,494 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	31,640,737 - 31,664,401 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	14,784,654 - 14,808,356 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	31,947,405 - 31,970,923 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	31,947,411 - 31,970,880 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	31,836,788 - 31,860,326 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	31,795,045 - 31,818,763 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	14,516,903 - 14,540,640 (+)	NCBI		UU_Cfam_GSD_1.0

PDE6H
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	14,973,042 - 14,981,865 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	14,973,042 - 14,981,865 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	15,125,976 - 15,134,799 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	15,017,245 - 15,026,066 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	15,017,244 - 15,026,066	NCBI
Celera	12	20,270,954 - 20,279,795 (+)	NCBI		Celera
Cytogenetic Map	12	p12.3	NCBI
HuRef	12	14,895,337 - 14,904,178 (+)	NCBI		HuRef
CHM1_1	12	15,092,057 - 15,100,898 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	14,850,375 - 14,859,197 (+)	NCBI		T2T-CHM13v2.0

Pde6h
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	136,929,216 - 136,940,483 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	136,900,830 - 136,945,863 (+)	Ensembl		GRCm39 Ensembl
GRCm38	6	136,952,218 - 136,963,485 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	136,923,832 - 136,968,865 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	136,903,044 - 136,912,004 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	136,918,719 - 136,927,678 (+)	NCBI		MGSCv36	mm8
Celera	6	139,997,648 - 140,006,582 (+)	NCBI		Celera
Cytogenetic Map	6	G1	NCBI
cM Map	6	66.72	NCBI

Pde6h
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	171,588,896 - 171,604,142 (+)	NCBI		GRCr8
mRatBN7.2	4	169,857,793 - 169,872,969 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	169,857,812 - 169,872,969 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	176,164,525 - 176,169,238 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	171,944,657 - 171,949,411 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	170,570,202 - 170,574,915 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	170,947,723 - 170,963,046 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	170,958,196 - 170,963,046 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	235,204,371 - 235,219,664 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	174,009,860 - 174,014,405 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	174,254,983 - 174,259,529 (+)	NCBI
Celera	4	158,449,142 - 158,453,876 (+)	NCBI		Celera
Cytogenetic Map	4	q43	NCBI

Pde6h
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	11,703,378 - 11,712,075 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955413	11,654,252 - 11,711,799 (+)	NCBI	ChiLan1.0	ChiLan1.0

PDE6H
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	20,254,398 - 20,430,243 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	20,285,815 - 20,427,004 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	14,890,192 - 14,984,542 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	15,372,413 - 15,381,249 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	15,372,413 - 15,381,249 (+)	Ensembl	panpan1.1		panPan2

Pde6h
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	92,778,204 - 92,786,504 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936587	2,506,585 - 2,514,157 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936587	2,505,755 - 2,514,103 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PDE6H
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	57,556,149 - 57,594,423 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	57,555,448 - 57,582,324 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	60,944,506 - 60,978,007 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PDE6H
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	14,869,864 - 14,880,307 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	14,870,498 - 14,880,324 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666069	20,430,389 - 20,439,864 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pde6h
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624752	23,051,752 - 23,055,103 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624752	23,051,486 - 23,055,128 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in PDE6H
249 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium	4						1
Low	1	5	5		6		5		2		10	6
Below cutoff			17	6		6		6	10	8

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005637111	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022411256	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038438921	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038438923	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038438924	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038513577	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038513578	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038513579	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038576893	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038576894	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038576895	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038641398	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038641399	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038641400	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_848650	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000020427 ⟹ ENSCAFP00000018954

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	27	31,640,738 - 31,664,401 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000081111 ⟹ ENSCAFP00000057342

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	27	31,640,737 - 31,664,401 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845036905 ⟹ ENSCAFP00845028895

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	27	31,947,411 - 31,970,880 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845036934 ⟹ ENSCAFP00845028917

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	27	31,947,411 - 31,953,610 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845036982 ⟹ ENSCAFP00845028958

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	27	31,947,412 - 31,970,880 (-)	Ensembl

RefSeq Acc Id:

XM_005637111 ⟹ XP_005637168

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	27	31,640,731 - 31,646,882 (-)	NCBI
Dog10K_Boxer_Tasha	27	14,802,216 - 14,808,356 (+)	NCBI

