S100A4 (S100 calcium binding protein A4) - Rat Genome Database

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Gene: S100A4 (S100 calcium binding protein A4) Pan paniscus
Analyze
Symbol: S100A4
Name: S100 calcium binding protein A4
RGD ID: 11886538
Description: ENCODES a protein that exhibits actin binding (ortholog); calcium ion binding (ortholog); calcium-dependent protein binding (ortholog); INVOLVED IN positive chemotaxis (inferred); positive regulation of canonical NF-kappaB signal transduction (inferred); PARTICIPATES IN calcium/calcium-mediated signaling pathway; ASSOCIATED WITH adult respiratory distress syndrome (ortholog); Colonic Neoplasms (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2196,288,008 - 96,290,345 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1196,023,251 - 96,025,528 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01128,898,765 - 128,901,042 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11132,527,846 - 132,530,125 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,527,846 - 132,530,122 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
S100A4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2196,288,008 - 96,290,345 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1196,023,251 - 96,025,528 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01128,898,765 - 128,901,042 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11132,527,846 - 132,530,125 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,527,846 - 132,530,122 (-)Ensemblpanpan1.1panPan2
S100A4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381153,543,621 - 153,545,806 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1153,543,613 - 153,550,136 (-)EnsemblGRCh38hg38GRCh38
GRCh371153,516,097 - 153,518,282 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361151,782,719 - 151,784,906 (-)NCBINCBI36Build 36hg18NCBI36
Build 341150,329,170 - 150,331,355NCBI
Celera1126,587,355 - 126,589,542 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1124,879,355 - 124,881,542 (-)NCBIHuRef
CHM1_11154,912,044 - 154,914,231 (-)NCBICHM1_1
T2T-CHM13v2.01152,680,877 - 152,683,062 (-)NCBIT2T-CHM13v2.0
S100a4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39390,511,077 - 90,513,349 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl390,511,078 - 90,513,352 (+)EnsemblGRCm39 Ensembl
GRCm38390,603,770 - 90,606,045 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl390,603,771 - 90,606,045 (+)EnsemblGRCm38mm10GRCm38
MGSCv37390,407,692 - 90,409,967 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36390,689,697 - 90,691,968 (+)NCBIMGSCv36mm8
Celera390,645,174 - 90,647,449 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.27NCBI
S100a4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82178,388,529 - 178,390,838 (+)NCBIGRCr8
mRatBN7.22176,090,951 - 176,093,258 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2176,091,804 - 176,093,254 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2183,231,137 - 183,233,459 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02181,253,405 - 181,255,727 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02175,853,265 - 175,855,593 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02189,997,278 - 189,999,587 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2189,997,129 - 189,999,604 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02209,431,373 - 209,433,680 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42182,885,070 - 182,887,380 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12182,835,175 - 182,837,486 (+)NCBI
Celera2170,025,678 - 170,027,982 (+)NCBICelera
RH 3.4 Map21164.6RGD
Cytogenetic Map2q34NCBI
S100a4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955545192,116 - 195,394 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955545192,236 - 194,468 (-)NCBIChiLan1.0ChiLan1.0
S100A4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1743,494,007 - 43,496,021 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,986,972 - 42,988,993 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0743,443,738 - 43,445,759 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl743,440,733 - 43,445,796 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1743,146,014 - 43,148,039 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0743,199,907 - 43,201,928 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0743,483,524 - 43,485,545 (+)NCBIUU_Cfam_GSD_1.0
S100a4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505824,325,369 - 24,327,658 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365803,355,699 - 3,358,242 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365803,355,751 - 3,358,030 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
S100A4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl496,088,201 - 96,091,156 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1496,088,102 - 96,091,160 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24104,908,141 - 104,911,151 (-)NCBISscrofa10.2Sscrofa10.2susScr3
S100A4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12010,258,142 - 10,260,390 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2010,258,070 - 10,260,871 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660389,649,628 - 9,651,911 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
S100a4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248853,586,909 - 3,592,914 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248853,589,323 - 3,591,463 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000015349   ⟹   ENSPPAP00000003338
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1132,527,846 - 132,530,122 (-)Ensembl
RefSeq Acc Id: XM_003817166   ⟹   XP_003817214
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2196,288,008 - 96,290,345 (+)NCBI
NHGRI_mPanPan1196,023,251 - 96,025,528 (+)NCBI
Mhudiblu_PPA_v01128,898,765 - 128,901,042 (-)NCBI
PanPan1.11132,527,846 - 132,530,125 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063599109   ⟹   XP_063455179
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2196,288,897 - 96,290,345 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003817214 (Get FASTA)   NCBI Sequence Viewer  
  XP_063455179 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000003338.1
Reference Protein Sequences
RefSeq Acc Id: XP_003817214   ⟸   XM_003817166
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSPPAP00000003338   ⟸   ENSPPAT00000015349
RefSeq Acc Id: XP_063455179   ⟸   XM_063599109
- Peptide Label: isoform X2
- UniProtKB: A0A2R8ZE71 (UniProtKB/TrEMBL)
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000014009 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000015349.1 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  S-100_dom UniProtKB/TrEMBL
  S100/CaBP-9k_CS UniProtKB/TrEMBL
  S100_Ca-bd_sub UniProtKB/TrEMBL
KEGG Report pps:100989703 UniProtKB/TrEMBL
NCBI Gene S100A4 ENTREZGENE
PANTHER PTHR11639:SF51 UniProtKB/TrEMBL
  S100 CALCIUM-BINDING PROTEIN UniProtKB/TrEMBL
Pfam S_100 UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
  S100_CABP UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
  S_100 UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A2R8ZE71 ENTREZGENE, UniProtKB/TrEMBL