Sequence:

show sequence

TCAGTAAACAGATGAACTGGCAGCCCATTTCTGAAAACCACTGAGAGGTTTGTGAGGAGAAGAC
CAATTGTTGCCTTCTTTATGGTTTAGTGGAGAATTCACAGGGTCAGAATCTCATGACCCAGTGT
TCAAGATATTAGTTCAACTTCTCCATTTATTTATTCACCCATTGGATAAATATATATGGCACCC
CTGCTATGTGCCAGGCCTTTTTCTAGGTTTTGAGGTCGCAGAAATGAACAAAAATGGAAAAAGC
AGCCTTATGGAGCACATTCCAGTGGGGAATTAAGATAAGATCCATGGCATGAACAAATGATCCA
GAGCCCTGGCCAGATTGACCATCCTTGATACCTGCTCACAGGAACCTGAAAGAGAACCATCAGA
CACCCAGGGACATCAGGATGAGTGACAACACTACTTTGGCTCCTCCAGCTTCAAACCAGGGTCC
CACCACCCCCCGCAAGGGGCCCCCCAAGTTCAAGCAGAGACAGACACGCCAATTCAAGAGCAAA
CCTCCTAAGAAAGGTGTGAAAGGGTTTGGAGATGACATTCCAGGCATGGAGGGGCTAGGAACAG
ACATCACGGTGATTTGTCCCTGGGAAGCGTTTAGCCACCTGGAGTTGCATGAGCTTGCTCAGTT
TGGGATCATCTGATGCACCACAGGTTCTGTCGCTCTCAACAGCATCGGCTGTAATTTTGATTAC
TTTTGCCCTATTGATCTGCCGGAGTCTTGAAATTCAGCTGTTCGGAAGTGGTTTCTTCAGCTTA
CACAGTCATTTCCCCTCCATTGCTATGAAGAGTTCTCATAGTGTCAGATCCTCTCTTGCCATAC
AGTTCAGCTCAGAATAGTGGATGCAAATTGTCTTTTATTAGGGCATTTCAAACTTTACCATCTT
CCCCCATCAGCTGGTTGGAAATCATTGATAGTTTTCTAGATTTTGTTTATTTGTTAAATCTTTC
AAATCTATTTGGACTAGGCAATCCCAATAATTGGTAGTAGCTTTTAAGAGAACATTTATGTCAT
TCCCTTCCTCTTCTCATTTAATAAAGAAGATATTTACCTTCAATCTAA

hide sequence

RefSeq Acc Id:

XM_022411256 ⟹ XP_022266964

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	27	31,640,731 - 31,646,522 (-)	NCBI
Dog10K_Boxer_Tasha	27	14,802,210 - 14,808,356 (+)	NCBI

Sequence:

show sequence

GGTTAGTCAATGTATTTCTGTTGAAGAAGTTGAGAACTAGAAGGAGAAAATTAAAATAGTAATT
GGGGAAAAGAAGGAACCTGAAAGAGAACCATCAGACACCCAGGGACATCAGGATGAGTGACAAC
ACTACTTTGGCTCCTCCAGCTTCAAACCAGGGTCCCACCACCCCCCGCAAGGGGCCCCCCAAGT
TCAAGCAGAGACAGACACGCCAATTCAAGAGCAAACCTCCTAAGAAAGGTGTGAAAGGGTTTGG
AGATGACATTCCAGGCATGGAGGGGCTAGGAACAGACATCACGGTGATTTGTCCCTGGGAAGCG
TTTAGCCACCTGGAGTTGCATGAGCTTGCTCAGTTTGGGATCATCTGATGCACCACAGGTTCTG
TCGCTCTCAACAGCATCGGCTGTAATTTTGATTACTTTTGCCCTATTGATCTGCCGGAGTCTTG
AAATTCAGCTGTTCGGAAGTGGTTTCTTCAGCTTACACAGTCATTTCCCCTCCATTGCTATGAA
GAGTTCTCATAGTGTCAGATCCTCTCTTGCCATACAGTTCAGCTCAGAATAGTGGATGCAAATT
GTCTTTTATTAGGGCATTTCAAACTTTACCATCTTCCCCCATCAGCTGGTTGGAAATCATTGAT
AGTTTTCTAGATTTTGTTTATTTGTTAAATCTTTCAAATCTATTTGGACTAGGCAATCCCAATA
ATTGGTAGTAGCTTTTAAGAGAACATTTATGTCATTCCCTTCCTCTTCTCATTTAATAAAGAAG
ATATTTACCTTCAATCTAA

hide sequence

RefSeq Acc Id:

XM_038438921 ⟹ XP_038294849

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	27	31,947,405 - 31,970,923 (-)	NCBI

RefSeq Acc Id:

XM_038438923 ⟹ XP_038294851

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	27	31,947,405 - 31,953,561 (-)	NCBI

RefSeq Acc Id:

XM_038438924 ⟹ XP_038294852

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	27	31,947,405 - 31,953,566 (-)	NCBI

RefSeq Acc Id:

XM_038513577 ⟹ XP_038369505

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	27	31,836,788 - 31,860,326 (-)	NCBI

RefSeq Acc Id:

XM_038513578 ⟹ XP_038369506

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	27	31,836,788 - 31,842,928 (-)	NCBI

RefSeq Acc Id:

XM_038513579 ⟹ XP_038369507

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	27	31,836,788 - 31,842,933 (-)	NCBI

RefSeq Acc Id:

XM_038576893 ⟹ XP_038432821

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	27	14,516,903 - 14,540,640 (+)	NCBI

RefSeq Acc Id:

XM_038576894 ⟹ XP_038432822

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	27	14,534,501 - 14,540,640 (+)	NCBI

RefSeq Acc Id:

XM_038576895 ⟹ XP_038432823

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	27	14,534,495 - 14,540,640 (+)	NCBI

RefSeq Acc Id:

XM_038641398 ⟹ XP_038497326

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	27	31,795,045 - 31,818,763 (-)	NCBI

RefSeq Acc Id:

XM_038641399 ⟹ XP_038497327

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	27	31,795,045 - 31,801,190 (-)	NCBI

RefSeq Acc Id:

XM_038641400 ⟹ XP_038497328

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	27	31,795,045 - 31,801,195 (-)	NCBI

RefSeq Acc Id:

XM_848650 ⟹ XP_853743

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	27	31,640,731 - 31,664,494 (-)	NCBI
Dog10K_Boxer_Tasha	27	14,784,654 - 14,808,356 (+)	NCBI

Sequence:

show sequence

AAACCAAACCTCAATGTTGCTCCCAGCATACTTCCCTGGGGACAAATTCATGCTCTCCCAAACA
AGGAAGAACTAAATCCCAGTTTCTGGAACATGCCAGTCAGTTTTTGCTCATCTGTAACATGGTT
ATTTCACGTGTGCTGGGTCTGGGCGGCACGAATGGAGAATGAACCCTTCTCTCAGACCTCTACA
CCTCTCACGAAAGAGAACCTGAAAGAGAACCATCAGACACCCAGGGACATCAGGATGAGTGACA
ACACTACTTTGGCTCCTCCAGCTTCAAACCAGGGTCCCACCACCCCCCGCAAGGGGCCCCCCAA
GTTCAAGCAGAGACAGACACGCCAATTCAAGAGCAAACCTCCTAAGAAAGGTGTGAAAGGGTTT
GGAGATGACATTCCAGGCATGGAGGGGCTAGGAACAGACATCACGGTGATTTGTCCCTGGGAAG
CGTTTAGCCACCTGGAGTTGCATGAGCTTGCTCAGTTTGGGATCATCTGATGCACCACAGGTTC
TGTCGCTCTCAACAGCATCGGCTGTAATTTTGATTACTTTTGCCCTATTGATCTGCCGGAGTCT
TGAAATTCAGCTGTTCGGAAGTGGTTTCTTCAGCTTACACAGTCATTTCCCCTCCATTGCTATG
AAGAGTTCTCATAGTGTCAGATCCTCTCTTGCCATACAGTTCAGCTCAGAATAGTGGATGCAAA
TTGTCTTTTATTAGGGCATTTCAAACTTTACCATCTTCCCCCATCAGCTGGTTGGAAATCATTG
ATAGTTTTCTAGATTTTGTTTATTTGTTAAATCTTTCAAATCTATTTGGACTAGGCAATCCCAA
TAATTGGTAGTAGCTTTTAAGAGAACATTTATGTCATTCCCTTCCTCTTCTCATTTAATAAAGA
AGATATTTACCTTCAATCTAA

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Protein Sequences


Protein RefSeqs	XP_005637168	(Get FASTA)	NCBI Sequence Viewer
	XP_022266964	(Get FASTA)	NCBI Sequence Viewer
	XP_038294849	(Get FASTA)	NCBI Sequence Viewer
	XP_038294851	(Get FASTA)	NCBI Sequence Viewer
	XP_038294852	(Get FASTA)	NCBI Sequence Viewer
	XP_038369505	(Get FASTA)	NCBI Sequence Viewer
	XP_038369506	(Get FASTA)	NCBI Sequence Viewer
	XP_038369507	(Get FASTA)	NCBI Sequence Viewer
	XP_038432821	(Get FASTA)	NCBI Sequence Viewer
	XP_038432822	(Get FASTA)	NCBI Sequence Viewer
	XP_038432823	(Get FASTA)	NCBI Sequence Viewer
	XP_038497326	(Get FASTA)	NCBI Sequence Viewer
	XP_038497327	(Get FASTA)	NCBI Sequence Viewer
	XP_038497328	(Get FASTA)	NCBI Sequence Viewer
	XP_853743	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000018954.3
	ENSCAFP00000057342.1
	ENSCAFP00000070347.1
	ENSCAFP00030041561.1
	ENSCAFP00030041565.1
	ENSCAFP00040036874.1
	ENSCAFP00845028895.1
	ENSCAFP00845028917.1
	ENSCAFP00845028958
	ENSCAFP00845028958.1

RefSeq Acc Id:	XP_853743 ⟸ XM_848650
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0JZS3 (UniProtKB/TrEMBL), A0A8C0PN66 (UniProtKB/TrEMBL), A0A8I3PDZ9 (UniProtKB/TrEMBL), A0A8C0RTV6 (UniProtKB/TrEMBL), A0A8I3P668 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPVSFCSSVTWLFHVCWVWAARMENEPFSQTSTPLTKENLKENHQTPRDIRMSDNTTLAPPASN QGPTTPRKGPPKFKQRQTRQFKSKPPKKGVKGFGDDIPGMEGLGTDITVICPWEAFSHLELHEL AQFGII hide sequence

RefSeq Acc Id:	XP_005637168 ⟸ XM_005637111
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0QWU0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSDNTTLAPPASNQGPTTPRKGPPKFKQRQTRQFKSKPPKKGVKGFGDDIPGMEGLGTDITVIC PWEAFSHLELHELAQFGII hide sequence

RefSeq Acc Id:	XP_022266964 ⟸ XM_022411256
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0QWU0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSDNTTLAPPASNQGPTTPRKGPPKFKQRQTRQFKSKPPKKGVKGFGDDIPGMEGLGTDITVIC PWEAFSHLELHELAQFGII hide sequence

RefSeq Acc Id:

ENSCAFP00000018954 ⟸ ENSCAFT00000020427

RefSeq Acc Id:

ENSCAFP00000057342 ⟸ ENSCAFT00000081111

RefSeq Acc Id:	XP_038369505 ⟸ XM_038513577
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038369507 ⟸ XM_038513579
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038369506 ⟸ XM_038513578
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038497326 ⟸ XM_038641398
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038497328 ⟸ XM_038641400
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038497327 ⟸ XM_038641399
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038294849 ⟸ XM_038438921
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0JZS3 (UniProtKB/TrEMBL), A0A8C0PN66 (UniProtKB/TrEMBL), A0A8I3PDZ9 (UniProtKB/TrEMBL), A0A8C0RTV6 (UniProtKB/TrEMBL), A0A8I3P668 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038294852 ⟸ XM_038438924
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0QWU0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038294851 ⟸ XM_038438923
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0QWU0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038432821 ⟸ XM_038576893
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0JZS3 (UniProtKB/TrEMBL), A0A8C0PN66 (UniProtKB/TrEMBL), A0A8C0RTV6 (UniProtKB/TrEMBL), A0A8I3P668 (UniProtKB/TrEMBL), A0A8I3PDZ9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038432823 ⟸ XM_038576895
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0QWU0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038432822 ⟸ XM_038576894
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0QWU0 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845028917 ⟸ ENSCAFT00845036934

RefSeq Acc Id:

ENSCAFP00845028958 ⟸ ENSCAFT00845036982

RefSeq Acc Id:

ENSCAFP00845028895 ⟸ ENSCAFT00845036905

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000012874	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030025744	UniProtKB/TrEMBL
	ENSCAFG00040022752	UniProtKB/TrEMBL
	ENSCAFG00845020918	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000020427.5	UniProtKB/TrEMBL
	ENSCAFT00000081111.2	UniProtKB/TrEMBL
	ENSCAFT00000097922.1	UniProtKB/TrEMBL
	ENSCAFT00030047532.1	UniProtKB/TrEMBL
	ENSCAFT00030047538.1	UniProtKB/TrEMBL
	ENSCAFT00040042274.1	UniProtKB/TrEMBL
	ENSCAFT00845036905.1	UniProtKB/TrEMBL
	ENSCAFT00845036934.1	UniProtKB/TrEMBL
	ENSCAFT00845036982	ENTREZGENE
	ENSCAFT00845036982.1	UniProtKB/TrEMBL
Gene3D-CATH	4.10.1120.10	UniProtKB/TrEMBL
InterPro	PDE6_gamma	UniProtKB/TrEMBL
	PDE6_gamma_sf	UniProtKB/TrEMBL
NCBI Gene	PDE6H	ENTREZGENE
PANTHER	PTHR12122	UniProtKB/TrEMBL
	RETINAL CONE RHODOPSIN-SENSITIVE CGMP 3',5'-CYCLIC PHOSPHODIESTERASE SUBUNIT GAMMA	UniProtKB/TrEMBL
Pfam	PDE6_gamma	UniProtKB/TrEMBL
UniProt	A0A8C0JZS3	ENTREZGENE
	A0A8C0PN66	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0QWU0	ENTREZGENE
	A0A8C0RTV6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0TK30_CANLF	UniProtKB/TrEMBL
	A0A8I3P668	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3P9J0_CANLF	UniProtKB/TrEMBL
	A0A8I3PDZ9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0TMZ7_CANLF	UniProtKB/TrEMBL
VGNC ID	VGNC:44362	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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